CcUC01G008310 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G008310
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic
Location	CicolChr01: 8827550 .. 8830424 (-)
RNA-Seq Expression	CcUC01G008310
Synteny	CcUC01G008310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAGCAATGCTTTTATCCTTTTCCTCTTTCTTGTGGCTGTGGCTCTCTTCTTCTTCTTCTTCCTCAAAATCTCTCATTCCTTTCTCTGGTCGACATTAATGGCGGCCAAGCTTCTACCATCATCCAATCTCTATCCTCCCCCTTCCAACTCCTTCTCCGCCGTAGACCTAACTCCGCGCCCATGCTTCGGCCGACCTCGCACTCATTTCAACCAGCACAGATCGGTAACCGTCAGAGTCAATGCGGAACCGCTCGTCGTTCTCCAAGACCACCACAACTCCGCCGTCCTCCTGGCTGAGACAGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCCTATGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTATTTTATAAATTCACCTCCGATGCAATTCGAATTACATCGCTCTCATATTCTTCTCTGTTTCTGTTGTGTGTAATCCGTTGAAAATCGCATGGATTAGGTTGTGAAGAAGACGTTCGTTAGCGATGGAGAATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGTAATAATTTCCAAGTCACAGACAGAGGTGAAACCATAACGTAAGGCGAATTTGCTCTTGGAATTGGAACAATTTTGTGATTCTTTGTTTAGTTGAATTGCTTGGAATTAACTTCTGGAGGTTCTATTGATGCTTGATTGTGAAGGTTTGAAGGAACAATGGTGCCGAGTCGAGGGCAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCTAGCGTGGGTCTTGTTCTGACCATAACGTTTCCAGATTTTGGCAACAATTGGTTTTGGATTAGCAGCTTGAGTCCCTTAGCGTAAGTCCCACTCTACTTCTCTTCTTTTTTGCTTGTTCCAGTTCCACCATTAATGCATATTTTGATGCACTAAGCTCATAGGATAAGTTGATTTTTACCCAATCCAAACTCAAGATTTCAAAATTATTAAAATACTTATATAATGAATAAATACCTTATATAAAATTACCGTCTAGTTTGGTAATTCTTCGTTTTTTACCACTATTCCTATAAGTAAGTTTATTTATTTGGTTATTCACTTTCCACTAATGTTTTAGAAAATCAAGCCAAAATTTTAAAAACTAGAACAACAATTTTCAAAAAATTTGACTGAAAATTATAGTGCTAAAAGTGAAAACTTTAGGAGAAAAAAAGCATGAATTTGAAAAATTAGAAAACTAAAGACAAATGAGCTTCAGCTTACATTTCATGGTGGAGGAAAAAATTCTATTGAAGTTTGGATAAGATTTTAGTTTACATTTTTAGTTTCATTTAGTCTTCAACCTTTAGAAAGTGAGAAATGATTGCCGAAGGAGTTGGAAAGTCGAAGTTGAGAAGGACTTGGTGAGTCCCACTACTAAAAATATATGAATTTTATATCTTATCAACTCCTTATACTCTTGGCCCCAAAAATTCACAACTCCCTAAATTTCATAACTCCTGCTACAAACTAAACTCATGACGTAATAATTGATTTTGTTTTTCACTTGCTACCACTCCATTCAAATATCTAAAATTATGCTATTTTTTATAAGGCCAAATTATTGTTTTAAGAAAACCTTAAAAAAAAAAAAATGTAAGCTGTCATTTATTCCAAAAATGTCCACTTAATTTTCTTTTTCAAAAGATGTAATACTATCCTTAATATTTTTTAAGTTTTCAAAACTAACCCTCCAAAGAAAATTATGAAAAATGTTGAACAAAATTTGTGCAGTAACTTCAAAACAAAATTTGAGATTAATCCCATTATTTTAGGTCATTTGAAGTCCCAACTGATTCTACGTCAAGAGTAATTTTGAAAAATTTATTAAAAGGTCAAAATATAATATTACAACCTTTAGGCAATTGAAGATAATTTTTAAATAAAGGGTAGAAATGAAAAGTATTTTGTTATTTAATTAATTAGAAAATAACACTAGATTCAGTTCTTCCTTAAGATTGCAAAGGTTTCTAACAAATTAGAAGAAATTAACGTGACTTTTTATAACAACGCCCTAATAATATCATAAACAGTACTTCAAATTCTATCTTCAATTTTAAAATTCAAAAAGGATTCCAAAAGGAATAAAGCAAAAAAAAAAAAACAGTAAAGAGATGACATGAATAAATAAACTTCAAGCTTGTTTTTGAATTGACTAGAGAAAAAGATGTTCTTCACAAAAGTCATTTTTTATTTAAACTCTTTTGATAAAAACTGTTTAAAATGTTTCAAAAATTATTTTCAATTTTTTTACAAAATGACTTATTTTCAAAATTAAACACTTGAAAAGTTAAACTAAATAATATTCAACTGGGGATGAAAAGTAGCAACTGTTAAAAGAAATGAAATCATATACTAATAGTTTCCAAATTCAAAATAAGATTGAGATTACATGACAATACCTTAGAAGCTGCAAACTGCAGTGGAGCATACTACTGGGTGAAAGCATCAAGAAAGGAAGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGGCTTGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTTGAACAAATGAGAAAGGAGCTTCAGTTGAGTGAAAAAGGCATGGTTTATGTCAAAGGTATTTTTGAGCAATGATTATTACTTCTCTTTTCTTTTTCCCTTTTTTTCCTCTTTAGCATAGTTGAAGGAATCTTCATGAGTTACAATTCTAGTTCCCAAATGCTAAATCTTCAATAACTCAATCAATCAGTCCAGATTCTGGAAAAGATTCAAACTTGTACAACAATTTTCAACACATGAATCATACAAATACATCAAAATTTGAATATGCCCT

mRNA sequence

GCAAAGCAATGCTTTTATCCTTTTCCTCTTTCTTGTGGCTGTGGCTCTCTTCTTCTTCTTCTTCCTCAAAATCTCTCATTCCTTTCTCTGGTCGACATTAATGGCGGCCAAGCTTCTACCATCATCCAATCTCTATCCTCCCCCTTCCAACTCCTTCTCCGCCGTAGACCTAACTCCGCGCCCATGCTTCGGCCGACCTCGCACTCATTTCAACCAGCACAGATCGGTAACCGTCAGAGTCAATGCGGAACCGCTCGTCGTTCTCCAAGACCACCACAACTCCGCCGTCCTCCTGGCTGAGACAGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCCTATGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACGTTCGTTAGCGATGGAGAATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGTAATAATTTCCAAGTCACAGACAGAGGTGAAACCATAACGTTTGAAGGAACAATGGTGCCGAGTCGAGGGCAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCTAGCGTGGGTCTTGTTCTGACCATAACGTTTCCAGATTTTGGCAACAATTGGTTTTGGATTAGCAGCTTGAGTCCCTTAGCTGGAGCATACTACTGGGTGAAAGCATCAAGAAAGGAAGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGGCTTGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTTGAACAAATGAGAAAGGAGCTTCAGTTGAGTGAAAAAGGCATGGTTTATGTCAAAGGTATTTTTGAGCAATGATTATTACTTCTCTTTTCTTTTTCCCTTTTTTTCCTCTTTAGCATAGTTGAAGGAATCTTCATGAGTTACAATTCTAGTTCCCAAATGCTAAATCTTCAATAACTCAATCAATCAGTCCAGATTCTGGAAAAGATTCAAACTTGTACAACAATTTTCAACACATGAATCATACAAATACATCAAAATTTGAATATGCCCT

Coding sequence (CDS)

ATGGCGGCCAAGCTTCTACCATCATCCAATCTCTATCCTCCCCCTTCCAACTCCTTCTCCGCCGTAGACCTAACTCCGCGCCCATGCTTCGGCCGACCTCGCACTCATTTCAACCAGCACAGATCGGTAACCGTCAGAGTCAATGCGGAACCGCTCGTCGTTCTCCAAGACCACCACAACTCCGCCGTCCTCCTGGCTGAGACAGTCGGCTATTCCATGGCTAGTTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCCTATGGTCTCTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACGTTCGTTAGCGATGGAGAATCGAAGAAGGAGCCGAATCAGATTGCTGGAGAGATCTTGTCGTTCTTCACTCGTAATAATTTCCAAGTCACAGACAGAGGTGAAACCATAACGTTTGAAGGAACAATGGTGCCGAGTCGAGGGCAAGCGGCATTGTTGACATTCTGTACGTGCATTAGCTTGGCTAGCGTGGGTCTTGTTCTGACCATAACGTTTCCAGATTTTGGCAACAATTGGTTTTGGATTAGCAGCTTGAGTCCCTTAGCTGGAGCATACTACTGGGTGAAAGCATCAAGAAAGGAAGAGATCAAAGTTAAAATGATAGTTGGAGAAGATGGAAGGCTTGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTTGAACAAATGAGAAAGGAGCTTCAGTTGAGTGAAAAAGGCATGGTTTATGTCAAAGGTATTTTTGAGCAATGA

Protein sequence

MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHNSAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ

Homology

[Close]

BLAST of CcUC01G008310 vs. NCBI nr
Match: XP_038874658.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Benincasa hispida])

HSP 1 Score: 479.9 bits (1234), Expect = 1.3e-131
Identity = 244/255 (95.69%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+L P PSNSFSAVDLTPRPCFGRPRTHF  HRSVTVRVNAEPLVVLQDHHN
Sbjct: 1   MAAKLLPSSHLCPLPSNSFSAVDLTPRPCFGRPRTHFKPHRSVTVRVNAEPLVVLQDHHN 60

Query: 61  SAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SA LLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKT VS+GESKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTLVSEGESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF
Sbjct: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEIIVQGDDQQVEQMRKELQ
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMRKELQ 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]

BLAST of CcUC01G008310 vs. NCBI nr
Match: XP_004143764.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucumis sativus] >KGN51132.1 hypothetical protein Csa_008050 [Cucumis sativus])

HSP 1 Score: 467.6 bits (1202), Expect = 6.8e-128
Identity = 234/255 (91.76%), Postives = 247/255 (96.86%), Query Frame = 0


Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+LYP PSNSFSA+DL+PRPCF RPRTHF  HRSVTVRV+AEPLV LQDH+N
Sbjct: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60

Query: 61  SAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SA LLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+  SKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT+PDF
Sbjct: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEI+VQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]

BLAST of CcUC01G008310 vs. NCBI nr
Match: KAA0066087.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 [Cucumis melo var. makuwa] >TYJ99810.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 [Cucumis melo var. makuwa])

HSP 1 Score: 463.4 bits (1191), Expect = 1.3e-126
Identity = 233/255 (91.37%), Postives = 245/255 (96.08%), Query Frame = 0


Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+ YP PSNSFSAVDL+PRPCF RPRTHF  HRSVTV+VNAEPL+ LQ+H+N
Sbjct: 1   MAAKLLPSSHFYPLPSNSFSAVDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60

Query: 61  SAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SA LLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+ ESKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTITFPDF
Sbjct: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]

BLAST of CcUC01G008310 vs. NCBI nr
Match: XP_008465491.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucumis melo])

HSP 1 Score: 463.0 bits (1190), Expect = 1.7e-126
Identity = 232/255 (90.98%), Postives = 245/255 (96.08%), Query Frame = 0


Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+ YP PSNSFSA+DL+PRPCF RPRTHF  HRSVTV+VNAEPL+ LQ+H+N
Sbjct: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60

Query: 61  SAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SA LLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+ ESKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTITFPDF
Sbjct: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]

BLAST of CcUC01G008310 vs. NCBI nr
Match: XP_022938901.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita moschata] >KAG6579098.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 447.6 bits (1150), Expect = 7.3e-122
Identity = 232/260 (89.23%), Postives = 237/260 (91.15%), Query Frame = 0


Query: 1   MAAKLLPSSNLYPPPS-----NSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVL 60
           MA K LP S+LYP PS     +SFSA DLTPRPCFGRPRTHF   RSV VRVN EPLV  
Sbjct: 1   MAVKFLP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60

Query: 61  QDHHNSAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKK 120
           QDHHNSA LLAE+VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+GESKK
Sbjct: 61  QDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120

Query: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQM 240
           TFPD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEIIVQGDDQQVEQM
Sbjct: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 256
           RKELQLSEKGMVYVKGIFEQ
Sbjct: 241 RKELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of CcUC01G008310 vs. ExPASy Swiss-Prot
Match: Q9LSE4 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB1 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.8e-84
Identity = 169/233 (72.53%), Postives = 191/233 (81.97%), Query Frame = 0


Query: 35  THFNQHRSVTVRVNAEPLVVL-----------QDHHNSAVLLAE-TVGYSMASYYTSLGL 94
           T  N+  +VT  +  EPL V+           + + NS +L+ E T GYS+ASYYTSLGL
Sbjct: 35  TKRNRVSAVTAMI-VEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGL 94

Query: 95  FVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQIAGEILSFFTRNNFQVTDRGETI 154
           FVISVPGLWSLIKRSVKSK+V+KTFV + + KKEP Q+AGEILSFFTR NF +TDRGETI
Sbjct: 95  FVISVPGLWSLIKRSVKSKIVRKTFVVN-DVKKEPKQVAGEILSFFTRKNFNITDRGETI 154

Query: 155 TFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDFGNNWFWISSLSPLAGAYYWVKA 214
           TFEG MVPSRGQAALLTFCTCISLASVGLVLTIT PDFGNNWF+I  LSPLAG YYW KA
Sbjct: 155 TFEGKMVPSRGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKA 214

Query: 215 SRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ 256
           SRKEEIKVKM+VG  GRL EI+VQGDD QVE+MRKELQL+EKGMVYVKG+FE+
Sbjct: 215 SRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265

[Close]

BLAST of CcUC01G008310 vs. ExPASy TrEMBL
Match: A0A0A0KRU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.3e-128
Identity = 234/255 (91.76%), Postives = 247/255 (96.86%), Query Frame = 0


Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+LYP PSNSFSA+DL+PRPCF RPRTHF  HRSVTVRV+AEPLV LQDH+N
Sbjct: 1   MAAKLLPSSHLYPLPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVALQDHNN 60

Query: 61  SAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SA LLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+  SKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT+PDF
Sbjct: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITYPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEI+VQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]

BLAST of CcUC01G008310 vs. ExPASy TrEMBL
Match: A0A5A7VG78 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00110 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 6.2e-127
Identity = 233/255 (91.37%), Postives = 245/255 (96.08%), Query Frame = 0


Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+ YP PSNSFSAVDL+PRPCF RPRTHF  HRSVTV+VNAEPL+ LQ+H+N
Sbjct: 1   MAAKLLPSSHFYPLPSNSFSAVDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60

Query: 61  SAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SA LLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+ ESKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTITFPDF
Sbjct: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]

BLAST of CcUC01G008310 vs. ExPASy TrEMBL
Match: A0A1S3CPE0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503108 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 8.1e-127
Identity = 232/255 (90.98%), Postives = 245/255 (96.08%), Query Frame = 0


Query: 1   MAAKLLPSSNLYPPPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVLQDHHN 60
           MAAKLLPSS+ YP PSNSFSA+DL+PRPCF RPRTHF  HRSVTV+VNAEPL+ LQ+H+N
Sbjct: 1   MAAKLLPSSHFYPLPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQEHNN 60

Query: 61  SAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQI 120
           SA LLAE+VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+ ESKKEPNQI
Sbjct: 61  SAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQI 120

Query: 121 AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180
           AGEILSFFTRNNFQVT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTITFPDF
Sbjct: 121 AGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPDF 180

Query: 181 GNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQ 240
           GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQ++QMRKEL+
Sbjct: 181 GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQMRKELK 240

Query: 241 LSEKGMVYVKGIFEQ 256
           LSEKGMVYVKGIFEQ
Sbjct: 241 LSEKGMVYVKGIFEQ 255

[Close]

BLAST of CcUC01G008310 vs. ExPASy TrEMBL
Match: A0A6J1FEF5 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111444976 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.5e-122
Identity = 232/260 (89.23%), Postives = 237/260 (91.15%), Query Frame = 0


Query: 1   MAAKLLPSSNLYPPPS-----NSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVVL 60
           MA K LP S+LYP PS     +SFSA DLTPRPCFGRPRTHF   RSV VRVN EPLV  
Sbjct: 1   MAVKFLP-SHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAF 60

Query: 61  QDHHNSAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESKK 120
           QDHHNSA LLAE+VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+GESKK
Sbjct: 61  QDHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120

Query: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 APNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQM 240
           TFPD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIVGEDG LGEIIVQGDDQQVEQM
Sbjct: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 256
           RKELQLSEKGMVYVKGIFEQ
Sbjct: 241 RKELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of CcUC01G008310 vs. ExPASy TrEMBL
Match: A0A6J1JUD8 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488985 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 2.4e-118
Identity = 227/261 (86.97%), Postives = 233/261 (89.27%), Query Frame = 0


Query: 1   MAAKLLPSSNLYP------PPSNSFSAVDLTPRPCFGRPRTHFNQHRSVTVRVNAEPLVV 60
           MA K LP S+LYP      PPS SFSA DLTPRPCFG PRTHF   RS+ VRVN EPLV 
Sbjct: 1   MAVKFLP-SHLYPLSSPSLPPS-SFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVA 60

Query: 61  LQDHHNSAVLLAETVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSDGESK 120
            QD HNS  LLAE+VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVS+GESK
Sbjct: 61  FQDQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESK 120

Query: 121 KEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLT 180
           K PNQ AGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLT
Sbjct: 121 KAPNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLT 180

Query: 181 ITFPDFGNNWFWISSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQ 240
           ITFPD GNNWFW+SSLSPLAGAYYWVKASRKEEIKVKMIV EDG LGEIIVQGDDQQVEQ
Sbjct: 181 ITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQ 240

Query: 241 MRKELQLSEKGMVYVKGIFEQ 256
           MRKELQLSEKGMVYVKGIFEQ
Sbjct: 241 MRKELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of CcUC01G008310 vs. TAIR 10
Match: AT3G26710.1 (cofactor assembly of complex C )

HSP 1 Score: 313.2 bits (801), Expect = 2.0e-85
Identity = 169/233 (72.53%), Postives = 191/233 (81.97%), Query Frame = 0


Query: 35  THFNQHRSVTVRVNAEPLVVL-----------QDHHNSAVLLAE-TVGYSMASYYTSLGL 94
           T  N+  +VT  +  EPL V+           + + NS +L+ E T GYS+ASYYTSLGL
Sbjct: 35  TKRNRVSAVTAMI-VEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGL 94

Query: 95  FVISVPGLWSLIKRSVKSKVVKKTFVSDGESKKEPNQIAGEILSFFTRNNFQVTDRGETI 154
           FVISVPGLWSLIKRSVKSK+V+KTFV + + KKEP Q+AGEILSFFTR NF +TDRGETI
Sbjct: 95  FVISVPGLWSLIKRSVKSKIVRKTFVVN-DVKKEPKQVAGEILSFFTRKNFNITDRGETI 154

Query: 155 TFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDFGNNWFWISSLSPLAGAYYWVKA 214
           TFEG MVPSRGQAALLTFCTCISLASVGLVLTIT PDFGNNWF+I  LSPLAG YYW KA
Sbjct: 155 TFEGKMVPSRGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKA 214

Query: 215 SRKEEIKVKMIVGEDGRLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ 256
           SRKEEIKVKM+VG  GRL EI+VQGDD QVE+MRKELQL+EKGMVYVKG+FE+
Sbjct: 215 SRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265

The following BLAST results are available for this feature:

BLAST of CcUC01G008310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874658.1	1.3e-131	95.69	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Benincasa ...	[more]
XP_004143764.1	6.8e-128	91.76	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucumis sa...	[more]
KAA0066087.1	1.3e-126	91.37	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 [Cucumis melo var. makuwa]...	[more]
XP_008465491.1	1.7e-126	90.98	PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic ...	[more]
XP_022938901.1	7.3e-122	89.23	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]

BLAST of CcUC01G008310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSE4	2.8e-84	72.53	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidop...	[more]

BLAST of CcUC01G008310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRU8	3.3e-128	91.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1	[more]
A0A5A7VG78	6.2e-127	91.37	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuw...	[more]
A0A1S3CPE0	8.1e-127	90.98	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis ...	[more]
A0A6J1FEF5	3.5e-122	89.23	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]
A0A6J1JUD8	2.4e-118	86.97	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]

BLAST of CcUC01G008310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26710.1	2.0e-85	72.53	cofactor assembly of complex C	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PFAM	PF12046	CCB1	coord: 75..241 e-value: 3.5E-55 score: 185.9
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PANTHER	PTHR35302	FAMILY NOT NAMED	coord: 2..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G008310.1	CcUC01G008310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane