Carg28160 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28160
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L18
Location	Carg_Chr05: 10012771 .. 10015105 (-)
RNA-Seq Expression	Carg28160
Synteny	Carg28160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATAAAAAGGGCCTTCAAAAACCCTAGAGCCATTTTCCTCCTCAGAGGTCGCCGTCGCCGTCGCAGAAGGGAAGGGTTTTCTCCACCATAAACGACCATGGTCGGTCTTTTTCTCTCTTCTCTCTTTACTTCATTTTTTCTGCGTACAATGGCGTAGATCAATGTCTTAGATGCGTTTTCCATTTATCTACAGGGGATAGATCTTGTAGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGGTTGGTTTTTCTAATCGTCATTGGTTCCGTTGTACTCACTTGCTCTTGCATTTTGTGGCTTTTTTCTTAGCGAATGGTGATTAATGCGTATGGTTATTTTAAATGAATTTGATTTAACTTGAGATATCGCGAATGGAGAATGGAGTTTCAAATCTAATTTTGTGAGCATCAATTTGGAACTTTATCCATTGTTATTTTTTGTATATGTTCTCTGCTCATATTTTGGTTTTTTGGTTCTACATTTTTTTTTAACCTAGTCGTGTTCCAAATGTGGTTGTTTTGATAAGAAAGTAGAGGAAATTTCATATGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGACCTTCCGTAGGTCTAGGAATGAACTAGTTCCACATTTATCTGAGCCCAGGTTTAGAGTATGGTTTTCTAGTTTAAATTTGAACAAGAAACCAGGAGATGTCATTAATCATTGGGCCATTAATAAACCTCGATTTCAAATTTTTAGTTTTGGAACCTTTTTTGCTCTCATGGGTCAATGTTTAGTTCTCATTCATTATATTTTGATTGGTATCCGACTATGTTCTCATCCGAAATGAAGAAATATGTGATACCCAGCTCATTATGAGACTTGTTTTAGGTCAAGGACTGGACTTAATCCACATATTTGTCTGATCTCAAATTATTCTACTTTTGAAGTTTCTTTCATTTCATCGTGAATTCGGAAGTAAGTGGATATGAAAAATATGGGTCATGCATTAATTTATGCTGTGTCCATTTACTATTCGAGCCTCTGGCTCCTTTATCTATACATATCTGGAAGGTAGTTTAGACTTTTAATGGTGGACTAAGGCTTCTATCCACTCTGATAGAGAGATGGGTTGTTGTTCCTTGTGATTCTTCATTTTTCAAACCATGCTAATACTGATTATACACGATGACTGACTGATCTTCAACTTGTCACTGAGGGAATTAGCCTAGAGTCATAAATTTATTATTTCCAGTAGTGGTGCGTGTTTGTTTGCATATCCAACCTATTTGTAATAACCTTTTTTTTTTTTCAAGCTTAGTAGTTTATTACCCTTATTTGGATTGCTTAAATGATTGATCTTTAATCTTGTTTACTGAATTCAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCATGAAGGGAAAGGTGTGTACTAATATTTATGCACTACATGTTCTTAATATTTTGATTTCAGCCTTTCAGGAGTGTGTTATTTTCCATTGTCTAAATTCTCTGGTGGTTAACATGGTATAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTGACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCCCTGAGGGCTCCTCTCGGTCAGAATACGGTACGATTACAACCCCATTTACTTTCTCTATCACACTCAAAATACATCCTCTGGTACTTATGAGCAACTGTTATCAAAGGCTCCTAACTGTCACATATGCCTATTTTATTTAGCTATGTGCTCCGTGTTTCATCAGTTCATGTTGAACAACATTCAGAAATGCTTAGATCCATACTTAATCTTCTGTTAATTTTGCTTTCAAAGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTCGGTCCAGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAATTTCATCCTATGTTCGACCCTTTTTGTGAGACAAAAAATTCATGTTTTGCTAGACTTGCAGAGATATTATTATGAGACTCAGTTATGTCTTAGTACAAGTTTTCATTATTATAAAACCTTAATCGTATTCAGTGAAAGATCTTGATTGAA

mRNA sequence

CTTCATAAAAAGGGCCTTCAAAAACCCTAGAGCCATTTTCCTCCTCAGAGGTCGCCGTCGCCGTCGCAGAAGGGAAGGGTTTTCTCCACCATAAACGACCATGGGGATAGATCTTGTAGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTGACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCCCTGAGGGCTCCTCTCGGTCAGAATACGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTCGGTCCAGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAATTTCATCCTATGTTCGACCCTTTTTGTGAGACAAAAAATTCATGTTTTGCTAGACTTGCAGAGATATTATTATGAGACTCAGTTATGTCTTAGTACAAGTTTTCATTATTATAAAACCTTAATCGTATTCAGTGAAAGATCTTGATTGAA

Coding sequence (CDS)

ATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTGACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCCCTGAGGGCTCCTCTCGGTCAGAATACGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTCGGTCCAGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAA

Protein sequence

MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

Homology

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BLAST of Carg28160 vs. NCBI nr
Match: KAG7030228.1 (60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.8 bits (673), Expect = 7.8e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 121 ERARGKRNSRGYRV 134

[Close]

BLAST of Carg28160 vs. NCBI nr
Match: XP_022999399.1 (60S ribosomal protein L18-2 [Cucurbita maxima])

HSP 1 Score: 263.8 bits (673), Expect = 7.8e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 54  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg28160 vs. NCBI nr
Match: XP_022965965.1 (60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.8 bits (673), Expect = 7.8e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 54  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg28160 vs. NCBI nr
Match: KAG6586240.1 (60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.5 bits (672), Expect = 1.0e-66
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIKFMKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 54  MSKVNKPPISLSRLIKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg28160 vs. NCBI nr
Match: KAG7021075.1 (60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.9 bits (668), Expect = 3.0e-66
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 54  MSKVNKPPISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg28160 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-62
Identity = 116/134 (86.57%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNK P+SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIE
Sbjct: 54  MSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           E+ARGKR SRG++V
Sbjct: 174 EKARGKRKSRGFKV 187

[Close]

BLAST of Carg28160 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-61
Identity = 115/134 (85.82%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNK P+SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIE
Sbjct: 54  MSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           E+ARGKR SRG++V
Sbjct: 174 EKARGKRKSRGFKV 187

[Close]

BLAST of Carg28160 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-58
Identity = 112/134 (83.58%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVN+PP+SLSRLIK+M+GKE KI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+
Sbjct: 51  MSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQ 110

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 111 KAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKF 170

Query: 121 ERARGKRNSRGYRV 135
           E+ARG+R SRG+RV
Sbjct: 171 EKARGRRKSRGFRV 183

[Close]

BLAST of Carg28160 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 208.0 bits (528), Expect = 6.7e-53
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 54  MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 113

Query: 61  KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 120
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 114 KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 173

Query: 121 FERARGKRNSRGYRV 135
            E ARG+R SRG++V
Sbjct: 174 IEIARGRRRSRGFKV 188

[Close]

BLAST of Carg28160 vs. ExPASy Swiss-Prot
Match: Q4PM04 (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.5e-49
Identity = 97/135 (71.85%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMK--GKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARAR 60
           MS++NKP ISL+R+ +FMK  G+E+ IAV+VGTVTDD+R+Y+VP L++ ALR TE ARAR
Sbjct: 53  MSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARAR 112

Query: 61  IEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGR 120
           I KAGGE LTFDQLA++AP G+ TVL++GP+NSREA +HFGPAPGVPHSHTKPYVRSKGR
Sbjct: 113 ILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGR 172

Query: 121 KFERARGKRNSRGYR 134
           KFERARG+R SR Y+
Sbjct: 173 KFERARGRRKSRRYK 187

[Close]

BLAST of Carg28160 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.8e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 54  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg28160 vs. ExPASy TrEMBL
Match: A0A6J1KGZ8 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.8e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 54  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg28160 vs. ExPASy TrEMBL
Match: A0A6J1FC57 (60S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 54  MSKVNKPPISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg28160 vs. ExPASy TrEMBL
Match: A0A6J1G525 (60S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIKF KGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 54  MSKVNKPPISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg28160 vs. ExPASy TrEMBL
Match: A0A5A7U3L4 (60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001430 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.3e-66
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNKPPISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIE
Sbjct: 54  MSKVNKPPISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg28160 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-63
Identity = 116/134 (86.57%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNK P+SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIE
Sbjct: 54  MSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           E+ARGKR SRG++V
Sbjct: 174 EKARGKRKSRGFKV 187

[Close]

BLAST of Carg28160 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-62
Identity = 115/134 (85.82%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNK P+SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIE
Sbjct: 54  MSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           E+ARGKR SRG++V
Sbjct: 174 EKARGKRKSRGFKV 187

[Close]

BLAST of Carg28160 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 4.7e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 61  KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 120
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 121 FERARGKRNSRGYRV 135
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Carg28160 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 4.7e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 60
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 61  KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 120
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 121 FERARGKRNSRGYRV 135
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of Carg28160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030228.1	7.8e-67	100.00	60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022999399.1	7.8e-67	100.00	60S ribosomal protein L18-2 [Cucurbita maxima]	[more]
XP_022965965.1	7.8e-67	100.00	60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal prote...	[more]
KAG6586240.1	1.0e-66	99.25	60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7021075.1	3.0e-66	99.25	60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg28160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42791	2.1e-62	86.57	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
Q940B0	1.8e-61	85.82	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
O65729	1.8e-58	83.58	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	6.7e-53	77.04	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q4PM04	4.5e-49	71.85	60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1	[more]

BLAST of Carg28160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQ85	3.8e-67	100.00	60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=...	[more]
A0A6J1KGZ8	3.8e-67	100.00	60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=...	[more]
A0A6J1FC57	1.4e-66	99.25	60S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 P...	[more]
A0A6J1G525	1.9e-66	99.25	60S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 S...	[more]
A0A5A7U3L4	9.3e-66	97.76	60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Carg28160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05590.1	1.5e-63	86.57	ribosomal protein L18	[more]
AT5G27850.1	1.2e-62	85.82	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.1	4.7e-54	77.04	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	4.7e-54	77.04	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 1..134 e-value: 1.5E-72 score: 245.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..134
None	No IPR available	PANTHER	PTHR10934:SF19	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 1..133
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 1..134 e-value: 1.8E-69 score: 232.9
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 1..133
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28160-RA	Carg28160-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome