Carg28132 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28132
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr13: 4598603 .. 4599454 (+)
RNA-Seq Expression	Carg28132
Synteny	Carg28132

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAACTTTGACAACAGAGAGAGAAGAGAGAGAGAGAAGCGAAAGAGCGATTTGGGTTTGGGCATTAAGCATAAGCCGAAAGATAGGGCGATTCAAGGAAGAACGGCAGGCCACCGTCCGCCACTTGGACGGCCGGAGATATCAGGGACTCCGCTGCTCTCACTCTCCACAAATCTCCTCTTCTTACTTCACCCTTCTCTCAACCGATACCCTATCACAGGTGAATTTCTCCCTCTTTTGTCTCTTCTCTTCAATCGACGTATTTCAACTATCAATGAAATCGAATTCAATTCAAGGAGCTTCACTGTTTTCTTCATTTACTACGTTCTTTCTCCTTCAATTTTTCTTTGATGTCCTTAGTTTACTCTTTGAAACTTCAGTTCTACTAACTTCTTCAACAATTTCTTTTCAATTTAACATCAGCATTGAGTTTCTACTCTCTGATCAATGTCTAAGTTCTTCATTTTTATTGCCCTAGTTGAACGAAATTGTTGGAACTTTAACTCTCTCCCTTCTCCTTGTTTATGCTCCCTACCGCAAGATTTTGTGTTGTGCTCAGTTCCAATTTTGCATACACTATTAGATCTGTGACTGTTATTAACTTGTGACTTTTGCGATGCCATTTTTATTTTTGATTATTTTGTTTATTTCAGTCGCGTGTTGTCTGATACAGTTAGACTTTGAATGAAGTTAAAAAAAAAAATTGAAAGAGTTGATGATTCATGTTTTCTTCTTTCAGTGAAAATATGTGCTGTTAGGTCTGTGGACCATTTGAAGTTCGATGCTGATGTCACATTGTGCTTCAATTACAATAAACCTCAGCCTAAGAGCATTTATTTAATCTGTAAGTGA

mRNA sequence

GAAAACTTTGACAACAGAGAGAGAAGAGAGAGAGAGAAGCGAAAGAGCGATTTGGGTTTGGGCATTAAGCATAAGCCGAAAGATAGGGCGATTCAAGGAAGAACGGCAGGCCACCGTCCGCCACTTGGACGGCCGGAGATATCAGGGACTCCGCTGCTCTCACTCTCCACAAATCTCCTCTTCTTACTTCACCCTTCTCTCAACCGATACCCTATCACAGTGAAAATATGTGCTGTTAGGTCTGTGGACCATTTGAAGTTCGATGCTGATGTCACATTGTGCTTCAATTACAATAAACCTCAGCCTAAGAGCATTTATTTAATCTGTAAGTGA

Coding sequence (CDS)

GAAAACTTTGACAACAGAGAGAGAAGAGAGAGAGAGAAGCGAAAGAGCGATTTGGGTTTGGGCATTAAGCATAAGCCGAAAGATAGGGCGATTCAAGGAAGAACGGCAGGCCACCGTCCGCCACTTGGACGGCCGGAGATATCAGGGACTCCGCTGCTCTCACTCTCCACAAATCTCCTCTTCTTACTTCACCCTTCTCTCAACCGATACCCTATCACAGTGAAAATATGTGCTGTTAGGTCTGTGGACCATTTGAAGTTCGATGCTGATGTCACATTGTGCTTCAATTACAATAAACCTCAGCCTAAGAGCATTTATTTAATCTGTAAGTGA

Protein sequence

ENFDNRERREREKRKSDLGLGIKHKPKDRAIQGRTAGHRPPLGRPEISGTPLLSLSTNLLFLLHPSLNRYPITVKICAVRSVDHLKFDADVTLCFNYNKPQPKSIYLICK

Homology

[Close]

BLAST of Carg28132 vs. NCBI nr
Match: KAG7019342.1 (hypothetical protein SDJN02_18302, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.6 bits (571), Expect = 4.3e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   ENFDNRERREREKRKSDLGLGIKHKPKDRAIQGRTAGHRPPLGRPEISGTPLLSLSTNLL 60
           ENFDNRERREREKRKSDLGLGIKHKPKDRAIQGRTAGHRPPLGRPEISGTPLLSLSTNLL
Sbjct: 1   ENFDNRERREREKRKSDLGLGIKHKPKDRAIQGRTAGHRPPLGRPEISGTPLLSLSTNLL 60

Query: 61  FLLHPSLNRYPITVKICAVRSVDHLKFDADVTLCFNYNKPQPKSIYLICK 111
           FLLHPSLNRYPITVKICAVRSVDHLKFDADVTLCFNYNKPQPKSIYLICK
Sbjct: 61  FLLHPSLNRYPITVKICAVRSVDHLKFDADVTLCFNYNKPQPKSIYLICK 110

The following BLAST results are available for this feature:

BLAST of Carg28132 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019342.1	4.3e-55	100.00	hypothetical protein SDJN02_18302, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg28132 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg28132 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg28132 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28132-RA	Carg28132-RA	mRNA