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Carg28080 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCTCTCTCTCTCTACTATGCTTTCACTGATCAGTTCATCAGACCACCAAACAGATCATTCATTCACATCTTCCTCTCTCTCTCTCTCTGGAAATTTCCAGGGTTTTTCTCTCCTAATCTTTGGACGCTCTTTCAATTTCAATTCTCCGGTGCGTTTTATTTATTCAAAGCGGAAGTTTCACGGCAAAGTTTTCGTTCATCTCCACTCGCTCTTTGTTCTCTGTCTTCCGGAACAGGTGAGTTGTTGAATTCTTTTGTGCATTTTTTTGGAAGAATGGAAGAATCGTCTTGTTTGAATGTTTTGTTGTGCTTGCTGTTCGAAATTTCAGTTAGCATGTTGAGAACGTAGTCTGTGCGTGTGTGTTAGATGAATTTTTGCTGGTTTCTTGGCTGTTGGAGTTTTTTTTTGGTTTTGGAATTCAGTGTGATTTTGGTGTTTGTTTGATTGGTGATTGATCTTGTTGATCTTTTTGGTTTGTTTGTGATTGGAAATGAATTGAGATTTGAAATCGGATTCGTGGTTAGAGCGACTCTGATCGTTGATTAACGATTTACAGTTCGGGACGAGTTTGTTTCAAACGATCTGTTTTGGAATTAGCTCAGCGGTGAGTTCATGATCCTCACCGAAAAGGGGTTTAGTTTGACTTTCTTGCGGTTGACCGACTGATACAAGCCGGAACCCTTTTTTTCTTTTTAAATTGCGGCATGGGGACATTATTACTATATTCTTTTAGCTAAGAACAGGGTGGATGGATGCACATGGTTCTAAACTTCTTTGATCTGTAACTATATGATGAGATTTTGTGTTTCTTTCTTTTCTTTTCTTTCCTTCAGTTGCTTCTTAATCAAATTCGAATCGTTTTTTAACGATTATAAGAAGATTACTTTTCTGGGTGCAGAATAATTGTTGCCTGAGCTTTGAATGCAGAGAGCTATTACTTTTGAATTTGGTGTATTGTGACGAAGAGACATGAGTACGAAACTCCTGCATATCCAGCCCAAGGAACTACAATTCGTATGTAAGTGCCTCATCAGTAATACTATTTATTGCTTGTCCTTGAAAAAGAATTGAAGTGATTGATTACCTTGCTGCTTTCAGTTGAATTGAGGAAACAAAGTACGTGCACGGTTCAGCTAGCCAATAACACCAACCATCATGTTGCCTTTAAAGTATGAACAGCCTTCGTTTTGTTTTGTTTATCTTGTATTTCTTGGAAAATTTGTGAATTTTCATGTGATATATGTAATAATATTATAACGTTTGGCAGATTAAAACCACGTCTCCTAAGAAATACTGTGTTCGACCCAATGTTGGGATAGTTTTTCCAAAATCAGCATGTGAATTTTCAGGTATGTTCTGTACAAATTTCATCTAACATATTTAGGCACCTGTCCCCAACCCCGAGCAAGAAAGAGTGTTTGGGGATCTTGGTAATGAGTTTACTGCTGTCGCCATTCAATTTTAACAATTCTAAGTTTCGTCGAATTACTTCTTCTGTGTATTACTTTACATTTTCAATGTCTGATCTGCTTAATGTATTTTCTTGTGTTGAATCGATTGTGAGGGCAATTGAGCTACCTAGAAAACTCTAAAAAGGAAATTTGAAAGCATAGTATTCATTGTTTTGAGAATTGAAAACTCAAAAGAATGTCTAATATCATGAGATGATTCAGTTCTGCATTTTAAACCTGGAACTGCGTATTGTTTTTTTTTTTTTTAAGAATTAATTTCTTCTTAATTTTGATGTAGTTATAATGCAAGCTCAACGGATTGTCCCTCCCGATATGTTGTGTAAAGACAAGTTTTTAATTCAAAGCACAATTGTTCCATCAGGGACAACAGAAGAGGACATCACTGCTAGTATGGTAAGTTTTTGTGGATATAATCAGCTTTCATTCTTGAGTTCTCAATTGGTTCTTTTTTCCAGTTTTCAAAAGATGGAGGTAAATATATTGAAGAAGATAAGCTCAAAGTAGCGCTCATTAGCCCGCTGAATTCCCCAATACCCTCACCTGTTGATGGAACAATTGACGAAATCATGGATGAAGTTATGAAACTGAACGAGAAAAGTGGACCGCTAAGTGATGGGCTGGGCACCAATGAAACTACAAAGCTGAAAGATCAAAATGGTGCATCAGATGAGCTGCTTCCCTCTGGGTTTTCAACACTAAGAGAACAAATTAGACCATCAAATGGGAGGACGGCCCACGACGTTTCAGGGTTAAAGAATGTTTTTTTTGCATCATTGAAGGAGGGGCGGACAATTGAAGCTTTAAAACCATCTAATCAAAATGGAGTTTCTGAGGAGAGGTTTGTTCAATAG TCTCTCTCTCTCTACTATGCTTTCACTGATCAGTTCATCAGACCACCAAACAGATCATTCATTCACATCTTCCTCTCTCTCTCTCTCTGGAAATTTCCAGGGTTTTTCTCTCCTAATCTTTGGACGCTCTTTCAATTTCAATTCTCCGGTGCGTTTTATTTATTCAAAGCGGAAGTTTCACGGCAAAGTTTTCGTTCATCTCCACTCGCTCTTTGTTCTCTGTCTTCCGGAACAGAATAATTGTTGCCTGAGCTTTGAATGCAGAGAGCTATTACTTTTGAATTTGGTGTATTGTGACGAAGAGACATGAGTACGAAACTCCTGCATATCCAGCCCAAGGAACTACAATTCGTATTTGAATTGAGGAAACAAAGTACGTGCACGGTTCAGCTAGCCAATAACACCAACCATCATGTTGCCTTTAAAATTAAAACCACGTCTCCTAAGAAATACTGTGTTCGACCCAATGTTGGGATAGTTTTTCCAAAATCAGCATGTGAATTTTCAGTTATAATGCAAGCTCAACGGATTGTCCCTCCCGATATGTTGTGTAAAGACAAGTTTTTAATTCAAAGCACAATTGTTCCATCAGGGACAACAGAAGAGGACATCACTGCTAGTATGTTTTCAAAAGATGGAGGTAAATATATTGAAGAAGATAAGCTCAAAGTAGCGCTCATTAGCCCGCTGAATTCCCCAATACCCTCACCTGTTGATGGAACAATTGACGAAATCATGGATGAAGTTATGAAACTGAACGAGAAAAGTGGACCGCTAAGTGATGGGCTGGGCACCAATGAAACTACAAAGCTGAAAGATCAAAATGGTGCATCAGATGAGCTGCTTCCCTCTGGGTTTTCAACACTAAGAGAACAAATTAGACCATCAAATGGGAGGACGGCCCACGACGTTTCAGGGTTAAAGAATGTTTTTTTTGCATCATTGAAGGAGGGGCGGACAATTGAAGCTTTAAAACCATCTAATCAAAATGGAGTTTCTGAGGAGAGGTTTGTTCAATAG ATGAGTACGAAACTCCTGCATATCCAGCCCAAGGAACTACAATTCGTATTTGAATTGAGGAAACAAAGTACGTGCACGGTTCAGCTAGCCAATAACACCAACCATCATGTTGCCTTTAAAATTAAAACCACGTCTCCTAAGAAATACTGTGTTCGACCCAATGTTGGGATAGTTTTTCCAAAATCAGCATGTGAATTTTCAGTTATAATGCAAGCTCAACGGATTGTCCCTCCCGATATGTTGTGTAAAGACAAGTTTTTAATTCAAAGCACAATTGTTCCATCAGGGACAACAGAAGAGGACATCACTGCTAGTATGTTTTCAAAAGATGGAGGTAAATATATTGAAGAAGATAAGCTCAAAGTAGCGCTCATTAGCCCGCTGAATTCCCCAATACCCTCACCTGTTGATGGAACAATTGACGAAATCATGGATGAAGTTATGAAACTGAACGAGAAAAGTGGACCGCTAAGTGATGGGCTGGGCACCAATGAAACTACAAAGCTGAAAGATCAAAATGGTGCATCAGATGAGCTGCTTCCCTCTGGGTTTTCAACACTAAGAGAACAAATTAGACCATCAAATGGGAGGACGGCCCACGACGTTTCAGGGTTAAAGAATGTTTTTTTTGCATCATTGAAGGAGGGGCGGACAATTGAAGCTTTAAAACCATCTAATCAAAATGGAGTTTCTGAGGAGAGGTTTGTTCAATAG MSTKLLHIQPKELQFVFELRKQSTCTVQLANNTNHHVAFKIKTTSPKKYCVRPNVGIVFPKSACEFSVIMQAQRIVPPDMLCKDKFLIQSTIVPSGTTEEDITASMFSKDGGKYIEEDKLKVALISPLNSPIPSPVDGTIDEIMDEVMKLNEKSGPLSDGLGTNETTKLKDQNGASDELLPSGFSTLREQIRPSNGRTAHDVSGLKNVFFASLKEGRTIEALKPSNQNGVSEERFVQ Homology
BLAST of Carg28080 vs. NCBI nr
Match: KAG7021168.1 (Vesicle-associated protein 2-2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 470.3 bits (1209), Expect = 9.7e-129 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
BLAST of Carg28080 vs. NCBI nr
Match: KAG6586284.1 (putative manganese-transporting ATPase PDR2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123 Identity = 228/233 (97.85%), Postives = 230/233 (98.71%), Query Frame = 0
BLAST of Carg28080 vs. NCBI nr
Match: XP_022937988.1 (vesicle-associated protein 2-2-like [Cucurbita moschata] >XP_022937989.1 vesicle-associated protein 2-2-like [Cucurbita moschata]) HSP 1 Score: 450.7 bits (1158), Expect = 8.0e-123 Identity = 227/233 (97.42%), Postives = 229/233 (98.28%), Query Frame = 0
BLAST of Carg28080 vs. NCBI nr
Match: XP_023538184.1 (vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo] >XP_023538186.1 vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 449.5 bits (1155), Expect = 1.8e-122 Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0
BLAST of Carg28080 vs. NCBI nr
Match: XP_022965742.1 (vesicle-associated protein 2-2-like [Cucurbita maxima] >XP_022965743.1 vesicle-associated protein 2-2-like [Cucurbita maxima]) HSP 1 Score: 449.5 bits (1155), Expect = 1.8e-122 Identity = 226/233 (97.00%), Postives = 228/233 (97.85%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy Swiss-Prot
Match: B9DHD7 (Vesicle-associated protein 2-2 OS=Arabidopsis thaliana OX=3702 GN=PVA22 PE=1 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 7.4e-47 Identity = 91/137 (66.42%), Postives = 113/137 (82.48%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy Swiss-Prot
Match: Q8VZ95 (Vesicle-associated protein 1-1 OS=Arabidopsis thaliana OX=3702 GN=PVA11 PE=1 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 2.6e-36 Identity = 69/132 (52.27%), Postives = 96/132 (72.73%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy Swiss-Prot
Match: Q9SHC8 (Vesicle-associated protein 1-2 OS=Arabidopsis thaliana OX=3702 GN=PVA12 PE=1 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 1.3e-35 Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy Swiss-Prot
Match: Q9LVU1 (Vesicle-associated protein 2-1 OS=Arabidopsis thaliana OX=3702 GN=PVA21 PE=1 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.1e-34 Identity = 76/155 (49.03%), Postives = 103/155 (66.45%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy Swiss-Prot
Match: Q84WW5 (Vesicle-associated protein 1-3 OS=Arabidopsis thaliana OX=3702 GN=PVA13 PE=2 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 1.4e-34 Identity = 71/132 (53.79%), Postives = 96/132 (72.73%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy TrEMBL
Match: A0A6J1FHK4 (vesicle-associated protein 2-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444210 PE=4 SV=1) HSP 1 Score: 450.7 bits (1158), Expect = 3.9e-123 Identity = 227/233 (97.42%), Postives = 229/233 (98.28%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy TrEMBL
Match: A0A6J1HL55 (vesicle-associated protein 2-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465546 PE=4 SV=1) HSP 1 Score: 449.5 bits (1155), Expect = 8.6e-123 Identity = 226/233 (97.00%), Postives = 228/233 (97.85%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy TrEMBL
Match: A0A0A0LIH5 (MSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G013300 PE=4 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 5.8e-95 Identity = 185/233 (79.40%), Postives = 197/233 (84.55%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy TrEMBL
Match: A0A6J1CPY8 (vesicle-associated protein 2-2-like OS=Momordica charantia OX=3673 GN=LOC111013073 PE=4 SV=1) HSP 1 Score: 348.2 bits (892), Expect = 2.7e-92 Identity = 181/233 (77.68%), Postives = 197/233 (84.55%), Query Frame = 0
BLAST of Carg28080 vs. ExPASy TrEMBL
Match: A0A1S3C2B8 (vesicle-associated protein 2-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495652 PE=4 SV=1) HSP 1 Score: 348.2 bits (892), Expect = 2.7e-92 Identity = 181/233 (77.68%), Postives = 194/233 (83.26%), Query Frame = 0
BLAST of Carg28080 vs. TAIR 10
Match: AT1G08820.1 (vamp/synaptobrevin-associated protein 27-2 ) HSP 1 Score: 188.7 bits (478), Expect = 5.3e-48 Identity = 91/137 (66.42%), Postives = 113/137 (82.48%), Query Frame = 0
BLAST of Carg28080 vs. TAIR 10
Match: AT1G08820.2 (vamp/synaptobrevin-associated protein 27-2 ) HSP 1 Score: 188.7 bits (478), Expect = 5.3e-48 Identity = 91/137 (66.42%), Postives = 113/137 (82.48%), Query Frame = 0
BLAST of Carg28080 vs. TAIR 10
Match: AT3G60600.1 (vesicle associated protein ) HSP 1 Score: 153.7 bits (387), Expect = 1.9e-37 Identity = 69/132 (52.27%), Postives = 96/132 (72.73%), Query Frame = 0
BLAST of Carg28080 vs. TAIR 10
Match: AT3G60600.2 (vesicle associated protein ) HSP 1 Score: 153.7 bits (387), Expect = 1.9e-37 Identity = 69/132 (52.27%), Postives = 96/132 (72.73%), Query Frame = 0
BLAST of Carg28080 vs. TAIR 10
Match: AT3G60600.3 (vesicle associated protein ) HSP 1 Score: 153.7 bits (387), Expect = 1.9e-37 Identity = 69/132 (52.27%), Postives = 96/132 (72.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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