Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAGAGGAAGTTGAAGCAATGGGACTCTCCGATCATCTCCGTACCTTACTGAAGTTTTTCCGGCTTACAGAGGTTTTTGCTGCGATGGCATTTCTCGTTTGGACGTTTAGTCGCCTCCCTTTGATTCTCAGAGTTTCGAGCGATTACATTTCTCAAATCTCCGGTTATTTTACAAGTCCGATTTTCGGCTTCATGCTCTGTAACACCATTATCATCGCTCTAATTTCCAAGCCCCACCGCTTCTCCGGCGGAAAAAATTCACCGTGACAATGTTGAAACGGAGCTCGTAAACGAACTGGTAAAAGACGGGGCTCTTACGTCTCTGTCTTTGCCTGGGAGTGAAGCCGAATGGGCGGCTCTGCTCTGACCTAGAGCTTGAGGAGATTGCGTACGAGGACAAAGAGGTAATTTCAGAGGTGAGCTCAACAACGGCAGCGGCCTTCACTGAAGAAATAGAGGATTTCAGTTCGGGATCGGAGAAATTGAAGCTAGCATGGAGCGAATTCGGTGGAGGAGAGTTCGGGCGAGCAGAGGTAGAGGAGGAGGCGATTTGGGGGAGGAGGGGTTTTGCCGGAAAGTGTACGGCAGGGGGAGGAGCTGAGCAATAAGGAGTTTGAGCGAAGGATCGACGCGTTCATTGCACGAGAGTTGAGGTTTCGCTGGGAAGAATCCGGCGCCGTCGTCCTCCCAACTGGAAGTTGCCTCCGAGGTTAA
mRNA sequence
ATGAAAACAGAGGAAGTTGAAGCAATGGGACTCTCCGATCATCTCCGTACCTTACTGAAGTTTTTCCGGCTTACAGAGGTTTTTGCTGCGATGGCATTTCTCGTTTGGACGTTTAGTCGCCTCCCTTTGATTCTCAGAGTTTCGAGCGATTACATTTCTCAAATCTCCGTGAAGCCGAATGGGCGGCTCTGCTCTGACCTAGAGCTTGAGGAGATTGCGTACGAGGACAAAGAGGTAATTTCAGAGGTGAGCTCAACAACGGCAGCGGCCTTCACTGAAGAAATAGAGGATTTCAGTTCGGGATCGGAGAAATTGAAGCTAGCATGGAGCGAATTCGGTGGAGGAGAGTTCGGGCGAGCAGAGGGGGAGGAGCTGAGCAATAAGGAGTTTGAGCGAAGGATCGACGCGTTCATTGCACGAGAGTTGAGGTTTCGCTGGGAAGAATCCGGCGCCGTCGTCCTCCCAACTGGAAGTTGCCTCCGAGGTTAA
Coding sequence (CDS)
ATGAAAACAGAGGAAGTTGAAGCAATGGGACTCTCCGATCATCTCCGTACCTTACTGAAGTTTTTCCGGCTTACAGAGGTTTTTGCTGCGATGGCATTTCTCGTTTGGACGTTTAGTCGCCTCCCTTTGATTCTCAGAGTTTCGAGCGATTACATTTCTCAAATCTCCGTGAAGCCGAATGGGCGGCTCTGCTCTGACCTAGAGCTTGAGGAGATTGCGTACGAGGACAAAGAGGTAATTTCAGAGGTGAGCTCAACAACGGCAGCGGCCTTCACTGAAGAAATAGAGGATTTCAGTTCGGGATCGGAGAAATTGAAGCTAGCATGGAGCGAATTCGGTGGAGGAGAGTTCGGGCGAGCAGAGGGGGAGGAGCTGAGCAATAAGGAGTTTGAGCGAAGGATCGACGCGTTCATTGCACGAGAGTTGAGGTTTCGCTGGGAAGAATCCGGCGCCGTCGTCCTCCCAACTGGAAGTTGCCTCCGAGGTTAA
Protein sequence
MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISVKPNGRLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAEGEELSNKEFERRIDAFIARELRFRWEESGAVVLPTGSCLRG
Homology
BLAST of Carg28194 vs. NCBI nr
Match:
KAG7033985.1 (hypothetical protein SDJN02_03711, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISVKPN 60
MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISVKPN
Sbjct: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISVKPN 60
Query: 61 GRLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRA 120
GRLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRA
Sbjct: 61 GRLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRA 120
Query: 121 EGEELSNKEFERRIDAFIARELRFRWEESGAVVLPTGSCLRG 163
EGEELSNKEFERRIDAFIARELRFRWEESGAVVLPTGSCLRG
Sbjct: 121 EGEELSNKEFERRIDAFIARELRFRWEESGAVVLPTGSCLRG 162
BLAST of Carg28194 vs. NCBI nr
Match:
KAG6603959.1 (hypothetical protein SDJN03_04568, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 270.8 bits (691), Expect = 7.7e-69
Identity = 160/238 (67.23%), Postives = 161/238 (67.65%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS
Sbjct: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60
Query: 61 ------------------------------------------------------VKPNGR 120
+PNGR
Sbjct: 61 SPIFGFMLCNTIIIALISKPHRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120
Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE
Sbjct: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAEV 180
BLAST of Carg28194 vs. NCBI nr
Match:
XP_022950349.1 (uncharacterized protein LOC111453461 [Cucurbita moschata])
HSP 1 Score: 264.6 bits (675), Expect = 5.5e-67
Identity = 159/238 (66.81%), Postives = 159/238 (66.81%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
MKTEEVEAMGLSDHLRTLLKF R TEVFAAMAFLVWTFSRLPLILRVSSDYISQIS
Sbjct: 1 MKTEEVEAMGLSDHLRTLLKFLRFTEVFAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60
Query: 61 -----------------------------------------VK-------------PNGR 120
VK PNGR
Sbjct: 61 SPVFGFMLCNTIIIALIAKPPRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSGPNGR 120
Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDF SGSEKLKLAWSEFGGGEFGRAE
Sbjct: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFCSGSEKLKLAWSEFGGGEFGRAEV 180
BLAST of Carg28194 vs. NCBI nr
Match:
XP_022977278.1 (uncharacterized protein LOC111477644 [Cucurbita maxima])
HSP 1 Score: 262.7 bits (670), Expect = 2.1e-66
Identity = 156/238 (65.55%), Postives = 158/238 (66.39%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
MKTEEVEAMGLSDHLRTLLKFFR TEVFAAMA LVWTFSRLPLILRVSSDYISQIS
Sbjct: 1 MKTEEVEAMGLSDHLRTLLKFFRFTEVFAAMALLVWTFSRLPLILRVSSDYISQISGYFT 60
Query: 61 ------------------------------------------------------VKPNGR 120
+PNGR
Sbjct: 61 SPVFGFMLCNTIIIALIAKPHRFSGEKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120
Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
LCSD+ELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEF RAE
Sbjct: 121 LCSDVELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFERAEV 180
BLAST of Carg28194 vs. NCBI nr
Match:
XP_023543998.1 (uncharacterized protein LOC111803706 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 153/238 (64.29%), Postives = 156/238 (65.55%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
MKTEEVEAMGLSDHLRTLLKF R TEV AAMAFLVWTFSRLPLILRVSSDYISQIS
Sbjct: 1 MKTEEVEAMGLSDHLRTLLKFLRFTEVSAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60
Query: 61 ------------------------------------------------------VKPNGR 120
+PNGR
Sbjct: 61 SPVFGFMLCNTIIIALIAKPHRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120
Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
LCSDLELEEIAYEDKEVISEV STTAAAFTEEIEDFSSGSEKLKLAWSEFGGG FGRAE
Sbjct: 121 LCSDLELEEIAYEDKEVISEVRSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGVFGRAEV 180
BLAST of Carg28194 vs. ExPASy TrEMBL
Match:
A0A6J1GFJ2 (uncharacterized protein LOC111453461 OS=Cucurbita moschata OX=3662 GN=LOC111453461 PE=4 SV=1)
HSP 1 Score: 264.6 bits (675), Expect = 2.7e-67
Identity = 159/238 (66.81%), Postives = 159/238 (66.81%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
MKTEEVEAMGLSDHLRTLLKF R TEVFAAMAFLVWTFSRLPLILRVSSDYISQIS
Sbjct: 1 MKTEEVEAMGLSDHLRTLLKFLRFTEVFAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60
Query: 61 -----------------------------------------VK-------------PNGR 120
VK PNGR
Sbjct: 61 SPVFGFMLCNTIIIALIAKPPRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSGPNGR 120
Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDF SGSEKLKLAWSEFGGGEFGRAE
Sbjct: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFCSGSEKLKLAWSEFGGGEFGRAEV 180
BLAST of Carg28194 vs. ExPASy TrEMBL
Match:
A0A6J1IPH9 (uncharacterized protein LOC111477644 OS=Cucurbita maxima OX=3661 GN=LOC111477644 PE=4 SV=1)
HSP 1 Score: 262.7 bits (670), Expect = 1.0e-66
Identity = 156/238 (65.55%), Postives = 158/238 (66.39%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
MKTEEVEAMGLSDHLRTLLKFFR TEVFAAMA LVWTFSRLPLILRVSSDYISQIS
Sbjct: 1 MKTEEVEAMGLSDHLRTLLKFFRFTEVFAAMALLVWTFSRLPLILRVSSDYISQISGYFT 60
Query: 61 ------------------------------------------------------VKPNGR 120
+PNGR
Sbjct: 61 SPVFGFMLCNTIIIALIAKPHRFSGEKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120
Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
LCSD+ELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEF RAE
Sbjct: 121 LCSDVELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFERAEV 180
BLAST of Carg28194 vs. ExPASy TrEMBL
Match:
A0A0A0KM84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502870 PE=4 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 3.5e-43
Identity = 115/231 (49.78%), Postives = 130/231 (56.28%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
MKT EV+AMG+ L+ ++K FR TEV AM FL+WTFSRLPL+LRVSSD+ISQIS
Sbjct: 1 MKTVEVKAMGVYKLLQIMVKIFRFTEVLVAMGFLIWTFSRLPLVLRVSSDFISQISNYFT 60
Query: 61 -------------------------------------------------------VKPNG 120
+PNG
Sbjct: 61 SPVFGFILCNIIIVSLIAKPHNFSCGKINSDKNVETVLFNELVEDGAVTSLSLAGSEPNG 120
Query: 121 RLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE 155
RLCSD E EEIAYEDKEVISEV+ST A F+E++EDF SEKLKL W E+GGGE R +
Sbjct: 121 RLCSDTEQEEIAYEDKEVISEVTSTQTAVFSEKMEDFGLESEKLKLLWREYGGGELRRVK 180
BLAST of Carg28194 vs. ExPASy TrEMBL
Match:
A0A5A7SYQ4 (Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001910 PE=4 SV=1)
HSP 1 Score: 180.6 bits (457), Expect = 5.1e-42
Identity = 112/231 (48.48%), Postives = 132/231 (57.14%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
MKTE V+AMG+ + L++++K FR TEV AM FL+WTFSRLPL+L+VSSD+ISQIS
Sbjct: 1 MKTEGVKAMGVYNLLQSMVKIFRFTEVLGAMGFLIWTFSRLPLVLKVSSDFISQISNYFT 60
Query: 61 -------------------------------------------------------VKPNG 120
+PNG
Sbjct: 61 SPVFGFILCNIIIVSLIAKPHNFSGGKINGDNDVETELFNELVEDGAVTSLSLAGSEPNG 120
Query: 121 RLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE 155
RLCSD E E+IAYEDKEVISEV+ST AA FTE++E+F SEKLKL W+EFGGGE R +
Sbjct: 121 RLCSDTEQEKIAYEDKEVISEVTSTRAAVFTEKMENFGLESEKLKLVWTEFGGGELRRLK 180
BLAST of Carg28194 vs. ExPASy TrEMBL
Match:
A0A1S3B3G2 (uncharacterized protein LOC103485351 OS=Cucumis melo OX=3656 GN=LOC103485351 PE=4 SV=1)
HSP 1 Score: 180.6 bits (457), Expect = 5.1e-42
Identity = 112/231 (48.48%), Postives = 132/231 (57.14%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
MKTE V+AMG+ + L++++K FR TEV AM FL+WTFSRLPL+L+VSSD+ISQIS
Sbjct: 1 MKTEGVKAMGVYNLLQSMVKIFRFTEVLGAMGFLIWTFSRLPLVLKVSSDFISQISNYFT 60
Query: 61 -------------------------------------------------------VKPNG 120
+PNG
Sbjct: 61 SPVFGFILCNIIIVSLIAKPHNFSGGKINGDNDVETELFNELVEDGAVTSLSLAGSEPNG 120
Query: 121 RLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE 155
RLCSD E E+IAYEDKEVISEV+ST AA FTE++E+F SEKLKL W+EFGGGE R +
Sbjct: 121 RLCSDTEQEKIAYEDKEVISEVTSTRAAVFTEKMENFGLESEKLKLVWTEFGGGELRRLK 180
BLAST of Carg28194 vs. TAIR 10
Match:
AT5G66440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 42.4 bits (98), Expect = 4.2e-04
Identity = 18/56 (32.14%), Postives = 36/56 (64.29%), Query Frame = 0
Query: 1 MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS 57
+K E+ +A+ + + +FFR EV A+ F+ WTFS+LP ++++S ++ +I+
Sbjct: 9 VKAEKAKALRRFNRFCRIGRFFRAAEVCVALLFIFWTFSQLPFVVQISGAFLRRIA 64
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7033985.1 | 2.3e-81 | 100.00 | hypothetical protein SDJN02_03711, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6603959.1 | 7.7e-69 | 67.23 | hypothetical protein SDJN03_04568, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022950349.1 | 5.5e-67 | 66.81 | uncharacterized protein LOC111453461 [Cucurbita moschata] | [more] |
XP_022977278.1 | 2.1e-66 | 65.55 | uncharacterized protein LOC111477644 [Cucurbita maxima] | [more] |
XP_023543998.1 | 1.5e-64 | 64.29 | uncharacterized protein LOC111803706 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GFJ2 | 2.7e-67 | 66.81 | uncharacterized protein LOC111453461 OS=Cucurbita moschata OX=3662 GN=LOC1114534... | [more] |
A0A6J1IPH9 | 1.0e-66 | 65.55 | uncharacterized protein LOC111477644 OS=Cucurbita maxima OX=3661 GN=LOC111477644... | [more] |
A0A0A0KM84 | 3.5e-43 | 49.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502870 PE=4 SV=1 | [more] |
A0A5A7SYQ4 | 5.1e-42 | 48.48 | Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS... | [more] |
A0A1S3B3G2 | 5.1e-42 | 48.48 | uncharacterized protein LOC103485351 OS=Cucumis melo OX=3656 GN=LOC103485351 PE=... | [more] |
Match Name | E-value | Identity | Description | |
AT5G66440.1 | 4.2e-04 | 32.14 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |