Carg28254 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28254
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein S12
Location	Carg_Chr08: 3674322 .. 3674751 (-)
RNA-Seq Expression	Carg28254
Synteny	Carg28254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACATTAAGTCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCTTACGGACAGTACTCGAGCTTCAAATCAATGTCCCAAGAAGTAAGGAGTATGCCTGTGTCTTTCAATGTGAACACTGAAAAAGACCTAATTCAACTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTACTCACATTCTGGGAGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAACAAGAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATCCCATTTTATTCTAGGAGTCATGGATTTACTAGGAATTTCGGATCGAAGAAGAGGCAGATCTAAAATATGGTATTCTTTAACTTGCATACCGATCCATTGCAAGAAAAACCTAATCGATAATGAATTGCAAGATGCCTTTCTTCCA

mRNA sequence

ATGCTTACATTAAGTCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCTTACGGACAGTACTCGAGCTTCAAATCAATGTCCCAAGAAACCTAATTCAACTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTACTCACATTCTGGGAGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAACAAGAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATCCCATTTTATTCTAGGAGTCATGGATTTACTAGGAATTTCGGATCGAAGAAGAGGCAGATCTAAAATATGGTATTCTTTAACTTGCATACCGATCCATTGCAAGAAAAACCTAATCGATAATGAATTGCAAGATGCCTTTCTTCCA

Coding sequence (CDS)

ATGCTTACATTAAGTCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCTTACGGACAGTACTCGAGCTTCAAATCAATGTCCCAAGAAACCTAATTCAACTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTACTCACATTCTGGGAGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAACAAGAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATCCCATTTTATTCTAGGAGTCATGGATTTACTAGGAATTTCGGATCGAAGAAGAGGCAGATCTAAAATATGGTATTCTTTAACTTGCATACCGATCCATTGCAAGAAAAACCTAATCGATAATGAATTGCAAGATGCCTTTCTTCCA

Protein sequence

MLTLSQLIRHGREEKRLTDSTRASNQCPKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSKIWYSLTCIPIHCKKNLIDNELQDAFLP

Homology

[Close]

BLAST of Carg28254 vs. NCBI nr
Match: KAG7025766.1 (Ribosomal protein S12, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267.7 bits (683), Expect = 5.2e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQCPKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNL 60
           MLTLSQLIRHGREEKRLTDSTRASNQCPKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNL
Sbjct: 1   MLTLSQLIRHGREEKRLTDSTRASNQCPKKPNSTPRKIAKVRLSNRHDIFTHILGEGHNL 60

Query: 61  QEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSKIWYSLTCIPIHCKKNLID 120
           QEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSKIWYSLTCIPIHCKKNLID
Sbjct: 61  QEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSKIWYSLTCIPIHCKKNLID 120

Query: 121 NELQDAFLP 130
           NELQDAFLP
Sbjct: 121 NELQDAFLP 129

[Close]

BLAST of Carg28254 vs. NCBI nr
Match: RYR38273.1 (hypothetical protein Ahy_A09g043262 isoform B [Arachis hypogaea])

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-38
Identity = 89/116 (76.72%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDCTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HILGEGHN QEHSMVL RGGRVKDLPGVKSH I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFAHILGEGHNSQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. NCBI nr
Match: YP_009941470.1 (ribosomal protein S12 [Fagus sylvatica] >KAG6621677.1 hypothetical protein I3842_Q009300 [Carya illinoinensis] >QIS40626.1 ribosomal protein S12 [Quercus variabilis] >QOC70528.1 ribosomal protein S12 [Fagus sylvatica] >QVG61362.1 ribosomal protein S12 [Fagus sylvatica] >QVG61418.1 ribosomal protein S12 [Fagus sylvatica])

HSP 1 Score: 168.7 bits (426), Expect = 3.3e-38
Identity = 89/116 (76.72%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. NCBI nr
Match: QWX88123.1 (ribosomal protein S12 [Indigofera tinctoria])

HSP 1 Score: 168.7 bits (426), Expect = 3.3e-38
Identity = 89/116 (76.72%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. NCBI nr
Match: AQK77835.1 (ribosomal protein S12 [Lophophytum mirabile subsp. bolivianum])

HSP 1 Score: 168.3 bits (425), Expect = 4.3e-38
Identity = 91/133 (68.42%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M T +QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSKIWYS 120
           HDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I GV DLLGI DRRRGRSK    
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGILDRRRGRSKYGVE 120

[Close]

BLAST of Carg28254 vs. ExPASy Swiss-Prot
Match: P27070 (Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-39
Identity = 86/116 (74.14%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRL+NR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLANR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHN QEHSMVL RGGRVKD PGVKSH I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFPHIPGEGHNSQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. ExPASy Swiss-Prot
Match: P68535 (Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-39
Identity = 86/116 (74.14%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M +L+QLIRHGREEKR TD TRA +QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHNLQEHSMVL RGGRVKD PGVKSH I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. ExPASy Swiss-Prot
Match: P68536 (Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-39
Identity = 86/116 (74.14%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M +L+QLIRHGREEKR TD TRA +QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHNLQEHSMVL RGGRVKD PGVKSH I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. ExPASy Swiss-Prot
Match: P60096 (Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-38
Identity = 85/116 (73.28%), Postives = 88/116 (75.86%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHN QEH MVL RGGRVKD PGVKSH I GV DLLGI +RRRGRSK
Sbjct: 61  HDIFAHIPGEGHNSQEHPMVLIRGGRVKDSPGVKSHRIRGVKDLLGIPNRRRGRSK 116

[Close]

BLAST of Carg28254 vs. ExPASy Swiss-Prot
Match: P60097 (Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana OX=3407 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-38
Identity = 85/116 (73.28%), Postives = 88/116 (75.86%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHN QEH MVL RGGRVKD PGVKSH I GV DLLGI +RRRGRSK
Sbjct: 61  HDIFAHIPGEGHNSQEHPMVLIRGGRVKDSPGVKSHRIRGVKDLLGIPNRRRGRSK 116

[Close]

BLAST of Carg28254 vs. ExPASy TrEMBL
Match: A0A445BHX1 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g043262 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 89/116 (76.72%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDCTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HILGEGHN QEHSMVL RGGRVKDLPGVKSH I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFAHILGEGHNSQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. ExPASy TrEMBL
Match: A0A6H0AJV7 (Ribosomal protein S12 OS=Quercus variabilis OX=103481 GN=rps12 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-38
Identity = 89/116 (76.72%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. ExPASy TrEMBL
Match: A0A7L7T789 (Ribosomal protein S12 OS=Fagus sylvatica OX=28930 GN=rps12 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-38
Identity = 89/116 (76.72%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. ExPASy TrEMBL
Match: Q7YEU1 (Ribosomal protein S12 OS=Pisum abyssinicum OX=198035 GN=rps12 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.1e-38
Identity = 88/116 (75.86%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M TL+QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHN QEHSMVL RGGRVKDLPGVKSH+I GV DLLGI DRRRGRSK
Sbjct: 61  HDIFAHIPGEGHNSQEHSMVLIRGGRVKDLPGVKSHYIRGVKDLLGIPDRRRGRSK 116

[Close]

BLAST of Carg28254 vs. ExPASy TrEMBL
Match: A0A1Q1AM96 (Ribosomal protein S12 OS=Lophophytum mirabile subsp. bolivianum OX=1813629 GN=rps12 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.1e-38
Identity = 91/133 (68.42%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M T +QLIRHGREEKR TD TRAS+QC              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSKIWYS 120
           HDIF HI GEGHNLQEHSMVL RGGRVKDLPGVKSH I GV DLLGI DRRRGRSK    
Sbjct: 61  HDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKSHCIRGVKDLLGILDRRRGRSKYGVE 120

[Close]

BLAST of Carg28254 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-37
Identity = 81/116 (69.83%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M T +QLIRHGREEKR TD TRA ++C              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHN QEHS VL RGGRVKD PGVKSH I GV DL+GI  RRRGRSK
Sbjct: 61  HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSK 116

[Close]

BLAST of Carg28254 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-37
Identity = 81/116 (69.83%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M T +QLIRHGREEKR TD TRA ++C              PKKPNS PRKIAKVRLSNR
Sbjct: 1   MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
           HDIF HI GEGHN QEHS VL RGGRVKD PGVKSH I GV DL+GI  RRRGRSK
Sbjct: 61  HDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSK 116

[Close]

BLAST of Carg28254 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-23
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M T+ QLIR+ R+  R    + A   C              PKKPNS  RK+A+VRL++ 
Sbjct: 1   MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
            +I  +I G GHNLQEHS+VL RGGRVKDLPGV+ H + G +D +G+ DR++GRSK
Sbjct: 61  FEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSK 116

[Close]

BLAST of Carg28254 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-23
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M T+ QLIR+ R+  R    + A   C              PKKPNS  RK+A+VRL++ 
Sbjct: 1   MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
            +I  +I G GHNLQEHS+VL RGGRVKDLPGV+ H + G +D +G+ DR++GRSK
Sbjct: 61  FEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSK 116

[Close]

BLAST of Carg28254 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-23
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 1   MLTLSQLIRHGREEKRLTDSTRASNQC--------------PKKPNSTPRKIAKVRLSNR 60
           M T+ QLIR+ R+  R    + A   C              PKKPNS  RK+A+VRL++ 
Sbjct: 1   MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 61  HDIFTHILGEGHNLQEHSMVLTRGGRVKDLPGVKSHFILGVMDLLGISDRRRGRSK 103
            +I  +I G GHNLQEHS+VL RGGRVKDLPGV+ H + G +D +G+ DR++GRSK
Sbjct: 61  FEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSK 116

The following BLAST results are available for this feature:

BLAST of Carg28254 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025766.1	5.2e-68	100.00	Ribosomal protein S12, mitochondrial, partial [Cucurbita argyrosperma subsp. arg...	[more]
RYR38273.1	2.5e-38	76.72	hypothetical protein Ahy_A09g043262 isoform B [Arachis hypogaea]	[more]
YP_009941470.1	3.3e-38	76.72	ribosomal protein S12 [Fagus sylvatica] >KAG6621677.1 hypothetical protein I3842...	[more]
QWX88123.1	3.3e-38	76.72	ribosomal protein S12 [Indigofera tinctoria]	[more]
AQK77835.1	4.3e-38	68.42	ribosomal protein S12 [Lophophytum mirabile subsp. bolivianum]	[more]

BLAST of Carg28254 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27070	3.1e-39	74.14	Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1	[more]
P68535	3.1e-39	74.14	Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV...	[more]
P68536	3.1e-39	74.14	Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 S...	[more]
P60096	2.0e-38	73.28	Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE...	[more]
P60097	2.0e-38	73.28	Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana OX=3407 GN=RPS12 PE...	[more]

BLAST of Carg28254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445BHX1	1.2e-38	76.72	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g043262 PE=3 SV=1	[more]
A0A6H0AJV7	1.6e-38	76.72	Ribosomal protein S12 OS=Quercus variabilis OX=103481 GN=rps12 PE=3 SV=1	[more]
A0A7L7T789	1.6e-38	76.72	Ribosomal protein S12 OS=Fagus sylvatica OX=28930 GN=rps12 PE=3 SV=1	[more]
Q7YEU1	2.1e-38	75.86	Ribosomal protein S12 OS=Pisum abyssinicum OX=198035 GN=rps12 PE=3 SV=1	[more]
A0A1Q1AM96	2.1e-38	68.42	Ribosomal protein S12 OS=Lophophytum mirabile subsp. bolivianum OX=1813629 GN=rp...	[more]

BLAST of Carg28254 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07675.1	1.7e-37	69.83	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	1.7e-37	69.83	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	3.2e-23	48.28	ribosomal protein S12A	[more]
ATCG01230.1	3.2e-23	48.28	ribosomal protein S12B	[more]
ATCG00905.1	3.2e-23	48.28	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 63..80 score: 82.64 coord: 44..63 score: 57.85 coord: 96..108 score: 37.71 coord: 80..96 score: 43.38 coord: 28..43 score: 77.78
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 24..98 e-value: 2.0E-18 score: 66.1
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 20..102
None	No IPR available	GENE3D	2.40.50.140		coord: 20..108 e-value: 1.0E-30 score: 108.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..37
None	No IPR available	PANTHER	PTHR11652:SF54	RIBOSOMAL PROTEIN S12/S23-RELATED	coord: 20..102
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 6..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28254-RA	Carg28254-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome