Carg28235 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28235
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 2148551 .. 2150437 (+)
RNA-Seq ExpressionCarg28235
SyntenyCarg28235
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCAAAACATCTGGATATGTTCTCCTTTGAAGGTACTCTCATTCCCTGAATAATTTCCAAATTTTGAAATGCTTTTAGACTTGATTATCTTGTAGAAATTTCGATTTCATTTAAAAGATTTTCCATATGGGTATGAATGAATGCCTAGGTTTTTGGGTTTAGTCAATGCTGCTCGACATCTTTCCTGCACTCTCCTGTTTTGTTCAATTTAGTTCTTTTGAGTGAGCTATGTTTGAATCCTGGCTAGGCTGGTGCGGACGATGTTCATGCGGACAGGCTCAATCCTTCGTGTACGCAAATGGCAAACGACAATGCTCCAACAACTATTGAATTGAAAAGAACCTTTGTTAAAGACTTGTTCTTCAAATCAAACTACTGCCAAGGTAATTAGTTTTGTTCTTTATTCATCCGTTCTTACAAAAACTCAGTAATACACTTTGATTTCAATTAGAGAATAAAAGAAAATAGAGCGGAAACATATACTTTGAGCTGCCAAATAATCAAAACACCGTTCATTGTTTCTAGAAATCAAGAAAACTCAGTCAATTGATCATTCCATTTGTCCTGATTTCAGGATGTAGCTCTAGCATCTGTTTCGATGAGAACCACATACCCTTTCCACCCGATATTAGAATAAGCTTCGTCTTCAGAAACAAGGTATAGGATCCGTGAGACGGTTTTACATACAGACATGAATGACAATGCCATACCCGTCTTCAATCCAGGAGACCTTGATTGAGGCAGCCCTCCGGAACAGGTCTTCATTTTCCAAAGGTGCAAGATACATTTCTCCTAATTTTCTCAAACCTCAGGCTCTTGCATAGACTATTGGTAGATTGAATCTCAAAGACCAAAAAACCAATAGGAGCCAGTCTCTCTACCCGGCTAGACAGATCAGGATGGTTTGCATTGAAGTTTATTGAAGTGTTGCTTACTGATATCGGCATGTGAATGAAATAAAGTTGGTGGATCTTCATGACAAGAGGGATGAAAATGAAAGGGCCTGATCTTGGCCACCTCATGTTCTATTGGTTTTTTGAATCAAATTTCTATTCTTTATATTGATTGAAAGGGCCAACAGAGGTTAGCTACAAGCATGAGAATCAGCTGCACCCAAAATGATGGACTGGTATAATGACATAAGTTGGAAAAGACAGCCCAAAGTTTGGGTCTTAAATTATTATCTTATTGTATAGTATAGACTGTCAATAATATGGAATCCAATTCGAGCATTTGAAATGATTTTAAGGGACATTTTATCATTGCTTGTAGGCTCGGAACAATCCCTGACATCCCATTATTATACACATTTACTTGAAATTCTCATTCATTTCTATACTAGTGTACTAGACATCCCCTCCCTCAAGAGCCAACCATCTTCGTTGTCGAGGCTACTCAGTTCAACACTATCCTCCTTTAGAACTCTCTTGTAAGTTTGGATATGCATACTCTAGGCCTTCGTACCACACTCGTTCATCGATGGTCCCGCTTGTTTCCCCTCATCTGAATGCAAACTCACCATAACTTGACGGAATTTTCTGAGCACTCTGTTTTTCCAATTTGGTTTTGAAGAATTGTCCCTACCATTTCTGTAAACTTTCTTCATGATGCATTGGTTTACCATTCTGTCATTAAAACTCGAGTATTGGCGACTGTATTGAATAATTGGTGTGCGAGCGCAGAGTACTTCGCAGAGAACCACCCCAAAATGAATATACATCGGACTTTTCTGAGAGTTGTCGTCGTCGGCAATACTACTGGGGTCGAGATAACCGAAGCTACCTTTGACTTACTGTCTAATGTGTGCGTTGGACATGTTGGTTGGCCCGGATTTTGGACAATCCAAAATCAGAAACCTTAGCAACCCATTTGTGTCCAGTAAG

mRNA sequence

ATGGGGCAAAACATCTGGATATGTTCTCCTTTGAAGGCTGGTGCGGACGATGTTCATGCGGACAGGCTCAATCCTTCGTGTACGCAAATGGCAAACGACAATGCTCCAACAACTATTGAATTGAAAAGAACCTTTGTTAAAGACTTGTTCTTCAAATCAAACTACTGCCAAGGATGTAGCTCTAGCATCTGTTTCGATGAGAACCACATACCCTTTCCACCCGATATTAGAATAAGCTTCGTCTTCAGAAACAAGGTATAGGATCCGTGAGACGGTTTTACATACAGACATGAATGACAATGCCATACCCGTCTTCAATCCAGGAGACCTTGATTGAGGCAGCCCTCCGGAACAGGTCTTCATTTTCCAAAGGTGCAAGATACATTTCTCCTAATTTTCTCAAACCTCAGGCTCTTGCATAGACTATTGGTAGATTGAATCTCAAAGACCAAAAAACCAATAGGAGCCAGTCTCTCTACCCGGCTAGACAGATCAGGATGGTTTGCATTGAAGTTTATTGAAGTGTTGCTTACTGATATCGGCATGTGAATGAAATAAAGTTGGTGGATCTTCATGACAAGAGGGATGAAAATGAAAGGGCCTGATCTTGGCCACCTCATGTTCTATTGGTTTTTTGAATCAAATTTCTATTCTTTATATTGATTGAAAGGGCCAACAGAGGTTAGCTACAAGCATGAGAATCAGCTGCACCCAAAATGATGGACTGGTATAATGACATAAGTTGGAAAAGACAGCCCAAAGTTTGGGTCTTAAATTATTATCTTATTGTATAGTATAGACTGTCAATAATATGGAATCCAATTCGAGCATTTGAAATGATTTTAAGGGACATTTTATCATTGCTTGTAGGCTCGGAACAATCCCTGACATCCCATTATTATACACATTTACTTGAAATTCTCATTCATTTCTATACTAGTGTACTAGACATCCCCTCCCTCAAGAGCCAACCATCTTCGTTGTCGAGGCTACTCAGTTCAACACTATCCTCCTTTAGAACTCTCTTGTAAGTTTGGATATGCATACTCTAGGCCTTCGTACCACACTCGTTCATCGATGGTCCCGCTTGTTTCCCCTCATCTGAATGCAAACTCACCATAACTTGACGGAATTTTCTGAGCACTCTGTTTTTCCAATTTGGTTTTGAAGAATTGTCCCTACCATTTCTGTAAACTTTCTTCATGATGCATTGGTTTACCATTCTGTCATTAAAACTCGAGTATTGGCGACTGTATTGAATAATTGGTGTGCGAGCGCAGAGTACTTCGCAGAGAACCACCCCAAAATGAATATACATCGGACTTTTCTGAGAGTTGTCGTCGTCGGCAATACTACTGGGGTCGAGATAACCGAAGCTACCTTTGACTTACTGTCTAATGTGTGCGTTGGACATGTTGGTTGGCCCGGATTTTGGACAATCCAAAATCAGAAACCTTAGCAACCCATTTGTGTCCAGTAAG

Coding sequence (CDS)

ATGGGGCAAAACATCTGGATATGTTCTCCTTTGAAGGCTGGTGCGGACGATGTTCATGCGGACAGGCTCAATCCTTCGTGTACGCAAATGGCAAACGACAATGCTCCAACAACTATTGAATTGAAAAGAACCTTTGTTAAAGACTTGTTCTTCAAATCAAACTACTGCCAAGGATGTAGCTCTAGCATCTGTTTCGATGAGAACCACATACCCTTTCCACCCGATATTAGAATAAGCTTCGTCTTCAGAAACAAGGTATAG

Protein sequence

MGQNIWICSPLKAGADDVHADRLNPSCTQMANDNAPTTIELKRTFVKDLFFKSNYCQGCSSSICFDENHIPFPPDIRISFVFRNKV
Homology
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BLAST of Carg28235 vs. NCBI nr
Match: KAG7036764.1 (hypothetical protein SDJN02_00384, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.9 bits (481), Expect = 9.2e-45
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MGQNIWICSPLKAGADDVHADRLNPSCTQMANDNAPTTIELKRTFVKDLFFKSNYCQGCS 60
          MGQNIWICSPLKAGADDVHADRLNPSCTQMANDNAPTTIELKRTFVKDLFFKSNYCQGCS
Sbjct: 1  MGQNIWICSPLKAGADDVHADRLNPSCTQMANDNAPTTIELKRTFVKDLFFKSNYCQGCS 60

Query: 61 SSICFDENHIPFPPDIRISFVFRNKV 87
          SSICFDENHIPFPPDIRISFVFRNKV
Sbjct: 61 SSICFDENHIPFPPDIRISFVFRNKV 86

The following BLAST results are available for this feature:
BLAST of Carg28235 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036764.19.2e-45100.00hypothetical protein SDJN02_00384, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg28235 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28235 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28235 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28235-RACarg28235-RAmRNA