Carg28242 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28242
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Location	Carg_Chr13: 5038399 .. 5039977 (+)
RNA-Seq Expression	Carg28242
Synteny	Carg28242

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAGAGCACATGGATGGAACCATCTCTTCTTCAAGAACAAGGTAGACTAACTTGCTTATTATTTCTAGCAGTTAATGAAACCAATGCACAAAAATGCATGTTGGGTGAATTGAAATCATTTTGATAATAAGAAGGAAGAAGTTTGATCTCTTTTACCGAGAGGGTCGTAGGTTCGAGTCCGTACAGCCCTTTTGAATAATGAAAAAAAAGAATGAATAGTTTGCCTTTCCTCATTATTCTTTGTATTTGTATTCTTTGTAACTGTCCACTTGATTTGGTTCATCACATTAATGTCTCATCCTTGTAGATAAATGAGATATGCTAGCCTATTCTATTTTCCCATACAAAATCAAGATGTAATACTTCCTTCTAGTCAATTTGTGGTTGAAACATCATGACATGAAACCAGAGCCGGTGAAAACCTCCACCCTAACTAACCCCCCAATGCAAATCGAATGCCCTAGTAAATCACATGGATCTACGAACGACTGATTTGTGGCCAAGCTCTAGAGTTTGAGAATTTGGGCACTTTCATTGTAAACATTGTCAACATAGGCTTTTCTCTTGGTATACCTCACCCTTATTTAGTACAGCACAAAACTAAAGTAGTCGTCTTCTCTTTCCTTATTCAATCACTAAAAGTTCCTAACTAAATAGAAGTTCCTACTAGAGAATACTGATGCGATTAGATATGTATTCTCTATGTCTGGATATAATGGATATTATAGAAATAGGATTCTAGTGGATGAATCTTAAAACGAGCCATGTACCGAATCACCTCCTTTCGTTTGTTTGCTTCGGTAAAACAAGCATGAATTTCAATTCGAATCGACTAATCCGGTATATTTTCCCCATTGCTAGGAGTCCGTTTATGTTTCTTCTGCTTTCCGAATATGAGATTTGCTGGGTATTGATAATAATAGAGTCTTATTCCGAGGCATTTCTTCTTTCTCTAGTTTTAGCCCCTCTTAGCAAAGTTTCGAGAAAGTTTCGAGTTATGAATCAATCGGTAATAGATAGAACCAATGGGCGATGCTTGGGTACAATTTCTAATCTGTTATTATTGCTCTAGTTTTTCTTGTTTTTGATGTTGAAACGGTTTGTTTTTCTTTATCCAGGCCAGGGGCAATGAGTTTTGATGCATTAGGGGTATTCGTCTTTATAGAAGCTCTCATTTTGTGCTTATCCTATCCTAATTCTCGGTTTAGTTTATGCATGTCGAAAAGGAGCATTGGAATTGAGACTGTTATTCATTCCTCTTTCCCTTACTTGATCGAAGAACCCAAACTTCAGTAACTACATCAAATGATCTTGCAAATTGGTCAAGACTCCCCACCCCTCTTTATGGCCGCTTCTCTATGGTACTTCTTTCTTCTTGCTTCATTGAATTCGCTTCTAGGTGATGGATTCGACTTTGATCCTTATGGACTGGTACCAAGATCTAGTCCTAGCCGGGCAGACTTCATTTTCCCAGCGGGTGCGGTAACAATGAAAATGGCTCCTTCTTTCTTTAGTCAGACAGATTCTATGAGCAAATGCCTGAACCAATATATGTTCTTCCTATGGGAGCATAA

mRNA sequence

ATGAATCAGAGCACATGGATGGAACCATCTCTTCTTCAAGAACAAGGTGATGGATTCGACTTTGATCCTTATGGACTGGTACCAAGATCTAGTCCTAGCCGGGCAGACTTCATTTTCCCAGCGGGTGCGTCAGACAGATTCTATGAGCAAATGCCTGAACCAATATATGTTCTTCCTATGGGAGCATAA

Coding sequence (CDS)

ATGAATCAGAGCACATGGATGGAACCATCTCTTCTTCAAGAACAAGGTGATGGATTCGACTTTGATCCTTATGGACTGGTACCAAGATCTAGTCCTAGCCGGGCAGACTTCATTTTCCCAGCGGGTGCGTCAGACAGATTCTATGAGCAAATGCCTGAACCAATATATGTTCTTCCTATGGGAGCATAA

Protein sequence

MNQSTWMEPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASDRFYEQMPEPIYVLPMGA

Homology

[Close]

BLAST of Carg28242 vs. NCBI nr
Match: KAG7019370.1 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MNQSTWMEPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASDRFYEQMPEPIYVLPM 60
          MNQSTWMEPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASDRFYEQMPEPIYVLPM
Sbjct: 1  MNQSTWMEPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASDRFYEQMPEPIYVLPM 60

Query: 61 GA 63
          GA
Sbjct: 61 GA 62

[Close]

BLAST of Carg28242 vs. NCBI nr
Match: THF96087.1 (hypothetical protein TEA_004225 [Camellia sinensis var. sinensis])

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-07
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 8   EPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLP 63
           E +L + +G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ 
Sbjct: 430 EANLKKAEGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIA 489

[Close]

BLAST of Carg28242 vs. NCBI nr
Match: THG20144.1 (hypothetical protein TEA_002380 [Camellia sinensis var. sinensis])

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-07
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 8   EPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLP 63
           E +L + +G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ 
Sbjct: 508 EANLKKAEGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIA 567

[Close]

BLAST of Carg28242 vs. NCBI nr
Match: THU42649.1 (hypothetical protein C4D60_Mb00t11440 [Musa balbisiana])

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-07
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 8   EPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLP 63
           E +L + +G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ 
Sbjct: 44  EANLSRAEGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIA 103

[Close]

BLAST of Carg28242 vs. NCBI nr
Match: PWZ03988.1 (ATP synthase subunit beta, chloroplastic [Zea mays])

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-07
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 8   EPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASDRFYEQMPEPIYVLPMGA 63
           E +L + +G  FDFD YGLVPRSSP +AD I  A    R YEQMPEP YV+ MGA
Sbjct: 520 EANLSKAEGSRFDFDRYGLVPRSSPRQADLILTA---VRLYEQMPEPKYVIAMGA 571

[Close]

BLAST of Carg28242 vs. ExPASy Swiss-Prot
Match: A9LYA5 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus americanus OX=263995 GN=ndhK PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-09
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 16  GDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLPMGA 63
           G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ MGA
Sbjct: 53  GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGA 107

[Close]

BLAST of Carg28242 vs. ExPASy Swiss-Prot
Match: Q3V530 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus calamus OX=4465 GN=ndhK PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-09
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 16  GDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLPMGA 63
           G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ MGA
Sbjct: 53  GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGA 107

[Close]

BLAST of Carg28242 vs. ExPASy Swiss-Prot
Match: A4QJB9 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema cordifolium OX=434059 GN=ndhK PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-09
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 16  GDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLPMGA 63
           G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ MGA
Sbjct: 53  GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGA 107

[Close]

BLAST of Carg28242 vs. ExPASy Swiss-Prot
Match: A4QJK3 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=ndhK PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-09
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 16  GDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLPMGA 63
           G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ MGA
Sbjct: 53  GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGA 107

[Close]

BLAST of Carg28242 vs. ExPASy Swiss-Prot
Match: A1EA12 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Agrostis stolonifera OX=63632 GN=ndhK PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-09
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 16  GDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLPMGA 63
           G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ MGA
Sbjct: 53  GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGA 107

[Close]

BLAST of Carg28242 vs. ExPASy TrEMBL
Match: A0A4S4D1Z6 (ATP synthase subunit beta OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_004225 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 8   EPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLP 63
           E +L + +G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ 
Sbjct: 430 EANLKKAEGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIA 489

[Close]

BLAST of Carg28242 vs. ExPASy TrEMBL
Match: A0A4S4EUI9 (ATP synthase subunit beta OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_002380 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 8   EPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLP 63
           E +L + +G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ 
Sbjct: 508 EANLKKAEGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIA 567

[Close]

BLAST of Carg28242 vs. ExPASy TrEMBL
Match: A0A4S8I568 (Oxidored_q6 domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t11440 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 8   EPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLP 63
           E +L + +G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ 
Sbjct: 44  EANLSRAEGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIA 103

[Close]

BLAST of Carg28242 vs. ExPASy TrEMBL
Match: A0A3L6D6J4 (H(+)-transporting two-sector ATPase OS=Zea mays OX=4577 GN=atpB_1 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 8   EPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASDRFYEQMPEPIYVLPMGA 63
           E +L + +G  FDFD YGLVPRSSP +AD I  A    R YEQMPEP YV+ MGA
Sbjct: 520 EANLSKAEGSRFDFDRYGLVPRSSPRQADLILTA---VRLYEQMPEPKYVIAMGA 571

[Close]

BLAST of Carg28242 vs. ExPASy TrEMBL
Match: A0A1X7YHE3 (H(+)-transporting two-sector ATPase OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 8   EPSLLQEQGDGFDFDPYGLVPRSSPSRADFIFPAGASDRFYEQMPEPIYVLPMGA 63
           E +L + +G  FDFD YGLVPRSSP +AD I  A    R YEQMPEP YV+ MGA
Sbjct: 442 EANLSKAEGSRFDFDRYGLVPRSSPRQADLILTA---VRLYEQMPEPKYVIAMGA 493

[Close]

BLAST of Carg28242 vs. TAIR 10
Match: ATCG00430.1 (photosystem II reaction center protein G )

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-10
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 16  GDGFDFDPYGLVPRSSPSRADFIFPAGASD--------RFYEQMPEPIYVLPMGA 63
           G  FDFD YGLVPRSSP +AD I  AG           R YEQMPEP YV+ MGA
Sbjct: 53  GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGA 107

The following BLAST results are available for this feature:

BLAST of Carg28242 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019370.1	2.5e-28	100.00	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic, partial [Cucurbita argy...	[more]
THF96087.1	4.2e-07	53.97	hypothetical protein TEA_004225 [Camellia sinensis var. sinensis]	[more]
THG20144.1	4.2e-07	53.97	hypothetical protein TEA_002380 [Camellia sinensis var. sinensis]	[more]
THU42649.1	4.2e-07	53.97	hypothetical protein C4D60_Mb00t11440 [Musa balbisiana]	[more]
PWZ03988.1	5.5e-07	60.00	ATP synthase subunit beta, chloroplastic [Zea mays]	[more]

BLAST of Carg28242 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LYA5	8.0e-09	58.18	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus americanus OX=...	[more]
Q3V530	8.0e-09	58.18	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus calamus OX=446...	[more]
A4QJB9	8.0e-09	58.18	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema cordifoliu...	[more]
A4QJK3	8.0e-09	58.18	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema grandiflor...	[more]
A1EA12	8.0e-09	58.18	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Agrostis stolonifera ...	[more]

BLAST of Carg28242 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4S4D1Z6	2.0e-07	53.97	ATP synthase subunit beta OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_00...	[more]
A0A4S4EUI9	2.0e-07	53.97	ATP synthase subunit beta OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_00...	[more]
A0A4S8I568	2.0e-07	53.97	Oxidored_q6 domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t...	[more]
A0A3L6D6J4	2.7e-07	60.00	H(+)-transporting two-sector ATPase OS=Zea mays OX=4577 GN=atpB_1 PE=3 SV=1	[more]
A0A1X7YHE3	2.7e-07	60.00	H(+)-transporting two-sector ATPase OS=Zea mays OX=4577 PE=3 SV=1	[more]

BLAST of Carg28242 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00430.1	5.7e-10	58.18	photosystem II reaction center protein G	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	56770	HydA/Nqo6-like	coord: 17..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28242-RA	Carg28242-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006811	ion transport
cellular_component	GO:0005622	intracellular anatomical structure
cellular_component	GO:0016020	membrane
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0043167	ion binding
molecular_function	GO:0022857	transmembrane transporter activity