Carg28286 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28286
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP synthase subunit c, chloroplastic
Location	Carg_Chr13: 2888002 .. 2888510 (+)
RNA-Seq Expression	Carg28286
Synteny	Carg28286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTCCTTCCGTTTCTTTCGTCTGTAATGTCATAATTTTGGAATATTGAAATAATTATAATGATTATAGAAAGAGTAGATGATCGTAAAATACTAGAAAAAGAATGAAGAATTGAAGTCAAAGCCTTTAGAAAAAATAAAAAATGTCAGAAAATGGCAGAACATAATAAGTAGCGTATTAATGTCAAGAAAATAAGAAGACACAAAAACAAAAGTTACGTGGGTGGATAGGAACTAAAAAAGAGAGATTGAACTAGTTCGGACGATTCAATATCCATAAGATTCTGACTTACTTCTTTTTATCAGGATAAATCTTAGCGATGGAATAATCAGTGATATGAGAATGAATTGGTTGATTGTCTGTCTCATTAATCATTTCTTTCTTTTGGTGTTAGGAACTTATTATTCATCCACTGATTTCTCCCGCTTCCCTTATTGCTGCTGGATTGGGCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCTAA

mRNA sequence

ATGGGAGTCCTTCCGTTTCTTTCGTCTGAACTTATTATTCATCCACTGATTTCTCCCGCTTCCCTTATTGCTGCTGGATTGGGCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCTAA

Coding sequence (CDS)

ATGGGAGTCCTTCCGTTTCTTTCGTCTGAACTTATTATTCATCCACTGATTTCTCCCGCTTCCCTTATTGCTGCTGGATTGGGCGGCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCTAA

Protein sequence

MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG

Homology

[Close]

BLAST of Carg28286 vs. NCBI nr
Match: KAG7019310.1 (ATP synthase subunit c, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1  MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
          MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG
Sbjct: 1  MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 45

[Close]

BLAST of Carg28286 vs. NCBI nr
Match: CAD5336135.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 56.6 bits (135), Expect = 6.4e-05
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 3   VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
           VL F+  ELI++PL+S AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 249 VLEFIRDELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAG 291

[Close]

BLAST of Carg28286 vs. NCBI nr
Match: KAG5512805.1 (hypothetical protein RHGRI_038766 [Rhododendron griersonianum] >KAG5512813.1 hypothetical protein RHGRI_038774 [Rhododendron griersonianum])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 3   VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
           VL F+  EL+++PLIS AS+IAAGL  GLASIGPG+GQGTAAG
Sbjct: 197 VLEFIRDELLMNPLISAASVIAAGLAVGLASIGPGIGQGTAAG 239

[Close]

BLAST of Carg28286 vs. NCBI nr
Match: KAG5513134.1 (hypothetical protein RHGRI_038254 [Rhododendron griersonianum])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 3   VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
           VL F+  EL+++PLIS AS+IAAGL  GLASIGPG+GQGTAAG
Sbjct: 472 VLEFIRDELLMNPLISAASVIAAGLAVGLASIGPGIGQGTAAG 514

[Close]

BLAST of Carg28286 vs. NCBI nr
Match: KAF7117216.1 (hypothetical protein RHSIM_RhsimPtG0004600 [Rhododendron simsii])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 3   VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
           VL F+  EL+++PLIS AS+IAAGL  GLASIGPG+GQGTAAG
Sbjct: 472 VLEFIRDELLMNPLISAASVIAAGLAVGLASIGPGIGQGTAAG 514

[Close]

BLAST of Carg28286 vs. ExPASy Swiss-Prot
Match: Q4FGF2 (ATP synthase subunit c, chloroplastic OS=Acorus americanus OX=263995 GN=atpH PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.1e-05
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 13 IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
          ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]

BLAST of Carg28286 vs. ExPASy Swiss-Prot
Match: Q3V547 (ATP synthase subunit c, chloroplastic OS=Acorus calamus OX=4465 GN=atpH PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.1e-05
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 13 IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
          ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]

BLAST of Carg28286 vs. ExPASy Swiss-Prot
Match: Q85FN2 (ATP synthase subunit c, chloroplastic OS=Adiantum capillus-veneris OX=13818 GN=atpH PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 5.1e-05
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 13 IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
          ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]

BLAST of Carg28286 vs. ExPASy Swiss-Prot
Match: A4QJA2 (ATP synthase subunit c, chloroplastic OS=Aethionema cordifolium OX=434059 GN=atpH PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.1e-05
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 13 IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
          ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]

BLAST of Carg28286 vs. ExPASy Swiss-Prot
Match: A4QJI6 (ATP synthase subunit c, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=atpH PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.1e-05
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 13 IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
          ++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 33

[Close]

BLAST of Carg28286 vs. ExPASy TrEMBL
Match: A0A7G2FND8 (30S ribosomal protein S2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps2 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-05
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 3   VLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
           VL F+  ELI++PL+S AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 249 VLEFIRDELIMNPLVSAASVIAAGLAVGLASIGPGVGQGTAAG 291

[Close]

BLAST of Carg28286 vs. ExPASy TrEMBL
Match: A0A1W5PPK4 (ATP synthase subunit c, chloroplastic OS=Angelica gigas OX=85712 GN=atpH PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-05
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 6  FLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
          FL  ELI++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 22 FLYEELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 61

[Close]

BLAST of Carg28286 vs. ExPASy TrEMBL
Match: A0A5C7GPA8 (Multifunctional fusion protein OS=Acer yangbiense OX=1000413 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-05
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1    MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
            + ++P +  ELI++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 1548 VSLVPLVCEELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 1592

[Close]

BLAST of Carg28286 vs. ExPASy TrEMBL
Match: A0A5C7IE38 (DNA-directed RNA polymerase subunit OS=Acer yangbiense OX=1000413 GN=EZV62_008593 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-05
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1    MGVLPFLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
            + ++P +  ELI++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 1499 VSLVPLVCEELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 1543

[Close]

BLAST of Carg28286 vs. ExPASy TrEMBL
Match: A0A2G3DGZ7 (ATP synthase subunit b, chloroplastic OS=Capsicum chinense OX=80379 GN=BC332_02352 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 6   FLSSELIIHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
           F+  ELI++PLIS AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 135 FILDELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAG 174

[Close]

BLAST of Carg28286 vs. TAIR 10
Match: ATCG00140.1 (ATP synthase subunit C family protein )

HSP 1 Score: 47.0 bits (110), Expect = 4.7e-06
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 13 IHPLISPASLIAAGLGGGLASIGPGVGQGTAAG 46
          ++PL+S AS+IAAGL  GLASIGPGVGQGTAAG
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAG 33

The following BLAST results are available for this feature:

BLAST of Carg28286 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019310.1	1.1e-12	100.00	ATP synthase subunit c, chloroplastic, partial [Cucurbita argyrosperma subsp. ar...	[more]
CAD5336135.1	6.4e-05	74.42	unnamed protein product [Arabidopsis thaliana]	[more]
KAG5512805.1	1.1e-04	72.09	hypothetical protein RHGRI_038766 [Rhododendron griersonianum] >KAG5512813.1 hyp...	[more]
KAG5513134.1	1.1e-04	72.09	hypothetical protein RHGRI_038254 [Rhododendron griersonianum]	[more]
KAF7117216.1	1.1e-04	72.09	hypothetical protein RHSIM_RhsimPtG0004600 [Rhododendron simsii]	[more]

BLAST of Carg28286 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4FGF2	5.1e-05	81.82	ATP synthase subunit c, chloroplastic OS=Acorus americanus OX=263995 GN=atpH PE=...	[more]
Q3V547	5.1e-05	81.82	ATP synthase subunit c, chloroplastic OS=Acorus calamus OX=4465 GN=atpH PE=3 SV=...	[more]
Q85FN2	5.1e-05	81.82	ATP synthase subunit c, chloroplastic OS=Adiantum capillus-veneris OX=13818 GN=a...	[more]
A4QJA2	5.1e-05	81.82	ATP synthase subunit c, chloroplastic OS=Aethionema cordifolium OX=434059 GN=atp...	[more]
A4QJI6	5.1e-05	81.82	ATP synthase subunit c, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=atp...	[more]

BLAST of Carg28286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7G2FND8	3.1e-05	74.42	30S ribosomal protein S2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps2 ...	[more]
A0A1W5PPK4	6.9e-05	80.00	ATP synthase subunit c, chloroplastic OS=Angelica gigas OX=85712 GN=atpH PE=3 SV...	[more]
A0A5C7GPA8	6.9e-05	68.89	Multifunctional fusion protein OS=Acer yangbiense OX=1000413 GN=rpoC2 PE=3 SV=1	[more]
A0A5C7IE38	6.9e-05	68.89	DNA-directed RNA polymerase subunit OS=Acer yangbiense OX=1000413 GN=EZV62_00859...	[more]
A0A2G3DGZ7	1.2e-04	77.50	ATP synthase subunit b, chloroplastic OS=Capsicum chinense OX=80379 GN=BC332_023...	[more]

BLAST of Carg28286 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00140.1	4.7e-06	78.79	ATP synthase subunit C family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038662	F1F0 ATP synthase subunit C superfamily	GENE3D	1.20.20.10	F1F0 ATP synthase subunit C	coord: 9..45 e-value: 2.5E-6 score: 29.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28286-RA	Carg28286-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0050821	protein stabilization
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0042301	phosphate ion binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008270	zinc ion binding