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Carg28082 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAGAACAAACAGATTCGCATTGCGTTACTTGATTCCGTCGTCTTTTCTCAAACCTCCTCCGTGTTCGTGTTGGACTCTTTCCATTTCGTTACTTGCTTCGATTTCCAGCAAACGACATTAGCAATCCATTTTCGCTATCATGGAGGTTTAATCGGGAGAAGTTTGTTTTTCCAATCTGTACGTCGAGATTCAATGTCGCTGAATATGAATTAGTTAGTGAGTCGATTGCAACGGACGATCTGATTTTTCGAATCCACTGCTCGAAGATCACAAAGGTGAGCAAACTTGCGCGTTTATTTTTTCATTTTTGATTGATCGATTGTTCGGCGTCTTGAAATTTGTCAAATTCTATTTCGATTTGGATTTTACAAATAGTAATTTTTCATCCGTATTGATTTGTGTTGGAAATTTGGCTCAATATATGTAGCAGGTGTGTTTCTAATCGTATCCTGCACGTATGTATAAACTTTTTTTTCTTTAATCATAATCCTTCGTTGAGTACTTCGATTGTGTTGGGAAGATAACAGGAGCTATGGATCGGATTAAACCAGTATACACTCGACAGAAAAAGTAACGCTGGCACCCCACTGGGACCAGCGTCGCCATTGCGTACAACCGTACAAATGGCACACCATGCGCGATCAGGTTCGGCTGGCGTGGCAAATTCGAAGAGAGAGGACAGAACAATGCAACGAAAGCTGCAGAGCGCAAAGGCTTGCAAAAAGTGAATGGCAAGTTCAGCTGATGACGAGGATGAAGAAGATGATCTTTCTTATGATTTGAGTTTGGCGAGTGGCCACAGGGGGCATTGGATTAGCAGGTGGAAGATCAGTTCAGATCCCGCTCTCCTATGGTAAAAATCGTTTTAGTTGCAATATATTGTTCAGGTTTGCATGACATTGTTGTCTAAGTCTGTTTCTTTTATATGCATTCATGTGTGTAGACAGTTCAGTGGCATGAAGGTTAGTGCTGTTTCTGCTCGCTTCTTACTATTTGAACTTTCTAGGTTACAGCTTGTCGTTTACATCCATTTTTCTTATATCTTGACTGAGAACATGTTAGCTATTAGCTTCGGCTTTCTCCTTTTCAAATAAAAGCTATTTTCCCTTGCGGTTGCAATGGTGAAAGCATCTCAGATATGGAGATCTTTTAGTTTGATAACATAAGCCGTGAGAACGAAAAAGTGCATCCGTTAGGAATCACGACTCTCAATAATGGTATGATATTGTCCACTTTGAGCATAAGCTATCATGACTTTGCTTTGGGCTTCCCCAAAAGGTTTCACATACACTTACGATCTTCCACTAAAATTAACCAAATTGGGACTCACTCCCAATAATCCTCAACGCCATCTAATTCTTTATGCAAATTAGTATGCGATTCTTTTTTGTCCAAGTTGGAGCCATATGAGACAATTTAAATGTTAAATGGACATGTTATTAGTTGAACTAAAAGAATCACCAAACTCCAAATTGAATAAAGATGGATTGTCTCATCTTAAATATGATCTCATTCTTATTTTTGTAGCATTTTTGATTAGTCATAAACCCATTATGAATTAATATTTTAGTTTTAAACGTCAAACACAATCTAGAGATCTTCTTGAGCAGTTAGATTGTGCAGTTAGCCTTTGATTTTCTTTTACGTTGATTGCTCATTTGCATCATTATATAATCATTATAGCCATCTGTGTTATACTACTAATAAATGTTATTTTTCATGTTTTACTTGCAAGTCTAATACGTGCTTAACTTTTAAATATAGCCGTCTGCTCGTACTGTTCAGAACCTAACTTCTCTGGACATGTGGGATTGGGGGTCGACCATCTCAAAACTGTAAATCATATGGAGCAACCAATGTCGGCTCGTACAGCGCTAGGACAACGACCATCTCGTTCTGATACTAATGCTGAACAAGCACCATTAACTCGCACTTCAACGCTAGTTCGACCATCCCAGCTTCCCAACTCCGTAGAGCAACCTACATGCTACTCGTACAGCATCAGTTAG AAAGAACAAACAGATTCGCATTGCGTTACTTGATTCCGTCGTCTTTTCTCAAACCTCCTCCGTGTTCGTGTTGGACTCTTTCCATTTCGTTACTTGCTTCGATTTCCAGCAAACGACATTAGCAATCCATTTTCGCTATCATGGAGGTTTAATCGGGAGAAGTTTGTTTTTCCAATCTGTACGTCGAGATTCAATGTCGCTGAATATGAATTAGTTAGTGAGTCGATTGCAACGGACGATCTGATTTTTCGAATCCACTGCTCGAAGATCACAAAGGAGCTATGGATCGGATTAAACCAGTATACACTCGACAGAAAAAGTAACGCTGGCACCCCACTGGGACCAGCGTCGCCATTGCGTACAACCGTACAAATGGCACACCATGCGCGATCAGGGGGCATTGGATTAGCAGGTGGAAGATCAGTTCAGATCCCGCTCTCCTATGCCGTCTGCTCGTACTGTTCAGAACCTAACTTCTCTGGACATGTGGGATTGGGGGTCGACCATCTCAAAACTGTAAATCATATGGAGCAACCAATGTCGGCTCGTACAGCGCTAGGACAACGACCATCTCGTTCTGATACTAATGCTGAACAAGCACCATTAACTCGCACTTCAACGCTAGTTCGACCATCCCAGCTTCCCAACTCCGTAGAGCAACCTACATGCTACTCGTACAGCATCAGTTAG ATGGCACACCATGCGCGATCAGGGGGCATTGGATTAGCAGGTGGAAGATCAGTTCAGATCCCGCTCTCCTATGCCGTCTGCTCGTACTGTTCAGAACCTAACTTCTCTGGACATGTGGGATTGGGGGTCGACCATCTCAAAACTGTAAATCATATGGAGCAACCAATGTCGGCTCGTACAGCGCTAGGACAACGACCATCTCGTTCTGATACTAATGCTGAACAAGCACCATTAACTCGCACTTCAACGCTAGTTCGACCATCCCAGCTTCCCAACTCCGTAGAGCAACCTACATGCTACTCGTACAGCATCAGTTAG MAHHARSGGIGLAGGRSVQIPLSYAVCSYCSEPNFSGHVGLGVDHLKTVNHMEQPMSARTALGQRPSRSDTNAEQAPLTRTSTLVRPSQLPNSVEQPTCYSYSIS Homology
BLAST of Carg28082 vs. NCBI nr
Match: KAG7021170.1 (hypothetical protein SDJN02_17858 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 214.5 bits (545), Expect = 4.3e-52 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of Carg28082 vs. NCBI nr
Match: XP_023537930.1 (coiled-coil domain-containing protein SCD2 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 125.6 bits (314), Expect = 2.6e-25 Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0
BLAST of Carg28082 vs. NCBI nr
Match: XP_023537927.1 (coiled-coil domain-containing protein SCD2 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537928.1 coiled-coil domain-containing protein SCD2 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 125.6 bits (314), Expect = 2.6e-25 Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0
BLAST of Carg28082 vs. NCBI nr
Match: XP_023537931.1 (coiled-coil domain-containing protein SCD2 isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 125.6 bits (314), Expect = 2.6e-25 Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0
BLAST of Carg28082 vs. NCBI nr
Match: KAG7021132.1 (Coiled-coil domain-containing protein SCD2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 124.8 bits (312), Expect = 4.4e-25 Identity = 68/92 (73.91%), Postives = 72/92 (78.26%), Query Frame = 0
BLAST of Carg28082 vs. ExPASy TrEMBL
Match: A0A6J1FI09 (coiled-coil domain-containing protein SCD2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444316 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25 Identity = 68/92 (73.91%), Postives = 72/92 (78.26%), Query Frame = 0
BLAST of Carg28082 vs. ExPASy TrEMBL
Match: A0A6J1FIV2 (coiled-coil domain-containing protein SCD2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444316 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25 Identity = 68/92 (73.91%), Postives = 72/92 (78.26%), Query Frame = 0
BLAST of Carg28082 vs. ExPASy TrEMBL
Match: A0A6J1HKU2 (coiled-coil domain-containing protein SCD2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465468 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23 Identity = 65/91 (71.43%), Postives = 68/91 (74.73%), Query Frame = 0
BLAST of Carg28082 vs. ExPASy TrEMBL
Match: A0A6J1HPI8 (coiled-coil domain-containing protein SCD2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465468 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 5.9e-23 Identity = 65/91 (71.43%), Postives = 68/91 (74.73%), Query Frame = 0
BLAST of Carg28082 vs. ExPASy TrEMBL
Match: A0A5D3D4B6 (Coiled-coil domain-containing protein SCD2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001050 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.3e-11 Identity = 49/100 (49.00%), Postives = 59/100 (59.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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