CcUC01G005990 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G005990
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr01: 6051004 .. 6051690 (-)
RNA-Seq ExpressionCcUC01G005990
SyntenyCcUC01G005990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCGGATCCAGAAAGCGTCTTCAATGTGGTGGTTTCTTTGGAGAAGAAGCCGGAGGAGAGGGAGCCATCAGCGTAAGAGTAAAGGTATCGGCAGGGGGAGTGGAGGCGTGTGTGGTTACAGAGATGGGAAGGCGCATGGGGGAGGAGACGGCAGTGAGGGTCGTAGCAGTGAAAAGGAGAGAACGAAGAGGAGCGGCGGGGGAGGAAGGCGGAGGAGGGAGGGTGTTGAGAGCAGTTGCGGCAGGCGGAGCATTTTACCCAAACGAGGTCGCTGCCAGTATCAGCGACGAGGAGGAGGCTTTGGGGAGGGGTGCCAAGACGGAGGTCGACGAAGTATTGGCCGGAGCCGGTGGAGGCGCCGGAGATGAGAGGGGATTTGAGAGTGGGGTTAGGGCGAGGGGGGAGGGGGAGTGCGGAGAAGAGGAGGGAGAGGCGGTGAGTGTCGGAGGAGAGGGCTTGGGAAGGGGAGGAGAAGGGGGTTTTATGGAGGAGGGGGAGCTTCAGATAGTCGGCGGTGGCGGCATTGGCATTGGCATTGGAGAGTTGTGTGAGAGAGAAGAGAAGAAGAATGAGATGGAAGAAGGGGGAAATGGAGAGCGTTGTTGGTTGCATCTTCGATTTGGAAACAACACTGAAATGCGTAAAACTAAGAAAACACGGATGAGGACGGAACAAATGTGA

mRNA sequence

ATGGATTTCGGATCCAGAAAGCGTCTTCAATGTGGTGGTTTCTTTGGAGAAGAAGCCGGAGGAGAGGGAGCCATCAGCGTAAGAGTAAAGGTATCGGCAGGGGGAGTGGAGGCGTGTGTGGTTACAGAGATGGGAAGGCGCATGGGGGAGGAGACGGCAGTGAGGGTCGTAGCAGTGAAAAGGAGAGAACGAAGAGGAGCGGCGGGGGAGGAAGGCGGAGGAGGGAGGGTGTTGAGAGCAGTTGCGGCAGGCGGAGCATTTTACCCAAACGAGGTCGCTGCCAGTATCAGCGACGAGGAGGAGGCTTTGGGGAGGGGTGCCAAGACGGAGGTCGACGAAGTATTGGCCGGAGCCGGTGGAGGCGCCGGAGATGAGAGGGGATTTGAGAGTGGGGTTAGGGCGAGGGGGGAGGGGGAGTGCGGAGAAGAGGAGGGAGAGGCGGTGAGTGTCGGAGGAGAGGGCTTGGGAAGGGGAGGAGAAGGGGGTTTTATGGAGGAGGGGGAGCTTCAGATAGTCGGCGGTGGCGGCATTGGCATTGGCATTGGAGAGTTGTGTGAGAGAGAAGAGAAGAAGAATGAGATGGAAGAAGGGGGAAATGGAGAGCGTTGTTGGTTGCATCTTCGATTTGGAAACAACACTGAAATGCGTAAAACTAAGAAAACACGGATGAGGACGGAACAAATGTGA

Coding sequence (CDS)

ATGGATTTCGGATCCAGAAAGCGTCTTCAATGTGGTGGTTTCTTTGGAGAAGAAGCCGGAGGAGAGGGAGCCATCAGCGTAAGAGTAAAGGTATCGGCAGGGGGAGTGGAGGCGTGTGTGGTTACAGAGATGGGAAGGCGCATGGGGGAGGAGACGGCAGTGAGGGTCGTAGCAGTGAAAAGGAGAGAACGAAGAGGAGCGGCGGGGGAGGAAGGCGGAGGAGGGAGGGTGTTGAGAGCAGTTGCGGCAGGCGGAGCATTTTACCCAAACGAGGTCGCTGCCAGTATCAGCGACGAGGAGGAGGCTTTGGGGAGGGGTGCCAAGACGGAGGTCGACGAAGTATTGGCCGGAGCCGGTGGAGGCGCCGGAGATGAGAGGGGATTTGAGAGTGGGGTTAGGGCGAGGGGGGAGGGGGAGTGCGGAGAAGAGGAGGGAGAGGCGGTGAGTGTCGGAGGAGAGGGCTTGGGAAGGGGAGGAGAAGGGGGTTTTATGGAGGAGGGGGAGCTTCAGATAGTCGGCGGTGGCGGCATTGGCATTGGCATTGGAGAGTTGTGTGAGAGAGAAGAGAAGAAGAATGAGATGGAAGAAGGGGGAAATGGAGAGCGTTGTTGGTTGCATCTTCGATTTGGAAACAACACTGAAATGCGTAAAACTAAGAAAACACGGATGAGGACGGAACAAATGTGA

Protein sequence

MDFGSRKRLQCGGFFGEEAGGEGAISVRVKVSAGGVEACVVTEMGRRMGEETAVRVVAVKRRERRGAAGEEGGGGRVLRAVAAGGAFYPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGECGEEEGEAVSVGGEGLGRGGEGGFMEEGELQIVGGGGIGIGIGELCEREEKKNEMEEGGNGERCWLHLRFGNNTEMRKTKKTRMRTEQM
Homology
BLAST of CcUC01G005990 vs. NCBI nr
Match: KAF7827865.1 (glycine-rich cell wall structural protein 1.0-like [Senna tora])

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-20
Identity = 76/144 (52.78%), Postives = 92/144 (63.89%), Query Frame = 0

Query: 17  EEAGGEGAISVRVKVSAGGVEACVVTEM-GRRMGEETAVRVVAVKRRERRGAAGEEGGGG 76
           EE  G+G + V + VS   V+  +VT + G R+G+E A RVVA+   E  G AGEEGG G
Sbjct: 121 EEPAGDGPVRVGILVSTRAVDPGMVTVVTGFRVGDEAAGRVVAMVGGECGGVAGEEGGSG 180

Query: 77  RVLRAVAAGGAFYPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRAR 136
             + AVAAGGA  P+E+AA + DEEEAL R A +E+DEVLAGAGGGAGDE GFE G    
Sbjct: 181 WAVGAVAAGGALDPDEIAAGVGDEEEALRRSADSEIDEVLAGAGGGAGDEGGFEGGAAVE 240

Query: 137 GEGECGEEEGEAVSVGGEGLGRGG 160
           G        GE V VGGE +G  G
Sbjct: 241 G--------GETVEVGGEKVGGRG 256

BLAST of CcUC01G005990 vs. NCBI nr
Match: KAB8681452.1 (hypothetical protein FH972_026331 [Carpinus fangiana])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-07
Identity = 66/149 (44.30%), Postives = 80/149 (53.69%), Query Frame = 0

Query: 14  FFGEEAGGEGAISVRVKVSAGGVE---ACVVTEMGRRMGEETAVRVVAVKRRERRGAAGE 73
           F GEEA G+GA+SV V V+A GVE   A VV     R+G+E A  V  +   E  G AGE
Sbjct: 25  FLGEEATGKGAVSVGVLVTARGVEPEPAGVVVVGAWRVGDEPARGVEVMVGGEGGGMAGE 84

Query: 74  EGGGGRVLRAVA---AGGAFYPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDERG 133
           EGG G +  + A    GGA  P+EV A + DEEE L RGA+ +  +VL GAGGG GD  G
Sbjct: 85  EGGYGDLGGSGAIGFIGGALDPDEVVAGVGDEEEGLRRGAQAQGHKVLVGAGGGPGDHWG 144

Query: 134 FESGVRARGEGECGEEEGEAVSVGGEGLG 157
              G    G   CG   G    +    LG
Sbjct: 145 LGLG----GLHGCGGLRGVGSPIREPRLG 169

BLAST of CcUC01G005990 vs. NCBI nr
Match: KDO70110.1 (hypothetical protein CISIN_1g029800mg [Citrus sinensis])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-07
Identity = 64/142 (45.07%), Postives = 78/142 (54.93%), Query Frame = 0

Query: 36  VEACVVTEMGRRMGEETAV-RVVAVKRRERRGAAGEEGGGGRVLRAVAAGGAFYPNEVAA 95
           VE  V+  +  R+G+E     V AV  RE  G AGE+GG G    AVAAG A  P+EVAA
Sbjct: 54  VEEGVIARVVARVGDEALTGGVEAVVGREGGGVAGEKGGTGGAEGAVAAGRAGDPDEVAA 113

Query: 96  SISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGECGEEEGEAVSVGGEG 155
            I +EEE L RGA+ E DEVLAGAGG AG +  FE         E GE + +        
Sbjct: 114 GIGNEEEVLRRGAEVEGDEVLAGAGGSAGSDGRFE-------VVEMGEIKRD-------- 173

Query: 156 LGRGGEGGFMEEGELQIVGGGG 177
            G GG   F+E+ E +I  GGG
Sbjct: 174 -GTGGMVSFVEKWEFEIFCGGG 179

BLAST of CcUC01G005990 vs. NCBI nr
Match: GAY47055.1 (hypothetical protein CUMW_101650 [Citrus unshiu])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-07
Identity = 64/142 (45.07%), Postives = 78/142 (54.93%), Query Frame = 0

Query: 36  VEACVVTEMGRRMGEETAV-RVVAVKRRERRGAAGEEGGGGRVLRAVAAGGAFYPNEVAA 95
           VE  V+  +  R+G+E     V AV  RE  G AGE+GG G    AVAAG A  P+EVAA
Sbjct: 17  VEEGVIARVVARVGDEALTGGVEAVVGREGGGVAGEKGGTGGAEGAVAAGRAGDPDEVAA 76

Query: 96  SISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGECGEEEGEAVSVGGEG 155
            I +EEE L RGA+ E DEVLAGAGG AG +  FE         E GE + +        
Sbjct: 77  GIGNEEEVLRRGAEVEGDEVLAGAGGSAGSDGRFE-------VVEMGEIKRD-------- 136

Query: 156 LGRGGEGGFMEEGELQIVGGGG 177
            G GG   F+E+ E +I  GGG
Sbjct: 137 -GTGGMVSFVEKWEFEIFCGGG 142

BLAST of CcUC01G005990 vs. NCBI nr
Match: XP_011468691.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-05
Identity = 46/93 (49.46%), Postives = 53/93 (56.99%), Query Frame = 0

Query: 66  GAAGEEGGGGRVLRAVAAGGAFYPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDE 125
           G AGE+GG G    A  AGGA  P+EV A + DEEE L RGA+ EVDEVLAGA GGA D+
Sbjct: 41  GVAGEKGGAGEAAGARFAGGAAEPDEVVACVGDEEEGLQRGAEAEVDEVLAGASGGARDD 100

Query: 126 RGFESGVRARGEGECGEEEGEAVSVGGEGLGRG 159
            G        G G  G + G      G G+G G
Sbjct: 101 GG--------GGGGNGGQRGGGSRTRGLGVGVG 125

BLAST of CcUC01G005990 vs. ExPASy TrEMBL
Match: A0A1D1YVI8 (Uncharacterized protein (Fragment) OS=Anthurium amnicola OX=1678845 GN=g.22794 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = 0

Query: 9   LQCGGFFGEEAGGEGAISVRVKVSAGGVEACVVTEMGR---RMGEETAVRVVAVKRRERR 68
           ++ GG  GEEAGG G + VRV V+AG V+A       R   R+  ETA+ VVAV+  E  
Sbjct: 70  IEGGGLPGEEAGGRGVVGVRVAVAAGAVDAGAWAGRPRPRVRVRYETALPVVAVEWGEGG 129

Query: 69  GAAGEEGGGGRVLRAVAAGGAFYPNEVAASISDE 100
           G AGEEGG  RV  A AA GA +P+EVAA + DE
Sbjct: 130 GVAGEEGGARRVSGAFAARGAPHPDEVAAGVGDE 163

BLAST of CcUC01G005990 vs. ExPASy TrEMBL
Match: A0A5N6L4M9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026331 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.8e-08
Identity = 66/149 (44.30%), Postives = 80/149 (53.69%), Query Frame = 0

Query: 14  FFGEEAGGEGAISVRVKVSAGGVE---ACVVTEMGRRMGEETAVRVVAVKRRERRGAAGE 73
           F GEEA G+GA+SV V V+A GVE   A VV     R+G+E A  V  +   E  G AGE
Sbjct: 25  FLGEEATGKGAVSVGVLVTARGVEPEPAGVVVVGAWRVGDEPARGVEVMVGGEGGGMAGE 84

Query: 74  EGGGGRVLRAVA---AGGAFYPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDERG 133
           EGG G +  + A    GGA  P+EV A + DEEE L RGA+ +  +VL GAGGG GD  G
Sbjct: 85  EGGYGDLGGSGAIGFIGGALDPDEVVAGVGDEEEGLRRGAQAQGHKVLVGAGGGPGDHWG 144

Query: 134 FESGVRARGEGECGEEEGEAVSVGGEGLG 157
              G    G   CG   G    +    LG
Sbjct: 145 LGLG----GLHGCGGLRGVGSPIREPRLG 169

BLAST of CcUC01G005990 vs. ExPASy TrEMBL
Match: A0A067FVC2 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029800mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 64/142 (45.07%), Postives = 78/142 (54.93%), Query Frame = 0

Query: 36  VEACVVTEMGRRMGEETAV-RVVAVKRRERRGAAGEEGGGGRVLRAVAAGGAFYPNEVAA 95
           VE  V+  +  R+G+E     V AV  RE  G AGE+GG G    AVAAG A  P+EVAA
Sbjct: 54  VEEGVIARVVARVGDEALTGGVEAVVGREGGGVAGEKGGTGGAEGAVAAGRAGDPDEVAA 113

Query: 96  SISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGECGEEEGEAVSVGGEG 155
            I +EEE L RGA+ E DEVLAGAGG AG +  FE         E GE + +        
Sbjct: 114 GIGNEEEVLRRGAEVEGDEVLAGAGGSAGSDGRFE-------VVEMGEIKRD-------- 173

Query: 156 LGRGGEGGFMEEGELQIVGGGG 177
            G GG   F+E+ E +I  GGG
Sbjct: 174 -GTGGMVSFVEKWEFEIFCGGG 179

BLAST of CcUC01G005990 vs. ExPASy TrEMBL
Match: A0A2H5P4P8 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_101650 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 64/142 (45.07%), Postives = 78/142 (54.93%), Query Frame = 0

Query: 36  VEACVVTEMGRRMGEETAV-RVVAVKRRERRGAAGEEGGGGRVLRAVAAGGAFYPNEVAA 95
           VE  V+  +  R+G+E     V AV  RE  G AGE+GG G    AVAAG A  P+EVAA
Sbjct: 17  VEEGVIARVVARVGDEALTGGVEAVVGREGGGVAGEKGGTGGAEGAVAAGRAGDPDEVAA 76

Query: 96  SISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGECGEEEGEAVSVGGEG 155
            I +EEE L RGA+ E DEVLAGAGG AG +  FE         E GE + +        
Sbjct: 77  GIGNEEEVLRRGAEVEGDEVLAGAGGSAGSDGRFE-------VVEMGEIKRD-------- 136

Query: 156 LGRGGEGGFMEEGELQIVGGGG 177
            G GG   F+E+ E +I  GGG
Sbjct: 137 -GTGGMVSFVEKWEFEIFCGGG 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7827865.13.2e-2052.78glycine-rich cell wall structural protein 1.0-like [Senna tora][more]
KAB8681452.11.4e-0744.30hypothetical protein FH972_026331 [Carpinus fangiana][more]
KDO70110.12.4e-0745.07hypothetical protein CISIN_1g029800mg [Citrus sinensis][more]
GAY47055.12.4e-0745.07hypothetical protein CUMW_101650 [Citrus unshiu][more]
XP_011468691.11.7e-0549.46PREDICTED: glycine-rich cell wall structural protein 1.0-like [Fragaria vesca su... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1D1YVI85.2e-0851.06Uncharacterized protein (Fragment) OS=Anthurium amnicola OX=1678845 GN=g.22794 P... [more]
A0A5N6L4M96.8e-0844.30Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026331 PE=4 SV=1[more]
A0A067FVC21.2e-0745.07Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029800mg PE=4 SV=1[more]
A0A2H5P4P81.2e-0745.07Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_101650 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G005990.1CcUC01G005990.1mRNA