Carg28202 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28202
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RAB6-interacting golgin
Location	Carg_Chr13: 2913872 .. 2915759 (-)
RNA-Seq Expression	Carg28202
Synteny	Carg28202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATCATCATCATCATCATCATCATCATTTGCGAGAGAGAAGGCATGACGACGCAGAAACAGAGCTGGGAGGCGCAACAATCGCAGATGCAGCAGAGAGTGAAGAAGGCGATTGGGAGTCCGGCGAGGGAGGATCAAGAGGAGGAGCTTTCGCGATCGGCGTTGGCTCTGTTCCGCGCGAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGGGAGAAGGTGGAGAATCGTCTTGGACGAGCAGAAGAAGCGACGAAGCGATTGGCGGAGATCCGCGAAGTAAGTGTGTGGGATTGTATCCAATTCCAATCAATCCATTGATTAGGGTTAGAATTGAAATTGATGAGAAGAAACTGGAATGAAATGAACACAGGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTGATCCGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGAATCACCTGCCAAAAGAAGGTCCTGATTCCAAACTTCATCCATTTTTTTTAAATCAAATTTCTCAAAACATTTTCCCCCTTTCCTCTTTCATATTACTTCATCTTAATCGAGATGAATTCATCCTTCTTTCTTTCTCTTCTCCATAACCGGATTGAAAAGTGTATTCACGTATGGTTAGGTTTTCACACAGTTATATAAAGTGCACAATCCACCCCATCTGGATCCAGCCTACACGCTCCCTTCATTCCCCTCTCTAACAGACAACAGACGTGGGATCTCACAATCCCCAGTTTTAGACTCAGGGTCTAACACTCATTTCCCTCTACAATTGATGTGGGATCTCACAATCCACTCCCTTCAGGCCCAATGTCCTTGTTGGTACACCATCCCCTCTCTTACTCAGATACCATTTGTAACGTCTCAAGCCCACTCCTAACAAATTTGGGCTTTCCCTTTCCGACTTCTCTCAAGATTTTTAAAAGGTATATGTTAGGGAGAGGTTTCCACACCTAAAAAGAATGTTTTGTTCCCCTCTCCATGTGTCTGCTAGGAAGAGGTTCCATATTCTTAAAGAGAATGTTTCGTTCTCCTCTCCAACTAACATAGGATCTCACAATATGTTATAATTCTCGTGACCACACTCTATCAAATCTTAATTTTTAGGCTAAATTAATTAATAAATAAAACTTATAAATGGTATATATTGTCTAAAAAATACGTCCAAATTTTTTTTTTTAATTTGAAGGGTATTTTAATGAATTGTTTTAAAGTTTAACCATATTTTTAAAAAATATTCTTATCGTTAGTATTATGTTTAAAAAAAAATAGCTATGAACTTTTAAAAATTACAAAGAGTTTTAATTTTGTTTTATCGTCAATATTTGAACGTGTGTATATATATATATATATATATATATATATATATATATATATGAAGTAATTGTTAAATTAATAAAGTATTTTGATTTATTTGGTCCATACGATACCAGGAGAGAGAATACAAGGAAGTACTAGAGTTATTGAACGAGAAGAACAAGGAGAAATCTCAATTGATAGCCAAACTAATGGAGGTCAATCTTTTATTCTTTTCTCTTTCCATTTATATATATATATATTTTTTTTTATTTCCCTTAAAATTATATAAATTATATAAATGAATTATTAAATCCCTCATAATTACATAAATGGGATTATTACAATTATCCATTGTAGCAATTATAGTAATAATTAATTAAAATATATTATATATTTGATGGTAAATTTGAATGATTTTGTCAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAGGAGCTCAGCAACAACATTGACATCCTTCATTAAGAAAACAAAAGTGTTTTCCTAAGTTCCTAACCCTAAATAACTCTCCTTCTCATTATATTTTCT

mRNA sequence

ATCATCATCATCATCATCATCATCATCATTTGCGAGAGAGAAGGCATGACGACGCAGAAACAGAGCTGGGAGGCGCAACAATCGCAGATGCAGCAGAGAGTGAAGAAGGCGATTGGGAGTCCGGCGAGGGAGGATCAAGAGGAGGAGCTTTCGCGATCGGCGTTGGCTCTGTTCCGCGCGAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGGGAGAAGGTGGAGAATCGTCTTGGACGAGCAGAAGAAGCGACGAAGCGATTGGCGGAGATCCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTGATCCGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGAATCACCTGCCAAAAGAAGGAGAGAGAATACAAGGAAGTACTAGAGTTATTGAACGAGAAGAACAAGGAGAAATCTCAATTGATAGCCAAACTAATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAGGAGCTCAGCAACAACATTGACATCCTTCATTAAGAAAACAAAAGTGTTTTCCTAAGTTCCTAACCCTAAATAACTCTCCTTCTCATTATATTTTCT

Coding sequence (CDS)

ATGACGACGCAGAAACAGAGCTGGGAGGCGCAACAATCGCAGATGCAGCAGAGAGTGAAGAAGGCGATTGGGAGTCCGGCGAGGGAGGATCAAGAGGAGGAGCTTTCGCGATCGGCGTTGGCTCTGTTCCGCGCGAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGGGAGAAGGTGGAGAATCGTCTTGGACGAGCAGAAGAAGCGACGAAGCGATTGGCGGAGATCCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTGATCCGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGAATCACCTGCCAAAAGAAGGAGAGAGAATACAAGGAAGTACTAGAGTTATTGAACGAGAAGAACAAGGAGAAATCTCAATTGATAGCCAAACTAATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAGGAGCTCAGCAACAACATTGACATCCTTCATTAA

Protein sequence

MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH

Homology

[Close]

BLAST of Carg28202 vs. NCBI nr
Match: XP_022930056.1 (uncharacterized protein LOC111436527 [Cucurbita moschata] >KAG6583639.1 hypothetical protein SDJN03_19571, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019311.1 hypothetical protein SDJN02_18271 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.0 bits (754), Expect = 4.0e-76
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60
           MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK
Sbjct: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60

Query: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120
           VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE
Sbjct: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120

Query: 121 YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 169
           YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
Sbjct: 121 YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 168

[Close]

BLAST of Carg28202 vs. NCBI nr
Match: XP_022970344.1 (uncharacterized protein LOC111469338 [Cucurbita maxima])

HSP 1 Score: 294.7 bits (753), Expect = 5.2e-76
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60
           MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK
Sbjct: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60

Query: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120
           VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE
Sbjct: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120

Query: 121 YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 169
           YKEVLELLNEKNKEKSQL+AKLMELVNESEKLRMKKLEELSNNIDILH
Sbjct: 121 YKEVLELLNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSNNIDILH 168

[Close]

BLAST of Carg28202 vs. NCBI nr
Match: XP_023519806.1 (uncharacterized protein LOC111783139 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60
           MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK
Sbjct: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60

Query: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120
           VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE
Sbjct: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120

Query: 121 YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 169
           YKEVLELLNEKNKEKS+LIAKLMELVNESEKLRM KLEELSNNIDILH
Sbjct: 121 YKEVLELLNEKNKEKSELIAKLMELVNESEKLRMNKLEELSNNIDILH 168

[Close]

BLAST of Carg28202 vs. NCBI nr
Match: XP_038893849.1 (uncharacterized protein LOC120082661 [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 153/178 (85.96%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQMQQRVK----------KAIGSPAREDQEEELSRSALALFRAKEEEI 60
           MTT KQSWEAQQSQ  QRVK           AIGSP +EDQEEE+SRSALA+FRAKEEEI
Sbjct: 1   MTTPKQSWEAQQSQQMQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEI 60

Query: 61  ERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPL 120
           ERKKMEMREKVE RLGRAEEATKRLAEIREELEGMTDPMRKEVS IRKKIDLVNKELKPL
Sbjct: 61  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120

Query: 121 GITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 169
           G+TCQKKEREYKEVL+L NEKNKEKSQL+AKLMELVNESEKLRMKKLEELS NIDILH
Sbjct: 121 GLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 178

[Close]

BLAST of Carg28202 vs. NCBI nr
Match: XP_008461743.1 (PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo] >KAA0040914.1 putative DNA double-strand break repair Rad50 ATPase [Cucumis melo var. makuwa] >TYK10622.1 putative DNA double-strand break repair Rad50 ATPase [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 3.5e-64
Identity = 147/175 (84.00%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQ-------MQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERK 60
           MTTQKQSWEAQQ Q       +   V   IGSP +EDQEEE+SRSALALFRAKEEEIERK
Sbjct: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIERK 60

Query: 61  KMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGIT 120
           KMEMREKVE RLGRAEEATKRLAEIREELEGMTDPMRKEVS IRKKIDLVNKELKPLG+T
Sbjct: 61  KMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLT 120

Query: 121 CQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 169
           CQKKEREYKEVL+L NEKN+EKSQL++KLMELVNESEKLRM+KLEELS NIDILH
Sbjct: 121 CQKKEREYKEVLDLFNEKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

[Close]

BLAST of Carg28202 vs. ExPASy TrEMBL
Match: A0A6J1EPU7 (RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111436527 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60
           MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK
Sbjct: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60

Query: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120
           VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE
Sbjct: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120

Query: 121 YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 169
           YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH
Sbjct: 121 YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 168

[Close]

BLAST of Carg28202 vs. ExPASy TrEMBL
Match: A0A6J1I589 (RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111469338 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.5e-76
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60
           MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK
Sbjct: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60

Query: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120
           VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE
Sbjct: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120

Query: 121 YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 169
           YKEVLELLNEKNKEKSQL+AKLMELVNESEKLRMKKLEELSNNIDILH
Sbjct: 121 YKEVLELLNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSNNIDILH 168

[Close]

BLAST of Carg28202 vs. ExPASy TrEMBL
Match: A0A5D3CH78 (RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G001010 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.7e-64
Identity = 147/175 (84.00%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQ-------MQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERK 60
           MTTQKQSWEAQQ Q       +   V   IGSP +EDQEEE+SRSALALFRAKEEEIERK
Sbjct: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIERK 60

Query: 61  KMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGIT 120
           KMEMREKVE RLGRAEEATKRLAEIREELEGMTDPMRKEVS IRKKIDLVNKELKPLG+T
Sbjct: 61  KMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLT 120

Query: 121 CQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 169
           CQKKEREYKEVL+L NEKN+EKSQL++KLMELVNESEKLRM+KLEELS NIDILH
Sbjct: 121 CQKKEREYKEVLDLFNEKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

[Close]

BLAST of Carg28202 vs. ExPASy TrEMBL
Match: A0A1S3CFV6 (RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500274 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.7e-64
Identity = 147/175 (84.00%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQ-------MQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERK 60
           MTTQKQSWEAQQ Q       +   V   IGSP +EDQEEE+SRSALALFRAKEEEIERK
Sbjct: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIERK 60

Query: 61  KMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGIT 120
           KMEMREKVE RLGRAEEATKRLAEIREELEGMTDPMRKEVS IRKKIDLVNKELKPLG+T
Sbjct: 61  KMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLT 120

Query: 121 CQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDILH 169
           CQKKEREYKEVL+L NEKN+EKSQL++KLMELVNESEKLRM+KLEELS NIDILH
Sbjct: 121 CQKKEREYKEVLDLFNEKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

[Close]

BLAST of Carg28202 vs. ExPASy TrEMBL
Match: A0A0A0LY59 (RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 150/178 (84.27%), Postives = 157/178 (88.20%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQMQQRVKKA-----------IGSPAREDQEEELSRSALALFRAKEEE 60
           MTTQKQSWEAQQ    QRVK +           IGSP +EDQEEE+SRSALALFRAKEEE
Sbjct: 1   MTTQKQSWEAQQ---MQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEE 60

Query: 61  IERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKP 120
           IERKKMEMREKVE RLGRAEEATKRLAEIREELEGMTDPMRKEVS IRKKIDLVNKELKP
Sbjct: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120

Query: 121 LGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDIL 168
           LG+TCQKKEREYKEVL+L NEKNKEKSQL++KLMELVNESEKLRMKKLEELS NIDIL
Sbjct: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDIL 175

[Close]

BLAST of Carg28202 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 185.7 bits (470), Expect = 3.2e-47
Identity = 103/138 (74.64%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 31  QEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMR 90
           ++EE+SR+AL+ FRAKEEEIE+KKME+RE+V+ +LGR EE TKRLA IREELEG+ DPMR
Sbjct: 41  EDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIREELEGLADPMR 100

Query: 91  KEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESE 150
           KEV+++RKKID VNKELKPLG T QKKEREYKE LE  NEKN+EK QLI +LMELV ESE
Sbjct: 101 KEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITRLMELVGESE 160

Query: 151 KLRMKKLEELSNNIDILH 169
           K+RMKKLEELS NID +H
Sbjct: 161 KMRMKKLEELSKNIDSIH 178

[Close]

BLAST of Carg28202 vs. TAIR 10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 182.2 bits (461), Expect = 3.5e-46
Identity = 106/171 (61.99%), Postives = 138/171 (80.70%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQMQQRVKKA-----IGSPAREDQEEELSRSALALFRAKEEEIERKKM 60
           M T +Q  E  QS   QR+K +      GSP  +++EEELS+SA ALF+AKE+EIER+KM
Sbjct: 1   MATTRQILEQPQSPFIQRIKSSGNISMNGSPMIDEKEEELSQSAFALFKAKEDEIERRKM 60

Query: 61  EMREKVENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQ 120
           E++++V+ +LG AEEAT+RLAEIREELE +TDPMRKE+S IRK++D +N+ELKPLG +CQ
Sbjct: 61  EVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAIRKRVDAINRELKPLGQSCQ 120

Query: 121 KKEREYKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNIDI 167
           +KERE+KE LE  NEKNKEK+  ++KL+ELV ESEKLRM KLEELS +I+I
Sbjct: 121 RKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIEI 171

[Close]

BLAST of Carg28202 vs. TAIR 10
Match: AT2G36410.2 (Family of unknown function (DUF662) )

HSP 1 Score: 171.4 bits (433), Expect = 6.2e-43
Identity = 95/135 (70.37%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 31  QEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMR 90
           ++EE++RSAL+ FRAKE+EIE+++ME+RE+++ +LGR E+ TKRL+ IREELE M DPMR
Sbjct: 56  EDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLSTIREELESMADPMR 115

Query: 91  KEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESE 150
           KEVS++RKKID VNKELKPLG T QKKEREYKE L+  NEKN+EK QLI KLMELV ESE
Sbjct: 116 KEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMELVGESE 175

Query: 151 KLRMKKLEELSNNID 166
           KLRM KLEELS +I+
Sbjct: 176 KLRMIKLEELSKSIE 190

[Close]

BLAST of Carg28202 vs. TAIR 10
Match: AT3G52920.2 (Family of unknown function (DUF662) )

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-42
Identity = 103/165 (62.42%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 1   MTTQKQSWEAQQSQMQQRVKKAIGSPAREDQEEELSRSALALFRAKEEEIERKKMEMREK 60
           MTT  ++     +Q  Q++     S     ++EE++RSAL+ FRAKE+EIE++KME+RE+
Sbjct: 1   MTTTNEA----TTQPPQQMMSLSFSSQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRER 60

Query: 61  VENRLGRAEEATKRLAEIREELEGMTDPMRKEVSLIRKKIDLVNKELKPLGITCQKKERE 120
           V+ +LGR EE T+RLA IREELE M DPMRKEV+ +RKKID VNKELKPLG T QKKERE
Sbjct: 61  VKAQLGRVEEETRRLASIREELETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKERE 120

Query: 121 YKEVLELLNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSNNID 166
           YKE L+  NEKN+EK QLI KLMELV ESEKLR+KKL+ELS +ID
Sbjct: 121 YKEALDTFNEKNREKVQLITKLMELVGESEKLRLKKLDELSRSID 161

[Close]

BLAST of Carg28202 vs. TAIR 10
Match: AT2G36410.3 (Family of unknown function (DUF662) )

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-41
Identity = 93/135 (68.89%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 31  QEEELSRSALALFRAKEEEIERKKMEMREKVENRLGRAEEATKRLAEIREELEGMTDPMR 90
           ++EE++RSAL+ FRAKE+EIE+++ME+RE+++ +LGR E+ TKRL+ IREELE M DPMR
Sbjct: 56  EDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLSTIREELESMADPMR 115

Query: 91  KEVSLIRKKIDLVNKELKPLGITCQKKEREYKEVLELLNEKNKEKSQLIAKLMELVNESE 150
           KEVS++RKKID VNKELKPLG T QKK  EYKE L+  NEKN+EK QLI KLMELV ESE
Sbjct: 116 KEVSVVRKKIDSVNKELKPLGSTVQKKVMEYKEALDTFNEKNREKVQLITKLMELVGESE 175

Query: 151 KLRMKKLEELSNNID 166
           KLRM KLEELS +I+
Sbjct: 176 KLRMIKLEELSKSIE 190

The following BLAST results are available for this feature:

BLAST of Carg28202 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930056.1	4.0e-76	100.00	uncharacterized protein LOC111436527 [Cucurbita moschata] >KAG6583639.1 hypothet...	[more]
XP_022970344.1	5.2e-76	99.40	uncharacterized protein LOC111469338 [Cucurbita maxima]	[more]
XP_023519806.1	3.4e-75	98.81	uncharacterized protein LOC111783139 [Cucurbita pepo subsp. pepo]	[more]
XP_038893849.1	1.3e-66	85.96	uncharacterized protein LOC120082661 [Benincasa hispida]	[more]
XP_008461743.1	3.5e-64	84.00	PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo] >...	[more]

BLAST of Carg28202 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg28202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPU7	1.9e-76	100.00	RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111436527 PE=3 SV=1	[more]
A0A6J1I589	2.5e-76	99.40	RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111469338 PE=3 SV=1	[more]
A0A5D3CH78	1.7e-64	84.00	RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFV6	1.7e-64	84.00	RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500274 PE=3 SV=1	[more]
A0A0A0LY59	1.1e-63	84.27	RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=3 SV=1	[more]

BLAST of Carg28202 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09980.1	3.2e-47	74.64	Family of unknown function (DUF662)	[more]
AT2G27740.1	3.5e-46	61.99	Family of unknown function (DUF662)	[more]
AT2G36410.2	6.2e-43	70.37	Family of unknown function (DUF662)	[more]
AT3G52920.2	3.1e-42	62.42	Family of unknown function (DUF662)	[more]
AT2G36410.3	2.0e-41	68.89	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..81
None	No IPR available	COILS	Coil	Coil	coord: 114..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR21470:SF15	BNAC03G73270D PROTEIN	coord: 29..167
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 26..165 e-value: 5.5E-67 score: 224.4
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 29..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28202-RA	Carg28202-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus