CcUC01G003640 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G003640
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	protein LITTLE ZIPPER 1-like
Location	CicolChr01: 3628716 .. 3629362 (-)
RNA-Seq Expression	CcUC01G003640
Synteny	CcUC01G003640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCATACAATATTCTACTAGAAAGAAAGGCAAAAGTTAAGAAGCTGCCATAGAAGAATAATGTGCATCAGTGCAACGCAGAGTGTTCTGTTTCATACAATTCAAAGTTCCAAGAACAGGAGAAGTTCAAAAAGATCCAAACTTCAAGTTCTGAGGCTTACCAGGTTGCTTTCTTAAAACAACCTCATTTCAACTTCTTGATGGTTTTTAGGGGACTTTTGTTTATTGGGGTTTTTTTTGGTTTCTGTTTTGTTTTAGCAGGAGGAGATGTGAAGAGAAGCTGGGGAAGGATATTGAGCTGAAGAATCTGCAGCTATATCTGGAGAATCAGACCATAATTGAAGAGAATGAGAAGCTAAGAGAGAAAGCCAATATCCTTCATCAAGAGAATTTGGCTTTAATGACTGAGTTTCAGAAAAAATTCCCACATTTGGAACAGAGAAAGTGATGGGAATCATCAGAGGGTGACATCGTTTTATCTCTCTCCCTCTCTCTCTAGGGAGGGTGAGAAGGTCTGAGTGATTTCTAAATGTATTGAACTCTTTATTCAATATATATGTGCCATTTATCTAGAGTTGACATAACTTGAAGAATAGAGTAATTTATATAGTAGTGAGAGGTTGGGAGTTGGAAATCTTTTTCAAGG

mRNA sequence

CTTTCATACAATATTCTACTAGAAAGAAAGGCAAAAGTTAAGAAGCTGCCATAGAAGAATAATGTGCATCAGTGCAACGCAGAGTGTTCTGTTTCATACAATTCAAAGTTCCAAGAACAGGAGAAGTTCAAAAAGATCCAAACTTCAAGTTCTGAGGCTTACCAGCAGGAGGAGATGTGAAGAGAAGCTGGGGAAGGATATTGAGCTGAAGAATCTGCAGCTATATCTGGAGAATCAGACCATAATTGAAGAGAATGAGAAGCTAAGAGAGAAAGCCAATATCCTTCATCAAGAGAATTTGGCTTTAATGACTGAGTTTCAGAAAAAATTCCCACATTTGGAACAGAGAAAGTGATGGGAATCATCAGAGGGTGACATCGTTTTATCTCTCTCCCTCTCTCTCTAGGGAGGGTGAGAAGGTCTGAGTGATTTCTAAATGTATTGAACTCTTTATTCAATATATATGTGCCATTTATCTAGAGTTGACATAACTTGAAGAATAGAGTAATTTATATAGTAGTGAGAGGTTGGGAGTTGGAAATCTTTTTCAAGG

Coding sequence (CDS)

ATGTGCATCAGTGCAACGCAGAGTGTTCTGTTTCATACAATTCAAAGTTCCAAGAACAGGAGAAGTTCAAAAAGATCCAAACTTCAAGTTCTGAGGCTTACCAGCAGGAGGAGATGTGAAGAGAAGCTGGGGAAGGATATTGAGCTGAAGAATCTGCAGCTATATCTGGAGAATCAGACCATAATTGAAGAGAATGAGAAGCTAAGAGAGAAAGCCAATATCCTTCATCAAGAGAATTTGGCTTTAATGACTGAGTTTCAGAAAAAATTCCCACATTTGGAACAGAGAAAGTGA

Protein sequence

MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK

Homology

[Close]

BLAST of CcUC01G003640 vs. NCBI nr
Match: KAE8647881.1 (hypothetical protein Csa_000025 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
          MC+SATQSVLFHTIQSSKNRRSSKRS  QVLRLTSRRRCEEKLGKDIELKNLQLYLENQT
Sbjct: 1  MCVSATQSVLFHTIQSSKNRRSSKRSNFQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60

Query: 61 IIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 98
          IIEENEKLREKANILHQENLAL+TEFQKKFPHLEQRK
Sbjct: 61 IIEENEKLREKANILHQENLALLTEFQKKFPHLEQRK 97

[Close]

BLAST of CcUC01G003640 vs. NCBI nr
Match: XP_022922429.1 (protein LITTLE ZIPPER 1-like [Cucurbita moschata])

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36
Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
          MCISATQS+LFH IQ+SKNRR SKRSKLQVLRLT RRRCEEKLGKDIELKNLQLYL+NQT
Sbjct: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLT-RRRCEEKLGKDIELKNLQLYLKNQT 60

Query: 61 IIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 98
          II+EN+KLREKANILHQEN+ALMTEFQKKFPHL QRK
Sbjct: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 96

[Close]

BLAST of CcUC01G003640 vs. NCBI nr
Match: KAG6579456.1 (Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016928.1 Protein LITTLE ZIPPER 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-35
Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
          MCI ATQS+LFH IQ+SKN+R SKRSKLQVLRLT RRRCEEKLGKDIELKNLQLYL+NQT
Sbjct: 1  MCIRATQSILFHQIQTSKNKRRSKRSKLQVLRLT-RRRCEEKLGKDIELKNLQLYLKNQT 60

Query: 61 IIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 98
          II+EN+KLREKANILHQEN+ALMTEFQKKFPHL QRK
Sbjct: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 96

[Close]

BLAST of CcUC01G003640 vs. NCBI nr
Match: KAG7036101.1 (Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 82/98 (83.67%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRC-EEKLGKDIELKNLQLYLENQ 60
          MCI+ATQ +LFH I +SKNRR  KRSKLQV RL+SRRR  EEK GKDIELKNLQLYLENQ
Sbjct: 1  MCITATQRILFHQIHTSKNRRRLKRSKLQVQRLSSRRRSFEEKQGKDIELKNLQLYLENQ 60

Query: 61 TIIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 98
          TIIEENEKLREKANILHQENLALMTEF KKFPH +QRK
Sbjct: 61 TIIEENEKLREKANILHQENLALMTEFHKKFPHFDQRK 98

[Close]

BLAST of CcUC01G003640 vs. NCBI nr
Match: XP_023534553.1 (protein LITTLE ZIPPER 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 80/97 (82.47%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
          MCI+ATQ +LFH I +SKNRR  KRSKLQV RL+ RR  EEK GKDIELKNLQLYLENQT
Sbjct: 1  MCITATQRILFHQIHTSKNRRRLKRSKLQVQRLSRRRSFEEKQGKDIELKNLQLYLENQT 60

Query: 61 IIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 98
          IIEENEKLREKANILHQENLALMTEF KKFPH +QRK
Sbjct: 61 IIEENEKLREKANILHQENLALMTEFHKKFPHFDQRK 97

[Close]

BLAST of CcUC01G003640 vs. ExPASy Swiss-Prot
Match: Q9LZX5 (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.9e-07
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 21 RSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILHQENL 80
          +S  ++ L++L LT RRR   K  K++E++NL+L++ENQ+II ENE L++KA +LH EN 
Sbjct: 28 KSKTQTHLRILNLTRRRRL-LKEQKEMEMRNLKLFVENQSIIRENEALKKKALLLHHENN 87

Query: 81 ALMTEFQKKF 91
          AL      K+
Sbjct: 88 ALFALLHPKY 96

[Close]

BLAST of CcUC01G003640 vs. ExPASy Swiss-Prot
Match: F4IG60 (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.9e-06
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1   MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
           MC+S++++  F    +        +S +++ RL+ RRR   +  K +E+ NL+LY+ENQ 
Sbjct: 44  MCLSSSET--FSDTPTRLVLYLKTQSHVRIPRLSRRRRMWRE-EKKMEMINLKLYVENQN 103

Query: 61  IIEENEKLREKANILHQENLALMTEFQKK 90
           II ENEKL++KA +LHQEN  L +  Q K
Sbjct: 104 IIRENEKLKKKALLLHQENKTLFSLLQTK 129

[Close]

BLAST of CcUC01G003640 vs. ExPASy TrEMBL
Match: A0A0A0KKF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157390 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.4e-39
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
          MC+SATQSVLFHTIQSSKNRRSSKRS  QVLRLT RRRCEEKLGKDIELKNLQLYLENQT
Sbjct: 1  MCVSATQSVLFHTIQSSKNRRSSKRSNFQVLRLT-RRRCEEKLGKDIELKNLQLYLENQT 60

Query: 61 IIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 98
          IIEENEKLREKANILHQENLAL+TEFQKKFPHLEQRK
Sbjct: 61 IIEENEKLREKANILHQENLALLTEFQKKFPHLEQRK 96

[Close]

BLAST of CcUC01G003640 vs. ExPASy TrEMBL
Match: A0A6J1E3C5 (protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430426 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
          MCISATQS+LFH IQ+SKNRR SKRSKLQVLRLT RRRCEEKLGKDIELKNLQLYL+NQT
Sbjct: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLT-RRRCEEKLGKDIELKNLQLYLKNQT 60

Query: 61 IIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 98
          II+EN+KLREKANILHQEN+ALMTEFQKKFPHL QRK
Sbjct: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 96

[Close]

BLAST of CcUC01G003640 vs. ExPASy TrEMBL
Match: A0A6J1DZF5 (protein LITTLE ZIPPER 2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026023 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.4e-31
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1   MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRC-EEKLGKDIELKNLQLYLENQ 60
           MCISAT+S  FH I +SKNRR  KRSKLQV RLTSRRRC EEK+GKDIELKNLQLYLENQ
Sbjct: 17  MCISATESSPFHQIHTSKNRRRLKRSKLQVQRLTSRRRCTEEKVGKDIELKNLQLYLENQ 76

Query: 61  TIIEENEKLREKANILHQENLALMTEFQKKFPHLEQ 96
           TIIEENEKLRE+ANILHQENLALMTE QKKF HL++
Sbjct: 77  TIIEENEKLRERANILHQENLALMTELQKKFQHLDR 112

[Close]

BLAST of CcUC01G003640 vs. ExPASy TrEMBL
Match: A0A6J1E319 (protein LITTLE ZIPPER 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026023 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.6e-30
Identity = 77/95 (81.05%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1   MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
           MCISAT+S  FH I +SKNRR  KRSKLQV RLT RR  EEK+GKDIELKNLQLYLENQT
Sbjct: 17  MCISATESSPFHQIHTSKNRRRLKRSKLQVQRLTRRRCTEEKVGKDIELKNLQLYLENQT 76

Query: 61  IIEENEKLREKANILHQENLALMTEFQKKFPHLEQ 96
           IIEENEKLRE+ANILHQENLALMTE QKKF HL++
Sbjct: 77  IIEENEKLRERANILHQENLALMTELQKKFQHLDR 111

[Close]

BLAST of CcUC01G003640 vs. ExPASy TrEMBL
Match: A0A6P9E725 (protein LITTLE ZIPPER 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109010615 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 60/93 (64.52%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
          MC +  + +   T++SS+ ++ SKRSK+QV  LT R+ CEEK+ KD+ELKNL+LYLEN++
Sbjct: 1  MCTNNAEKIPPGTVRSSERKQRSKRSKVQVQWLTCRKNCEEKVDKDVELKNLKLYLENKS 60

Query: 61 IIEENEKLREKANILHQENLALMTEFQKKFPHL 94
          IIEENEKLR KAN+LHQENLALM+EFQKKFP L
Sbjct: 61 IIEENEKLRRKANLLHQENLALMSEFQKKFPDL 93

[Close]

BLAST of CcUC01G003640 vs. TAIR 10
Match: AT3G60890.2 (protein binding )

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-09
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 21 RSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILHQENL 80
          +S  ++ L++L LTSRRR   K  K++E++NL+L++ENQ+II ENE L++KA +LH EN 
Sbjct: 28 KSKTQTHLRILNLTSRRRRLLKEQKEMEMRNLKLFVENQSIIRENEALKKKALLLHHENN 87

Query: 81 ALMTEFQKKF 91
          AL      K+
Sbjct: 88 ALFALLHPKY 97

[Close]

BLAST of CcUC01G003640 vs. TAIR 10
Match: AT3G60890.1 (protein binding )

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-08
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 21 RSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILHQENL 80
          +S  ++ L++L LT RRR   K  K++E++NL+L++ENQ+II ENE L++KA +LH EN 
Sbjct: 28 KSKTQTHLRILNLTRRRRL-LKEQKEMEMRNLKLFVENQSIIRENEALKKKALLLHHENN 87

Query: 81 ALMTEFQKKF 91
          AL      K+
Sbjct: 88 ALFALLHPKY 96

[Close]

BLAST of CcUC01G003640 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 50.8 bits (120), Expect = 7.0e-07
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1   MCISATQSVLFHTIQSSKNRRSSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60
           MC+S++++  F    +        +S +++ RL+ RRR   +  K +E+ NL+LY+ENQ 
Sbjct: 44  MCLSSSET--FSDTPTRLVLYLKTQSHVRIPRLSRRRRMWRE-EKKMEMINLKLYVENQN 103

Query: 61  IIEENEKLREKANILHQENLALMTEFQKK 90
           II ENEKL++KA +LHQEN  L +  Q K
Sbjct: 104 IIRENEKLKKKALLLHQENKTLFSLLQTK 129

The following BLAST results are available for this feature:

BLAST of CcUC01G003640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647881.1	1.6e-40	95.88	hypothetical protein Csa_000025 [Cucumis sativus]	[more]
XP_022922429.1	2.3e-36	89.69	protein LITTLE ZIPPER 1-like [Cucurbita moschata]	[more]
KAG6579456.1	2.0e-35	87.63	Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]
KAG7036101.1	2.7e-32	83.67	Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023534553.1	2.7e-32	82.47	protein LITTLE ZIPPER 2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC01G003640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZX5	8.9e-07	45.71	Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1	[more]
F4IG60	9.9e-06	40.45	Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1	[more]

BLAST of CcUC01G003640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKF8	5.4e-39	94.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157390 PE=4 SV=1	[more]
A0A6J1E3C5	1.1e-36	89.69	protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430426 PE=4 ...	[more]
A0A6J1DZF5	2.4e-31	83.33	protein LITTLE ZIPPER 2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1E319	4.6e-30	81.05	protein LITTLE ZIPPER 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6P9E725	2.1e-22	64.52	protein LITTLE ZIPPER 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC10901061...	[more]

BLAST of CcUC01G003640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60890.2	2.6e-09	47.14	protein binding	[more]
AT3G60890.1	6.3e-08	45.71	protein binding	[more]
AT2G45450.1	7.0e-07	40.45	protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..85
None	No IPR available	PANTHER	PTHR33601:SF21	OS09G0520500 PROTEIN	coord: 1..94
IPR039312	Protein LITTLE ZIPPER	PANTHER	PTHR33601	PROTEIN LITTLE ZIPPER 4	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G003640.1	CcUC01G003640.1	mRNA