Carg28101 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28101
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncucumber peeling cupredoxin-like
LocationCarg_Chr18: 6187228 .. 6187973 (-)
RNA-Seq ExpressionCarg28101
SyntenyCarg28101
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACTCCGACCAATAACCTAGCAGCGCTTTTGACGGCGGCGTTTATTATCACCACCGCGGCGCCCTTTGCCAGAGCGGAGACGCACCAAGTCGTCGGCGGCGAGGTAGGGGATGGGACGTGACTCGAACATTTGCGTCTTGGTCGCCGTTTCGAATATTCAGAGTCGGAGATTAAGATCTGTAAGGATCCATTCGTTTTTTCCTTTTTTGTTTTGTTTTTAATGCGGTTTTTGGGGTGAGAAATTTGTTTGGGATTTTCCCGGTTCATCCGATGGAAATTCGGAACTTGGGTTTTATTAAGAGTAAAAATAAAAAAATAAAAAAAATAAAAAATAAAAAAAGTAATGTTGGGGTAAGGTTCGCTGTACTCTGTGGCACACGGTACGTGGTGGAGCTTGGAAAAGGAAGGAGGAATACAGAGCGTGCGATGTTAAGCAGGTCAGTCAAGGAGTATAGGGACGGCATGGATATCGTGGCCTTAAACGGAGAAGGAATCCGCTACTCGCGAGTAGCAGAGCAGAGAAGTGCAAGAAGGGCCTCAAACTGCAGGTGCATGTGGAGGCCCCAACAACAGAAGGCGGAGACGACAGGAGTTGAATCGAGGGACGACATGTCGGAGGGGGATGGTGAGTCAGCAGCAGTTCCACCATCCCCTTCCACGTCTTCAACGCCTTTCGCCATTTCTTATGTCACTCTCTCCCTTTTGCTGGCTGGCCTTGCCTTTACTTATTGGATCAGCTAA

mRNA sequence

ATGCCCACTCCGACCAATAACCTAGCAGCGCTTTTGACGGCGGCGTTTATTATCACCACCGCGGCGCCCTTTGCCAGAGCGGAGACGCACCAAGTCGTCGGCGGCGAGGTAGGGGATGGGACGTTCGCTGTACTCTGTGGCACACGGTACGTGGTGGAGCTTGGAAAAGGAAGGAGGAATACAGAGCGTGCGATGTTAAGCAGGTCAGTCAAGGAGTATAGGGACGGCATGGATATCGTGGCCTTAAACGGAGAAGGAATCCGCTACTCGCGAGTAGCAGAGCAGAGAAGTGCAAGAAGGGCCTCAAACTGCAGGTGCATGTGGAGGCCCCAACAACAGAAGGCGGAGACGACAGGAGTTGAATCGAGGGACGACATGTCGGAGGGGGATGGTGAGTCAGCAGCAGTTCCACCATCCCCTTCCACGTCTTCAACGCCTTTCGCCATTTCTTATGTCACTCTCTCCCTTTTGCTGGCTGGCCTTGCCTTTACTTATTGGATCAGCTAA

Coding sequence (CDS)

ATGCCCACTCCGACCAATAACCTAGCAGCGCTTTTGACGGCGGCGTTTATTATCACCACCGCGGCGCCCTTTGCCAGAGCGGAGACGCACCAAGTCGTCGGCGGCGAGGTAGGGGATGGGACGTTCGCTGTACTCTGTGGCACACGGTACGTGGTGGAGCTTGGAAAAGGAAGGAGGAATACAGAGCGTGCGATGTTAAGCAGGTCAGTCAAGGAGTATAGGGACGGCATGGATATCGTGGCCTTAAACGGAGAAGGAATCCGCTACTCGCGAGTAGCAGAGCAGAGAAGTGCAAGAAGGGCCTCAAACTGCAGGTGCATGTGGAGGCCCCAACAACAGAAGGCGGAGACGACAGGAGTTGAATCGAGGGACGACATGTCGGAGGGGGATGGTGAGTCAGCAGCAGTTCCACCATCCCCTTCCACGTCTTCAACGCCTTTCGCCATTTCTTATGTCACTCTCTCCCTTTTGCTGGCTGGCCTTGCCTTTACTTATTGGATCAGCTAA

Protein sequence

MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGEVGDGTFAVLCGTRYVVELGKGRRNTERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARRASNCRCMWRPQQQKAETTGVESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAGLAFTYWIS
Homology
BLAST of Carg28101 vs. NCBI nr
Match: KAG7012659.1 (hypothetical protein SDJN02_25412, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.8 bits (826), Expect = 1.8e-84
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGEVGDGTFAVLCGTRYVVELGKGRRN 60
           MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGEVGDGTFAVLCGTRYVVELGKGRRN
Sbjct: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGEVGDGTFAVLCGTRYVVELGKGRRN 60

Query: 61  TERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARRASNCRCMWRPQQQKAETTGV 120
           TERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARRASNCRCMWRPQQQKAETTGV
Sbjct: 61  TERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARRASNCRCMWRPQQQKAETTGV 120

Query: 121 ESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAGLAFTYWIS 169
           ESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAGLAFTYWIS
Sbjct: 121 ESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAGLAFTYWIS 168

BLAST of Carg28101 vs. NCBI nr
Match: KAG7012655.1 (Uclacyanin 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.9 bits (494), Expect = 5.6e-46
Identity = 123/189 (65.08%), Postives = 132/189 (69.84%), Query Frame = 0

Query: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGE-------------------VGDGT 60
           MPTPTNNLAALLTAAFIITTAAPFARAETH VVGG+                   VGD  
Sbjct: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKI 60

Query: 61  -FAVLCGTRYVVELGKGRRNTERAM-LSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSAR 120
            FA       VVEL   R+   RA  +SR +KEYRDG+DIVALNGEGIRY   +     +
Sbjct: 61  WFAYSVAHGNVVEL--ERKEEYRACDVSRFIKEYRDGIDIVALNGEGIRYFASSRAERCK 120

Query: 121 RASNCRCMWRPQQQKAETTGVESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLA 169
           +    +     QQQKAETTGV SRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLA
Sbjct: 121 KGLKLQVHVEAQQQKAETTGVGSRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLA 180

BLAST of Carg28101 vs. NCBI nr
Match: KAG6573549.1 (Uclacyanin 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-44
Identity = 118/188 (62.77%), Postives = 130/188 (69.15%), Query Frame = 0

Query: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGE-------------------VGDGT 60
           MPTPTNNLAALLTAAFIITTAAPFA AETH VVGG+                   VGD  
Sbjct: 1   MPTPTNNLAALLTAAFIITTAAPFAGAETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKI 60

Query: 61  -FAVLCGTRYVVELGKGRRNTERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARR 120
            FA       VVEL + +   +   +SR ++EYRDG+DIVALNGEGIRY   +     ++
Sbjct: 61  WFAYSVAHGNVVELER-KEEYKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCKK 120

Query: 121 ASNCRCMWRPQQQKAETTGVESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 169
               +     QQQKAETTGV SRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG
Sbjct: 121 GLKLQVHVEAQQQKAETTGVGSRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 180

BLAST of Carg28101 vs. NCBI nr
Match: XP_022931815.1 (cucumber peeling cupredoxin-like [Cucurbita moschata] >XP_022931816.1 cucumber peeling cupredoxin-like [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-44
Identity = 117/188 (62.23%), Postives = 130/188 (69.15%), Query Frame = 0

Query: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGE-------------------VGDGT 60
           MPTPTNNLAA+LTAAFIITTAAPFA AETH VVGG+                   VGD  
Sbjct: 1   MPTPTNNLAAVLTAAFIITTAAPFAGAETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKI 60

Query: 61  -FAVLCGTRYVVELGKGRRNTERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARR 120
            FA       VVEL + +   +   +SR ++EYRDG+DIVALNGEGIRY   +     ++
Sbjct: 61  WFAYSVAHGNVVELER-KEEYKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCKK 120

Query: 121 ASNCRCMWRPQQQKAETTGVESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 169
               +     QQQKAETTGV SRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG
Sbjct: 121 GLKLQVHVEAQQQKAETTGVGSRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 180

BLAST of Carg28101 vs. NCBI nr
Match: XP_023542417.1 (cucumber peeling cupredoxin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187.6 bits (475), Expect = 8.9e-44
Identity = 115/188 (61.17%), Postives = 129/188 (68.62%), Query Frame = 0

Query: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGE-------------------VGDGT 60
           MPTPTNNLAALLTAAFI+TTAAPFA AETH VVGG+                   VGD  
Sbjct: 1   MPTPTNNLAALLTAAFIVTTAAPFAGAETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKI 60

Query: 61  -FAVLCGTRYVVELGKGRRNTERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARR 120
            FA       VVEL + +   +   +SR ++EYRDG+DIVALNGEGIRY   +     ++
Sbjct: 61  WFAYSVAHGNVVELAR-KEEYKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCKK 120

Query: 121 ASNCRCMWRPQQQKAETTGVESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 169
               +     QQQK ETTGV SR+DMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG
Sbjct: 121 GLKLQVHVEAQQQKGETTGVGSRNDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 180

BLAST of Carg28101 vs. ExPASy TrEMBL
Match: A0A6J1F0H5 (cucumber peeling cupredoxin-like OS=Cucurbita moschata OX=3662 GN=LOC111438108 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.1e-44
Identity = 117/188 (62.23%), Postives = 130/188 (69.15%), Query Frame = 0

Query: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGE-------------------VGDGT 60
           MPTPTNNLAA+LTAAFIITTAAPFA AETH VVGG+                   VGD  
Sbjct: 1   MPTPTNNLAAVLTAAFIITTAAPFAGAETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKI 60

Query: 61  -FAVLCGTRYVVELGKGRRNTERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARR 120
            FA       VVEL + +   +   +SR ++EYRDG+DIVALNGEGIRY   +     ++
Sbjct: 61  WFAYSVAHGNVVELER-KEEYKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCKK 120

Query: 121 ASNCRCMWRPQQQKAETTGVESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 169
               +     QQQKAETTGV SRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG
Sbjct: 121 GLKLQVHVEAQQQKAETTGVGSRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 180

BLAST of Carg28101 vs. ExPASy TrEMBL
Match: A0A6J1ICE5 (cucumber peeling cupredoxin-like OS=Cucurbita maxima OX=3661 GN=LOC111472427 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 114/188 (60.64%), Postives = 128/188 (68.09%), Query Frame = 0

Query: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGE-------------------VGDGT 60
           MPTP NNLAALLTAAFI+TTAAPFA AETH VVGG+                   VGD  
Sbjct: 1   MPTP-NNLAALLTAAFIVTTAAPFAGAETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKI 60

Query: 61  -FAVLCGTRYVVELGKGRRNTERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARR 120
            FA       VVEL + +   +   +SR ++EYRDG+DIVALNGEGIRY   +     R+
Sbjct: 61  WFAYSVAHGNVVELER-KEEFKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCRK 120

Query: 121 ASNCRCMWRPQQQKAETTGVESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 169
               +     QQQKA TTGV SR+DMSEGDGESAAVPPSPSTSSTPFAISY+TLSLLLAG
Sbjct: 121 GLKLQVHVEAQQQKAGTTGVGSRNDMSEGDGESAAVPPSPSTSSTPFAISYLTLSLLLAG 180

BLAST of Carg28101 vs. ExPASy TrEMBL
Match: A0A6J1IFV5 (cucumber peeling cupredoxin-like OS=Cucurbita maxima OX=3661 GN=LOC111472426 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 114/188 (60.64%), Postives = 127/188 (67.55%), Query Frame = 0

Query: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGE-------------------VGDGT 60
           MPTP NNLAALLTAAFI+TTAAPFA AETH VVGG+                   VGD  
Sbjct: 1   MPTP-NNLAALLTAAFIVTTAAPFAGAETHHVVGGDRGWDVDSNIASWSAGRIFRVGDKI 60

Query: 61  -FAVLCGTRYVVELGKGRRNTERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARR 120
            FA       VVEL + +   +   +SR ++EYRDG+DIVALNGEGIRY   +     R+
Sbjct: 61  WFAYSVAHGNVVELER-KEEFKACDVSRFIREYRDGIDIVALNGEGIRYFASSRAERCRK 120

Query: 121 ASNCRCMWRPQQQKAETTGVESRDDMSEGDGESAAVPPSPSTSSTPFAISYVTLSLLLAG 169
               +     QQQKA TTGV SRDDMSEG GESAAVPPSPSTSSTPFAISY+TLSLLLAG
Sbjct: 121 GLKLQVHVEAQQQKAGTTGVGSRDDMSEGGGESAAVPPSPSTSSTPFAISYLTLSLLLAG 180

BLAST of Carg28101 vs. ExPASy TrEMBL
Match: A0A6J1CNA9 (mavicyanin-like OS=Momordica charantia OX=3673 GN=LOC111012673 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 80/184 (43.48%), Postives = 99/184 (53.80%), Query Frame = 0

Query: 8   LAALLTAAFIITTAA-PFARAETHQVVGGE-------------------VGDGT-FAVLC 67
           L A+LTAAF + +A  P A AETH VVGG+                   VGD   FA   
Sbjct: 7   LLAVLTAAFFVNSATPPGAGAETHHVVGGDRGWDVDSDISSWSAGRSFRVGDKIWFAYSA 66

Query: 68  GTRYVVELGKGRRNTERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARRASNCRC 127
               VVEL + +   E   +S   + Y DG+DIVALNGEGIRY   +EQ S ++      
Sbjct: 67  AHGNVVEL-RSQEEYEACDVSNFTRMYTDGIDIVALNGEGIRYFASSEQESCKKGLKLHV 126

Query: 128 MWRPQ-QQKAETTGVESRDDMSEGDGESAAVPPSPSTSSTPFA-ISYVTLSLLLAGLAFT 169
             + Q QQ +ETT  E  +D+S  D  SAA P +PSTSS P   ISY+TL+L L  L  T
Sbjct: 127 QVQAQAQQNSETTEDERTNDVSVAD--SAAAPSTPSTSSPPHTPISYITLTLFLFMLGLT 186

BLAST of Carg28101 vs. ExPASy TrEMBL
Match: A0A6J1KN85 (uclacyanin 1-like OS=Cucurbita maxima OX=3661 GN=LOC111495690 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-15
Identity = 76/197 (38.58%), Postives = 103/197 (52.28%), Query Frame = 0

Query: 1   MPTPTNNLAALLTAAFIITTAAPFARAETHQVVGGE-------------------VGDGT 60
           M      L A+ TAAF+ TT    A A+TH +VGG+                   VGD  
Sbjct: 1   MAAAMKKLVAVFTAAFVATTV---AGAQTHHIVGGDRGWDVDSNIDSWSAGRKFRVGDKI 60

Query: 61  -FAVLCGTRYVVELGKGRRNTERAMLSRSVKEYRDGMDIVALNGEGIRYSRVAEQRSARR 120
            FA       +VEL + ++  E   +S  ++ Y DG+DIV LNGEGIRY   ++Q S ++
Sbjct: 61  WFAYSMAQGKIVEL-QSKKEYEACDVSNFIRMYTDGIDIVPLNGEGIRYFASSKQESCKK 120

Query: 121 ASNCRCMWRPQ-------QQKAE--TTGVESRDDMSEGDGESAAVPPSPSTSSTPF-AIS 168
                     Q       QQKA+  TTGVE+ +D+S  DG+SAA PP+PS SS P  A+S
Sbjct: 121 GLKLHVQVEAQAQNQDQTQQKAQMKTTGVETTNDVS--DGDSAAAPPTPSASSPPLTAMS 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7012659.11.8e-84100.00hypothetical protein SDJN02_25412, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7012655.15.6e-4665.08Uclacyanin 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6573549.11.1e-4462.77Uclacyanin 1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022931815.12.3e-4462.23cucumber peeling cupredoxin-like [Cucurbita moschata] >XP_022931816.1 cucumber p... [more]
XP_023542417.18.9e-4461.17cucumber peeling cupredoxin-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F0H51.1e-4462.23cucumber peeling cupredoxin-like OS=Cucurbita moschata OX=3662 GN=LOC111438108 P... [more]
A0A6J1ICE51.2e-4160.64cucumber peeling cupredoxin-like OS=Cucurbita maxima OX=3661 GN=LOC111472427 PE=... [more]
A0A6J1IFV52.0e-4160.64cucumber peeling cupredoxin-like OS=Cucurbita maxima OX=3661 GN=LOC111472426 PE=... [more]
A0A6J1CNA91.3e-1643.48mavicyanin-like OS=Momordica charantia OX=3673 GN=LOC111012673 PE=4 SV=1[more]
A0A6J1KN855.5e-1538.58uclacyanin 1-like OS=Cucurbita maxima OX=3661 GN=LOC111495690 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28101-RACarg28101-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane