Carg28177 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28177
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NUC173 domain-containing protein
Location	Carg_Chr10: 3881107 .. 3882902 (-)
RNA-Seq Expression	Carg28177
Synteny	Carg28177

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGAAGGCCTTGAGATGGAGGCATCGTTCGAATTTGAATCCAACGATGACTTCTGTGACTTGATTCTCTCACGTTTCAGCAATTCCAGCAATGAAAATCATCAGCATGTTTGCGCCGTCATTGGCGCCATGGCTCAGGAGCTCAGAGACCAGAGTCTTCCTTCCACTCCAGTTGCCTACTTCGGCGCCTCCTGTTCGTCTTTAGACCGTATCTCCTCTGAGCCTGACCCGCCGCCTCATCTTCTTGACGCGCTTCTTACCATTCTGTCTCTGCTTCTCCCGCGAATTTCCCCTCCGATTTTGAATAAGAAGAAGGAGTTTTTGTCGGGCCTTCTTATTCGCGTTCTTCGTATACCGTCGTTGACTCCCGGTGCGGTTACATTCGGACTTAATTGTGTTTCGCATTTGGTGGTTGTTAGGAATGCTGTCAACTGGTCGGATGTGTCTAATTTGTTCGGGTTTATTCTTGGGTTCGCTATTGATTCGCGCCCTAAGGTGATTTCTTACAACTCTTATCCGATTCATTGCTTACGATCATTTGGATTTTTTTTTTTAAAAATGCGTGTACTTGAAATCCTGGTGTTTTGATCTCTTTGTGTATTGGGCAATTTGAATGGTTTTTGAATGTTTGCTATCTGAATGAAGTACTGATTGTGGCTGAACAGGTTAGAAGGCAATCGCACATTTGTCTTCGGGATGTCTTGTTAAAAGTTCAGGGAACGTCACTCCTCCCCTCTGCTAGCGAAGGGATCACCAATGTTCTTGAAAAATCTCTTTTACTCGCGGGTGGCTCAAACCCGACGGCTACTGAAAGACCTAAAGGAGCTCAGGAGGTTCTATTTATTTTGGAGGCTTTGCGGGAGTGTCTACCTCTCATGTCAATGAAGTATATTACTAACATACTTAAATACTACAAAACTCTTTTGGAGCTGCACCAACCTGTTGTTACTAAGCGCATTACGGATAGTTTGAACTCACTTTGTCTCCACCCAACTGTTGATGTTTCTGCGGAAGTACTGCTTGATCTTTTATGTTCTATGGCATTATCTTTTTCTACGAGTGAAACATCTGCAGATGGCCTGGCTTTCACAGCTCGCCTGCTTAATGTTGGGATGCAAAAAGTTTATAATGTTAATAGGCAGATATGTGTAGTTAAGCTCCCTGTTGCTTTCAATGCACTCAAAGGTTTAATGCTTGCTTTAAAACTTCTAGTTAAGTTCACACTCGTTTCTTCATTGCTTGTGGAAAAAGATGCAATTAATTTGTAACGTTCATGTTGGATTGACAGATATTATGCTATCTGATCACGAGGAGGCAATTCGAGCTGCCCAGGATGCTATGAAAAATCTGATAAGTTCTTGCATTGATGAAGACTTGATCAGAAAGGGTGTGGATCAGATTAGGACGACTGAAAATGTGGAGGCAAGGAGGTCTGGGCCGACCGTAGTAGAAAAACTATGTGCTATTATAGAAAGTTTACTTGATTATCATTACACTGCTGTTTTCGACTTGGCTTTTCAAGTTGTTTCAGCCATGTTTGGTAAATTAGGTATTTTTGAACTACTTGATCTTATTGAATTTCCTCTTCACTCATCATTTGACATGTTACTTAAATTATCATTTCCTTTGTATGTTTGTCGTCCCATTTTTCAATGTGAAAAGGTCTTGGTTCATTATTGTGCAGGGAAATATCTTCTTACTTCCTGAAAGGAGCCCTTAATAGCCTGGCAAACATGCAGAAATTGCCAGATGAAGACTTCCCCTTCGAAAGAGTATTCTTCCTGAGTTAA

mRNA sequence

ATGGCCATGGAAGGCCTTGAGATGGAGGCATCGTTCGAATTTGAATCCAACGATGACTTCTGTGACTTGATTCTCTCACGTTTCAGCAATTCCAGCAATGAAAATCATCAGCATGTTTGCGCCGTCATTGGCGCCATGGCTCAGGAGCTCAGAGACCAGAGTCTTCCTTCCACTCCAGTTGCCTACTTCGGCGCCTCCTGTTCGTCTTTAGACCGTATCTCCTCTGAGCCTGACCCGCCGCCTCATCTTCTTGACGCGCTTCTTACCATTCTGTCTCTGCTTCTCCCGCGAATTTCCCCTCCGATTTTGAATAAGAAGAAGGAGTTTTTGTCGGGCCTTCTTATTCGCGTTCTTCGTATACCGTCGTTGACTCCCGGTGCGGTTACATTCGGACTTAATTGTGTTTCGCATTTGGTGGTTGTTAGGAATGCTGTCAACTGGTCGGATGTGTCTAATTTGTTCGGGTTTATTCTTGGGTTCGCTATTGATTCGCGCCCTAAGGTTAGAAGGCAATCGCACATTTGTCTTCGGGATGTCTTGTTAAAAGTTCAGGGAACGTCACTCCTCCCCTCTGCTAGCGAAGGGATCACCAATGTTCTTGAAAAATCTCTTTTACTCGCGGGTGGCTCAAACCCGACGGCTACTGAAAGACCTAAAGGAGCTCAGGAGGTTCTATTTATTTTGGAGGCTTTGCGGGAGTGTCTACCTCTCATGTCAATGAAGTATATTACTAACATACTTAAATACTACAAAACTCTTTTGGAGCTGCACCAACCTGTTGTTACTAAGCGCATTACGGATAGTTTGAACTCACTTTGTCTCCACCCAACTGTTGATGTTTCTGCGGAAGTACTGCTTGATCTTTTATGTTCTATGGCATTATCTTTTTCTACGAGTGAAACATCTGCAGATGGCCTGGCTTTCACAGCTCGCCTGCTTAATGTTGGGATGCAAAAAGTTTATAATGTTAATAGGCAGATATGTGTAGTTAAGCTCCCTGTTGCTTTCAATGCACTCAAAGATATTATGCTATCTGATCACGAGGAGGCAATTCGAGCTGCCCAGGATGCTATGAAAAATCTGATAAGTTCTTGCATTGATGAAGACTTGATCAGAAAGGGTGTGGATCAGATTAGGACGACTGAAAATGTGGAGGCAAGGAGGTCTGGGCCGACCGTAGTAGAAAAACTATGTGCTATTATAGAAAGTTTACTTGATTATCATTACACTGCTGTTTTCGACTTGGCTTTTCAAGTTGTTTCAGCCATGTTTGGTAAATTAGGTATTTTTGAACTACTTGATCTTATTGAATTTCCTCTTCACTCATCATTTGACATGGAAATATCTTCTTACTTCCTGAAAGGAGCCCTTAATAGCCTGGCAAACATGCAGAAATTGCCAGATGAAGACTTCCCCTTCGAAAGAGTATTCTTCCTGAGTTAA

Coding sequence (CDS)

ATGGCCATGGAAGGCCTTGAGATGGAGGCATCGTTCGAATTTGAATCCAACGATGACTTCTGTGACTTGATTCTCTCACGTTTCAGCAATTCCAGCAATGAAAATCATCAGCATGTTTGCGCCGTCATTGGCGCCATGGCTCAGGAGCTCAGAGACCAGAGTCTTCCTTCCACTCCAGTTGCCTACTTCGGCGCCTCCTGTTCGTCTTTAGACCGTATCTCCTCTGAGCCTGACCCGCCGCCTCATCTTCTTGACGCGCTTCTTACCATTCTGTCTCTGCTTCTCCCGCGAATTTCCCCTCCGATTTTGAATAAGAAGAAGGAGTTTTTGTCGGGCCTTCTTATTCGCGTTCTTCGTATACCGTCGTTGACTCCCGGTGCGGTTACATTCGGACTTAATTGTGTTTCGCATTTGGTGGTTGTTAGGAATGCTGTCAACTGGTCGGATGTGTCTAATTTGTTCGGGTTTATTCTTGGGTTCGCTATTGATTCGCGCCCTAAGGTTAGAAGGCAATCGCACATTTGTCTTCGGGATGTCTTGTTAAAAGTTCAGGGAACGTCACTCCTCCCCTCTGCTAGCGAAGGGATCACCAATGTTCTTGAAAAATCTCTTTTACTCGCGGGTGGCTCAAACCCGACGGCTACTGAAAGACCTAAAGGAGCTCAGGAGGTTCTATTTATTTTGGAGGCTTTGCGGGAGTGTCTACCTCTCATGTCAATGAAGTATATTACTAACATACTTAAATACTACAAAACTCTTTTGGAGCTGCACCAACCTGTTGTTACTAAGCGCATTACGGATAGTTTGAACTCACTTTGTCTCCACCCAACTGTTGATGTTTCTGCGGAAGTACTGCTTGATCTTTTATGTTCTATGGCATTATCTTTTTCTACGAGTGAAACATCTGCAGATGGCCTGGCTTTCACAGCTCGCCTGCTTAATGTTGGGATGCAAAAAGTTTATAATGTTAATAGGCAGATATGTGTAGTTAAGCTCCCTGTTGCTTTCAATGCACTCAAAGATATTATGCTATCTGATCACGAGGAGGCAATTCGAGCTGCCCAGGATGCTATGAAAAATCTGATAAGTTCTTGCATTGATGAAGACTTGATCAGAAAGGGTGTGGATCAGATTAGGACGACTGAAAATGTGGAGGCAAGGAGGTCTGGGCCGACCGTAGTAGAAAAACTATGTGCTATTATAGAAAGTTTACTTGATTATCATTACACTGCTGTTTTCGACTTGGCTTTTCAAGTTGTTTCAGCCATGTTTGGTAAATTAGGTATTTTTGAACTACTTGATCTTATTGAATTTCCTCTTCACTCATCATTTGACATGGAAATATCTTCTTACTTCCTGAAAGGAGCCCTTAATAGCCTGGCAAACATGCAGAAATTGCCAGATGAAGACTTCCCCTTCGAAAGAGTATTCTTCCTGAGTTAA

Protein sequence

MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPVAYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRIPSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVLLKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSMKYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSETSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKNLISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVVSAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFERVFFLS

Homology

[Close]

BLAST of Carg28177 vs. NCBI nr
Match: KAG7023749.1 (RRP12-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 926.4 bits (2393), Expect = 1.0e-265
Identity = 480/480 (100.00%), Postives = 480/480 (100.00%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV
Sbjct: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI
Sbjct: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL
Sbjct: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM
Sbjct: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE
Sbjct: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV
Sbjct: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFERVFFLS 480
           SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFERVFFLS
Sbjct: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFERVFFLS 480

[Close]

BLAST of Carg28177 vs. NCBI nr
Match: XP_022961179.1 (RRP12-like protein [Cucurbita moschata])

HSP 1 Score: 865.5 bits (2235), Expect = 2.1e-247
Identity = 453/475 (95.37%), Postives = 455/475 (95.79%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV
Sbjct: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI
Sbjct: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL
Sbjct: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM
Sbjct: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE
Sbjct: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV
Sbjct: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
           SAMFGKLG                  + SSYFLKGALNSLANMQKLPDEDFPF +
Sbjct: 421 SAMFGKLG------------------KYSSYFLKGALNSLANMQKLPDEDFPFRK 457

[Close]

BLAST of Carg28177 vs. NCBI nr
Match: KAG6590054.1 (RRP12-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 861.3 bits (2224), Expect = 4.0e-246
Identity = 451/475 (94.95%), Postives = 454/475 (95.58%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV
Sbjct: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGASCSSLDRISSEP+PPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI
Sbjct: 61  AYFGASCSSLDRISSEPEPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL
Sbjct: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM
Sbjct: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE
Sbjct: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV
Sbjct: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
           SAMF KLG                  + SSYFLKGALNSLANMQKLPDEDFPF +
Sbjct: 421 SAMFDKLG------------------KYSSYFLKGALNSLANMQKLPDEDFPFRK 457

[Close]

BLAST of Carg28177 vs. NCBI nr
Match: KAG7023720.1 (RRP12-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 861.3 bits (2224), Expect = 4.0e-246
Identity = 451/475 (94.95%), Postives = 454/475 (95.58%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV
Sbjct: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGASCSSLDRISSEP+PPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI
Sbjct: 61  AYFGASCSSLDRISSEPEPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL
Sbjct: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM
Sbjct: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE
Sbjct: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV
Sbjct: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
           SAMF KLG                  + SSYFLKGALNSLANMQKLPDEDFPF +
Sbjct: 421 SAMFDKLG------------------KYSSYFLKGALNSLANMQKLPDEDFPFRK 457

[Close]

BLAST of Carg28177 vs. NCBI nr
Match: XP_023515902.1 (RRP12-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 856.3 bits (2211), Expect = 1.3e-244
Identity = 448/475 (94.32%), Postives = 452/475 (95.16%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV
Sbjct: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI
Sbjct: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL
Sbjct: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPL+SM
Sbjct: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLLSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE
Sbjct: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LIS+CIDEDLIRKGVDQIRTTENVE RRSGPTVVEKLCAIIESLLDYHYTAVFDLAF VV
Sbjct: 361 LISACIDEDLIRKGVDQIRTTENVEPRRSGPTVVEKLCAIIESLLDYHYTAVFDLAFPVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
           SAMF KLG                  + SSYFLKGALNSLANMQKLPDEDFPF +
Sbjct: 421 SAMFDKLG------------------KYSSYFLKGALNSLANMQKLPDEDFPFRK 457

[Close]

BLAST of Carg28177 vs. ExPASy Swiss-Prot
Match: Q5ZKD5 (RRP12-like protein OS=Gallus gallus OX=9031 GN=RRP12 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-16
Identity = 101/446 (22.65%), Postives = 188/446 (42.15%), Query Frame = 0


Query: 25  LSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPVAYFGASCSSLDRISSEPDPPPHLL 84
           + RF  S++  H+ +CAV+ A+   +R Q    T   YF A  ++L+ + S     P  +
Sbjct: 112 VQRFWESNSAAHKEICAVLAAVTDVIRSQGGKETETEYFAALMTTLEAVDS-----PESV 171

Query: 85  DALLTILSLLLPRISPPILNKKKEFLSGLLIRVL--RIPSLTPGAVTFGLNCVSHLVVVR 144
            A+  +L+L+L R+  P+L KK    S   + ++  +  S +  A+ + L+C++ L+  +
Sbjct: 172 AAVAYLLNLVLKRVPSPVLIKKFSDASKAFMNIISSQACSGSTSALRWVLSCLATLLRKQ 231

Query: 145 NAVNWSDVSNL--FGFILGFAIDSRPKVRRQSHICLRDVLLKVQGTSLL----------- 204
           +   WS    L  +  +L F + ++PKVR+ +   +  VL   +G+  +           
Sbjct: 232 DLAAWSYPVTLQVYHGLLSFCVHTKPKVRKAAQHGVCSVL---RGSEFMFGDEAPEHHPA 291

Query: 205 -PSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSMKYITNILK 264
            PS+++     +EK    AGG+        K A   L +L  LR+ LP      +    +
Sbjct: 292 APSSAKFCVQEIEK----AGGT--------KEATTTLHVLALLRDLLPCFPAAVLKTCCE 351

Query: 265 YYKTLLELHQPVVTKRITDSLNSL-CLHPTVDVSAEVLLDLLCSMALSFSTSETSADGLA 324
               ++ L   +VT     + +SL    P        L   + +    +  S      L 
Sbjct: 352 TLLRVMTLSHVLVTACAMQAFHSLFSAQPRTSCLPAELNAQIITALYDYVPSANDLQPLL 411

Query: 325 FTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKNLISSCID 384
                +      +  + + +C   LP  F+A  +  LS H + + AA   ++ L++ CI 
Sbjct: 412 TWLTTMERAHVNLGRLQKDLCWAHLPRLFSATMNCFLSPHLQVVAAAAQTLETLLNECIA 471

Query: 385 EDLIRKGVDQIRTTENVEARRSGP-TVVEKLCAIIESLLDYHYTAVFDLAFQVVSAMFGK 444
             +   G        NV A    P + + K+   +E  L Y + A +D   QV+   F  
Sbjct: 472 PHMDELG--------NVSASTPAPGSYLCKMFRSVEEGLTYRFHAAWDGVLQVLEVFFEV 528

Query: 445 LGIFELLDLIEFPLHSSFDMEISSYF 453
            G  +   ++   L S  D+ +S +F
Sbjct: 532 CG-KQCHPIMRKCLQSLCDLRLSPHF 528

[Close]

BLAST of Carg28177 vs. ExPASy Swiss-Prot
Match: Q6P5B0 (RRP12-like protein OS=Mus musculus OX=10090 GN=Rrp12 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.9e-13
Identity = 94/443 (21.22%), Postives = 189/443 (42.66%), Query Frame = 0


Query: 25  LSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPVAYFGASCSSLDRISSEPDPPPHLL 84
           + RF  S++  H+ +CAV+ A+ + +R Q    T   YF A  ++++ + S     P  L
Sbjct: 110 VQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVES-----PESL 169

Query: 85  DALLTILSLLLPRISPPILNKKKEFLSGLLIRVL--RIPSLTPGAVTFGLNCVSHLVVVR 144
            A+  +L+L+L R+  P+L KK    S   + ++  +  S +  A+ + L+C++ L+  +
Sbjct: 170 AAVAYLLNLVLKRVPSPVLMKKFSDTSKAFMDIMSAQASSGSTSALRWVLSCLAILLRKQ 229

Query: 145 NAVNWSDVSNL--FGFILGFAIDSRPKVRR--QSHICL----RDVLLKVQGTSLLPSA-- 204
           +   W     L  +  +L F + ++PK+R+  Q  +C      D +   +  +  P+A  
Sbjct: 230 DLEAWGYPITLQVYHGLLSFTVHAKPKIRKAAQHGVCSVLKGSDFMFGEKAPAHHPAAVS 289

Query: 205 -SEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSMKYITNILKYYK 264
            ++     +EKS    GGS        K A   L +L  L++ LP      + +  +   
Sbjct: 290 TAKFCIQEIEKS----GGS--------KEATTTLHMLTLLKDMLPCFPEGLVKSCSETLL 349

Query: 265 TLLELHQPVVTKRITDSLNSLC-LHPTVDVSAEVLLDLLCSMALSFSTSETSADGLAFTA 324
            ++ L+  +VT     + ++L    P+    +  L   + +    +  SE     L    
Sbjct: 350 RVMTLNHVLVTACAMQAFHNLFHAKPSPSTLSAELNAQIVTALYDYVPSENDLQPLLAWL 409

Query: 325 RLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKNLISSCIDEDL 384
           +++      +  + R + +  L   F      +LS H +   AA   +K ++  C+    
Sbjct: 410 KVMEKAHINLVRLQRDLGLGHLARFFGTAVTCLLSPHSQVAAAATQTLKEILKECV---- 469

Query: 385 IRKGVDQIRTTENVEARRSG-PTVVEKLCAIIESLLDYHYTAVFDLAFQVVSAMFGKLGI 444
                  I    +V +  SG P  + K+   +E  L Y + A +    Q++   F   G 
Sbjct: 470 ----APHIADIGSVTSSASGPPQYITKMFRAVEEGLTYKFHAAWSSVLQLLGVFFEACG- 526

Query: 445 FELLDLIEFPLHSSFDMEISSYF 453
            +   +++  L S  D+ +S +F
Sbjct: 530 KQAHPVMKKCLQSLCDLRLSPHF 526

[Close]

BLAST of Carg28177 vs. ExPASy Swiss-Prot
Match: Q5JTH9 (RRP12-like protein OS=Homo sapiens OX=9606 GN=RRP12 PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-12
Identity = 91/438 (20.78%), Postives = 183/438 (41.78%), Query Frame = 0


Query: 25  LSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPVAYFGASCSSLDRISSEPDPPPHLL 84
           + RF  S++  H+ +CAV+ A+ + +R Q    T   YF A  ++++ + S     P  L
Sbjct: 110 VQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVES-----PESL 169

Query: 85  DALLTILSLLLPRISPPILNKKKEFLSGLLIRVL--RIPSLTPGAVTFGLNCVSHLVVVR 144
            A+  +L+L+L R+  P+L KK    S   + ++  +  S +   + + L+C++ L+  +
Sbjct: 170 AAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSAQASSGSTSVLRWVLSCLATLLRKQ 229

Query: 145 NAVNWSDVSNL--FGFILGFAIDSRPKVRR--QSHIC--LRDVLLKVQGTSLLPSASEGI 204
           +   W     L  +  +L F +  +PK+R+  Q  +C  L+      +       A+   
Sbjct: 230 DLEAWGYPVTLQVYHGLLSFTVHPKPKIRKAAQHGVCSVLKGSEFMFEKAPAHHPAAIST 289

Query: 205 TNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSMKYITNILKYYKTLLEL 264
                + +  +GGS        K A   L +L  L++ LP      + +  +    ++ L
Sbjct: 290 AKFCIQEIEKSGGS--------KEATTTLHMLTLLKDLLPCFPEGLVKSCSETLLRVMTL 349

Query: 265 HQPVVTKRITDSLNSLC-LHPTVDVSAEVLLDLLCSMALSFSTSETSADGLAFTARLLNV 324
              +VT     + +SL    P +   +  L   + +    +  SE     L    +++  
Sbjct: 350 SHVLVTACAMQAFHSLFHARPGLSTLSAELNAQIITALYDYVPSENDLQPLLAWLKVMEK 409

Query: 325 GMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKNLISSCIDEDLIRKGV 384
               +  +   + +  LP  F      +LS H + + AA  ++K ++  C+   +   G 
Sbjct: 410 AHINLVRLQWDLGLGHLPRFFGTAVTCLLSPHSQVLTAATQSLKEILKECVAPHMADIG- 469

Query: 385 DQIRTTENVEARRSGPT-VVEKLCAIIESLLDYHYTAVFDLAFQVVSAMFGKLGIFELLD 444
                  +V +  SGP   V K+   +E  L Y + A +    Q++   F   G  +   
Sbjct: 470 -------SVTSSASGPAQSVAKMFRAVEEGLTYKFHAAWSSVLQLLCVFFEACG-RQAHP 525

Query: 445 LIEFPLHSSFDMEISSYF 453
           ++   L S  D+ +S +F
Sbjct: 530 VMRKCLQSLCDLRLSPHF 525

[Close]

BLAST of Carg28177 vs. ExPASy TrEMBL
Match: A0A6J1HDA1 (RRP12-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461769 PE=3 SV=1)

HSP 1 Score: 865.5 bits (2235), Expect = 1.0e-247
Identity = 453/475 (95.37%), Postives = 455/475 (95.79%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV
Sbjct: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI
Sbjct: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL
Sbjct: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM
Sbjct: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE
Sbjct: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV
Sbjct: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
           SAMFGKLG                  + SSYFLKGALNSLANMQKLPDEDFPF +
Sbjct: 421 SAMFGKLG------------------KYSSYFLKGALNSLANMQKLPDEDFPFRK 457

[Close]

BLAST of Carg28177 vs. ExPASy TrEMBL
Match: A0A6J1JL60 (RRP12-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485586 PE=3 SV=1)

HSP 1 Score: 853.6 bits (2204), Expect = 4.0e-244
Identity = 446/475 (93.89%), Postives = 452/475 (95.16%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASFEFESN+DFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV
Sbjct: 1   MAMEGLEMEASFEFESNNDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI
Sbjct: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGA+TFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL
Sbjct: 121 PSLTPGAITFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM
Sbjct: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE
Sbjct: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIR+AQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRSAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LIS+CIDEDLIRKGVDQIRTTENVE RRSGPTVVEKLCAII SLLDYHYTAVFDLAFQVV
Sbjct: 361 LISACIDEDLIRKGVDQIRTTENVEPRRSGPTVVEKLCAIIGSLLDYHYTAVFDLAFQVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
           SAMF KLG                  + SSYFLKGALNSLANMQKLPDEDFPF +
Sbjct: 421 SAMFDKLG------------------KYSSYFLKGALNSLANMQKLPDEDFPFRK 457

[Close]

BLAST of Carg28177 vs. ExPASy TrEMBL
Match: A0A5A7UQJ2 (RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001350 PE=3 SV=1)

HSP 1 Score: 771.5 bits (1991), Expect = 2.0e-219
Identity = 402/475 (84.63%), Postives = 428/475 (90.11%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASF+FESNDDFC+ IL RF+NS+NE HQH+CAVIGAMAQELRDQSLPSTP+
Sbjct: 1   MAMEGLEMEASFDFESNDDFCNSILFRFNNSTNEEHQHLCAVIGAMAQELRDQSLPSTPL 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGA+CSSLDRISSEP+P PHLL+ALLTILSLLLPRISPPILNKKK+FLS LLIRVLR+
Sbjct: 61  AYFGATCSSLDRISSEPEPSPHLLEALLTILSLLLPRISPPILNKKKDFLSYLLIRVLRV 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGA TFGL CVSHLV+VRNA NWSDVSNLFGFI+GF IDSRPKVRRQSH CLRDVL
Sbjct: 121 PSLTPGAATFGLKCVSHLVIVRNAANWSDVSNLFGFIIGFVIDSRPKVRRQSHTCLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LK+QGT LLPSASEG+ NV EKSLLLAGGSNP ATE PKGAQEVLFILEALRECLPLMSM
Sbjct: 181 LKLQGTPLLPSASEGVANVFEKSLLLAGGSNPKATEGPKGAQEVLFILEALRECLPLMSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVT+RITDSLNSLCLHPTVDVSAEVLLDLLCSMA+SFST+E
Sbjct: 241 KYITNILKYYKTLLELHQPVVTRRITDSLNSLCLHPTVDVSAEVLLDLLCSMAVSFSTTE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGM+KVY VNRQICVVKLPVAFNALKDIML DHEEAIRAAQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMEKVYKVNRQICVVKLPVAFNALKDIMLCDHEEAIRAAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LI +CI+EDLIR+GV    TT N+EARRSGPTV+EKLCAIIESLLDYHYTAVFDLAFQVV
Sbjct: 361 LICACINEDLIREGV----TTGNMEARRSGPTVIEKLCAIIESLLDYHYTAVFDLAFQVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
           SAMF KLG                  + SSYFLKGAL SLA MQKL DEDFPF +
Sbjct: 421 SAMFDKLG------------------KYSSYFLKGALISLAKMQKLRDEDFPFRK 453

[Close]

BLAST of Carg28177 vs. ExPASy TrEMBL
Match: A0A1S3BQF1 (RRP12-like protein OS=Cucumis melo OX=3656 GN=LOC103492395 PE=3 SV=1)

HSP 1 Score: 771.5 bits (1991), Expect = 2.0e-219
Identity = 402/475 (84.63%), Postives = 428/475 (90.11%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASF+FESNDDFC+ IL RF+NS+NE HQH+CAVIGAMAQELRDQSLPSTP+
Sbjct: 1   MAMEGLEMEASFDFESNDDFCNSILFRFNNSTNEEHQHLCAVIGAMAQELRDQSLPSTPL 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGA+CSSLDRISSEP+P PHLL+ALLTILSLLLPRISPPILNKKK+FLS LLIRVLR+
Sbjct: 61  AYFGATCSSLDRISSEPEPSPHLLEALLTILSLLLPRISPPILNKKKDFLSYLLIRVLRV 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGA TFGL CVSHLV+VRNA NWSDVSNLFGFI+GF IDSRPKVRRQSH CLRDVL
Sbjct: 121 PSLTPGAATFGLKCVSHLVIVRNAANWSDVSNLFGFIIGFVIDSRPKVRRQSHTCLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LK+QGT LLPSASEG+ NV EKSLLLAGGSNP ATE PKGAQEVLFILEALRECLPLMSM
Sbjct: 181 LKLQGTPLLPSASEGVANVFEKSLLLAGGSNPKATEGPKGAQEVLFILEALRECLPLMSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVT+RITDSLNSLCLHPTVDVSAEVLLDLLCSMA+SFST+E
Sbjct: 241 KYITNILKYYKTLLELHQPVVTRRITDSLNSLCLHPTVDVSAEVLLDLLCSMAVSFSTTE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGM+KVY VNRQICVVKLPVAFNALKDIML DHEEAIRAAQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMEKVYKVNRQICVVKLPVAFNALKDIMLCDHEEAIRAAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LI +CI+EDLIR+GV    TT N+EARRSGPTV+EKLCAIIESLLDYHYTAVFDLAFQVV
Sbjct: 361 LICACINEDLIREGV----TTGNMEARRSGPTVIEKLCAIIESLLDYHYTAVFDLAFQVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
           SAMF KLG                  + SSYFLKGAL SLA MQKL DEDFPF +
Sbjct: 421 SAMFDKLG------------------KYSSYFLKGALISLAKMQKLRDEDFPFRK 453

[Close]

BLAST of Carg28177 vs. ExPASy TrEMBL
Match: A0A5D3CF81 (RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001310 PE=3 SV=1)

HSP 1 Score: 770.4 bits (1988), Expect = 4.5e-219
Identity = 402/475 (84.63%), Postives = 427/475 (89.89%), Query Frame = 0


Query: 1   MAMEGLEMEASFEFESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPV 60
           MAMEGLEMEASF+FESNDDFC+ IL RFSNS+NE HQH+CAVIGAMAQELRDQSLPSTP+
Sbjct: 1   MAMEGLEMEASFDFESNDDFCNSILFRFSNSTNEEHQHLCAVIGAMAQELRDQSLPSTPL 60

Query: 61  AYFGASCSSLDRISSEPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRI 120
           AYFGA+CSSLDRISSEP+P PHLL+ALLTILSLLLPRISPPILNKKK+FLS LLIRVLR+
Sbjct: 61  AYFGATCSSLDRISSEPEPSPHLLEALLTILSLLLPRISPPILNKKKDFLSYLLIRVLRV 120

Query: 121 PSLTPGAVTFGLNCVSHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVL 180
           PSLTPGA TFGL CVSHLV+VRNA NWSDVSNLFGFI+GF IDSRPKVRRQSH CLRDVL
Sbjct: 121 PSLTPGAATFGLKCVSHLVIVRNAANWSDVSNLFGFIIGFVIDSRPKVRRQSHTCLRDVL 180

Query: 181 LKVQGTSLLPSASEGITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSM 240
           LK+QGT LLPSASEG+ NV EKSLLLAGGSNP A E PKGAQEVLFILEALRECLPLMSM
Sbjct: 181 LKLQGTPLLPSASEGVANVFEKSLLLAGGSNPKAPEGPKGAQEVLFILEALRECLPLMSM 240

Query: 241 KYITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSE 300
           KYITNILKYYKTLLELHQPVVT+RITDSLNSLCLHPTVDVSAEVLLDLLCSMA+SFST+E
Sbjct: 241 KYITNILKYYKTLLELHQPVVTRRITDSLNSLCLHPTVDVSAEVLLDLLCSMAVSFSTTE 300

Query: 301 TSADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 360
           TSADGLAFTARLLNVGM+KVY VNRQICVVKLPVAFNALKDIML DHEEAIRAAQDAMKN
Sbjct: 301 TSADGLAFTARLLNVGMEKVYKVNRQICVVKLPVAFNALKDIMLCDHEEAIRAAQDAMKN 360

Query: 361 LISSCIDEDLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVV 420
           LI +CI+EDLIR+GV    TT N+EARRSGPTV+EKLCAIIESLLDYHYTAVFDLAFQVV
Sbjct: 361 LICACINEDLIREGV----TTGNMEARRSGPTVIEKLCAIIESLLDYHYTAVFDLAFQVV 420

Query: 421 SAMFGKLGIFELLDLIEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
           SAMF KLG                  + SSYFLKGAL SLA MQKL DEDFPF +
Sbjct: 421 SAMFDKLG------------------KYSSYFLKGALISLAKMQKLRDEDFPFRK 453

[Close]

BLAST of Carg28177 vs. TAIR 10
Match: AT2G34357.1 (ARM repeat superfamily protein )

HSP 1 Score: 371.3 bits (952), Expect = 1.2e-102
Identity = 206/460 (44.78%), Postives = 294/460 (63.91%), Query Frame = 0


Query: 17  NDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPVAYFGASCSSLDRI-SS 76
           ++DF + + SR S S   +H+H+CAVI  +++ L + +   TPVAYF  +C SLD + S+
Sbjct: 24  SEDFGEYMRSRLSQSKRPDHEHLCAVIEELSKTLAEDNHRRTPVAYFACTCRSLDSLFSA 83

Query: 77  EPDPPPHLLDALLTILSLLLPRISPPILNKKKEFLSGLLIRVLRIPSLTPGAVTFGLNCV 136
             +PP  ++   + ILSL+ P++S  +L K+      L++ VLR+ S TP  +  GL C+
Sbjct: 84  HAEPPVDVVQPHIVILSLVFPKVSAGVL-KRDGLALRLVLNVLRLKSATPECLISGLKCL 143

Query: 137 SHLVVVRNAVNWSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVLLKVQGTSLLPSASEG 196
            HL+    ++  ++ S+ +  +L F   S  KVR+ +  CLRDVL K  GT    S S  
Sbjct: 144 VHLLTTVESIMVNEGSDSYNILLNFVTHSDGKVRKLASSCLRDVLQKSHGTKAWQSVSGA 203

Query: 197 ITNVLEKSLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSMKYITNILKYYKTLLE 256
           IT + +  L LA  S   +TE  +GA++VL+IL  L+ECL LMS K+I  +++ +K L+ 
Sbjct: 204 ITEMFQNYLDLAHKSEVGSTEGARGAKQVLYILSTLKECLALMSKKHIATLIEGFKVLMI 263

Query: 257 LHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSETSADGLAFTARLLNV 316
           L  P +T+ + DSLN++CL+PT +V  E LL++L   A  FS  ETSAD + FTARLL V
Sbjct: 264 LRDPYITRPVIDSLNAVCLNPTSEVPVEALLEVLSLAAGLFSGHETSADAMTFTARLLKV 323

Query: 317 GMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKNLISSCIDEDLIRKGV 376
           GM + + +NR +CVVKLP  FN L DI+ S+HEEAI AA DA+K+LI SCIDE LIR+GV
Sbjct: 324 GMTRSFTLNRDLCVVKLPSVFNGLNDIIASEHEEAIFAATDALKSLIFSCIDESLIREGV 383

Query: 377 DQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVFDLAFQVVSAMFGKLGIFELLDL 436
           ++IR + N+  R+  PTV+EKLCA +ESLLDY Y AV+D+AFQVVSAMF KLG       
Sbjct: 384 NEIRNS-NLNVRKPSPTVIEKLCATVESLLDYKYHAVWDMAFQVVSAMFDKLG------- 443

Query: 437 IEFPLHSSFDMEISSYFLKGALNSLANMQKLPDEDFPFER 476
                      E S+YF++  L  L++MQ LPDE FP+ +
Sbjct: 444 -----------EHSAYFMRNTLQGLSDMQDLPDEGFPYRK 463

[Close]

BLAST of Carg28177 vs. TAIR 10
Match: AT4G23540.1 (ARM repeat superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 3.6e-27
Identity = 112/447 (25.06%), Postives = 211/447 (47.20%), Query Frame = 0


Query: 15  ESNDDFCDLILSRFSNSSNENHQHVCAVIGAMAQELRDQSLPSTPVAYFGASCSSLDRIS 74
           + N D    ++ R+  SS   H+H+ A   AM   L  +SLP +P A+F A+ SS+D  S
Sbjct: 18  DGNTDISQQLMDRYGKSSAAQHRHLVATAVAMRSILTSESLPPSPSAFFAAAISSVD--S 77

Query: 75  SEPDPPPHLLDALLTILSLLLPRI-SPPILNKKKEFLSGLLIRVLRIPSLTPGAVTF--G 134
           S  DP    + ALLT LS+++P + S  I          +L++ +       G  +   G
Sbjct: 78  STEDPV--AVSALLTFLSIVVPLVPSGEISATMARDAVAVLVKPIEEEGTKLGVASLRAG 137

Query: 135 LNCVSHLVVVRNAVN-WSDVSNLFGFILGFAIDSRPKVRRQSHICLRDVLLKVQGTSLLP 194
           + C+  L++    +N W  +   F  +L FAID RPKVRR +  CL  +   ++ ++++ 
Sbjct: 138 VKCIGTLLIGFCDLNDWESLQIGFALLLKFAIDKRPKVRRCAQECLEKLFGSLRSSTVIK 197

Query: 195 SASEGITNVLEK---------SLLLAGGSNPTATERPKGAQEVLFILEALRECLPLMSMK 254
            AS  +  +L++         S  +  GS   +T + + A E   +L  L   +P +S K
Sbjct: 198 EASNTVYALLKEYKPVLSDLSSTKIEEGSKVDSTLKSENA-EAAHVLNVLSATIPFLSAK 257

Query: 255 YITNILKYYKTLLELHQPVVTKRITDSLNSLCLHPTVDVSAEVLLDLLCSMALSFSTSET 314
             + +      L+      +T++I   ++++  +    +    +  L+ ++    S  + 
Sbjct: 258 VSSRVFSELCGLMASQFSPLTRQILKGIDTIFKNSEDKIVVPEIEGLVTTLTSYLSLHDK 317

Query: 315 S-ADGLAFTARLLNVGMQKVYNVNRQICVVKLPVAFNALKDIMLSDHEEAIRAAQDAMKN 374
           + AD +     LL   ++K Y+V   +C+ KLP+  ++L  ++ S  + A +A+   +K+
Sbjct: 318 NPADTIVHVTTLLKDALEKAYSVEPTLCLSKLPLVCSSLAGLLTSTDDIASKAS-TILKD 377

Query: 375 LISSCIDE-------DLIRKGVDQIRTTENVEARRSGPTVVEKLCAIIESLLDYHYTAVF 434
           LISS ID+        L  +  D + + +N+ A R   +V E +    + + + H   V 
Sbjct: 378 LISSHIDKKKLLTEGSLSNQDEDNVTSGDNINAARCVCSVFESVLNSCDGIPNEHILTVI 437

Query: 435 DLAFQ---VVSAMFGKLGIFELLDLIE 438
           +L  +    +S +  K  I +L DL++
Sbjct: 438 NLLIEKLGELSYILAKNIILKLADLMK 458

The following BLAST results are available for this feature:

BLAST of Carg28177 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023749.1	1.0e-265	100.00	RRP12-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961179.1	2.1e-247	95.37	RRP12-like protein [Cucurbita moschata]	[more]
KAG6590054.1	4.0e-246	94.95	RRP12-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7023720.1	4.0e-246	94.95	RRP12-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023515902.1	1.3e-244	94.32	RRP12-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg28177 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZKD5	2.8e-16	22.65	RRP12-like protein OS=Gallus gallus OX=9031 GN=RRP12 PE=2 SV=1	[more]
Q6P5B0	4.9e-13	21.22	RRP12-like protein OS=Mus musculus OX=10090 GN=Rrp12 PE=1 SV=1	[more]
Q5JTH9	1.1e-12	20.78	RRP12-like protein OS=Homo sapiens OX=9606 GN=RRP12 PE=1 SV=2	[more]

BLAST of Carg28177 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDA1	1.0e-247	95.37	RRP12-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461769 PE=3 SV=1	[more]
A0A6J1JL60	4.0e-244	93.89	RRP12-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485586 PE=3 SV=1	[more]
A0A5A7UQJ2	2.0e-219	84.63	RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G0...	[more]
A0A1S3BQF1	2.0e-219	84.63	RRP12-like protein OS=Cucumis melo OX=3656 GN=LOC103492395 PE=3 SV=1	[more]
A0A5D3CF81	4.5e-219	84.63	RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00...	[more]

BLAST of Carg28177 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34357.1	1.2e-102	44.78	ARM repeat superfamily protein	[more]
AT4G23540.1	3.6e-27	25.06	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 344..364
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 13..474
None	No IPR available	PANTHER	PTHR21576:SF2	RRP12-LIKE PROTEIN	coord: 13..474
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 22..468

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28177-RA	Carg28177-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus