Carg28043 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28043
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L26
Location	Carg_Chr13: 3694779 .. 3695219 (-)
RNA-Seq Expression	Carg28043
Synteny	Carg28043

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAGTCGCAAGGCTCACTTCTCAGCGCCGTCGAGCGTCCGGCGGGTTCTTATGAGTGCTCCCCTCTCCGGAGATCTGCGCTCCAAGTACAATGTCCGCTCTATGCCGATTCGCAAGGACGATGAAGTTCAGGTCTTGAGAGGAACCTACAAGGGCCGCGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATCGAACGCATCACCAGAGAGAAGGTTAACGGCTCTACCGTTAACGTCGGAATCAATCCGTCCAAGGTTGTGATCACAAAGCTCAAGTTGGACAAGGACAGGAAGTCTCTTCTCGATCGTAAGGCTAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAAAGTGTCGACTAA

mRNA sequence

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAGTCGCAAGGCTCACTTCTCAGCGCCGTCGAGCGTCCGGCGGGTTCTTATGAGTGCTCCCCTCTCCGGAGATCTGCGCTCCAAGTACAATGTCCGCTCTATGCCGATTCGCAAGGACGATGAAGTTCAGGTCTTGAGAGGAACCTACAAGGGCCGCGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATCGAACGCATCACCAGAGAGAAGGTTAACGGCTCTACCGTTAACGTCGGAATCAATCCGTCCAAGGTTGTGATCACAAAGCTCAAGTTGGACAAGGACAGGAAGTCTCTTCTCGATCGTAAGGCTAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAAAGTGTCGACTAA

Coding sequence (CDS)

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAGTCGCAAGGCTCACTTCTCAGCGCCGTCGAGCGTCCGGCGGGTTCTTATGAGTGCTCCCCTCTCCGGAGATCTGCGCTCCAAGTACAATGTCCGCTCTATGCCGATTCGCAAGGACGATGAAGTTCAGGTCTTGAGAGGAACCTACAAGGGCCGCGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATCGAACGCATCACCAGAGAGAAGGTTAACGGCTCTACCGTTAACGTCGGAATCAATCCGTCCAAGGTTGTGATCACAAAGCTCAAGTTGGACAAGGACAGGAAGTCTCTTCTCGATCGTAAGGCTAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAAAGTGTCGACTAA

Protein sequence

MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRGTYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDRKAKGRASADKDKGTKFTAEDIMQSVD

Homology

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BLAST of Carg28043 vs. NCBI nr
Match: XP_022931741.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023521000.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6571308.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019317.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.1 bits (710), Expect = 4.4e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

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BLAST of Carg28043 vs. NCBI nr
Match: XP_022149443.1 (60S ribosomal protein L26-1-like [Momordica charantia])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGINPSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Carg28043 vs. NCBI nr
Match: XP_008457837.1 (PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S ribosomal protein L26-1-like [Benincasa hispida] >KAA0045834.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa] >TYJ99449.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGI PSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Carg28043 vs. NCBI nr
Match: XP_010102767.1 (60S ribosomal protein L26-1 [Morus notabilis] >EXB94051.1 60S ribosomal protein L26-1 [Morus notabilis])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKSRKAHF+APSSVRRVLMSAPLSGDLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGINPSKVVITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Carg28043 vs. NCBI nr
Match: XP_022948229.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023532418.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6605230.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035196.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+NPSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

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BLAST of Carg28043 vs. ExPASy Swiss-Prot
Match: P51414 (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 249.2 bits (635), Expect = 2.8e-65
Identity = 125/146 (85.62%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRV+MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI PSKVVITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Carg28043 vs. ExPASy Swiss-Prot
Match: Q9FJX2 (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.0e-64
Identity = 122/146 (83.56%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRVLMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+N S V+ITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of Carg28043 vs. ExPASy Swiss-Prot
Match: Q39411 (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 8.0e-60
Identity = 116/145 (80.00%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRR++RK HF+A SS RRV MS+PLS DLR KYNVRSMPIRKDDE Q++RG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK +IHIER+TREKVNG+TVNVG+ P+KVVITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSV 146
           KAKGRA+ADKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of Carg28043 vs. ExPASy Swiss-Prot
Match: Q9UNX3 (60S ribosomal protein L26-like 1 OS=Homo sapiens OX=9606 GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-44
Identity = 94/134 (70.15%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R K+RK HF+APS VRR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI+PSKVVIT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKG 134
           RKAK R    K+KG
Sbjct: 121 RKAKSR-QVGKEKG 133

[Close]

BLAST of Carg28043 vs. ExPASy Swiss-Prot
Match: P61257 (60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-44
Identity = 96/142 (67.61%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R K+RK HF+APS +RR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI+PSKVVIT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of Carg28043 vs. ExPASy TrEMBL
Match: A0A6J1ICB8 (60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111471696 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Carg28043 vs. ExPASy TrEMBL
Match: A0A6J1EUH8 (60S ribosomal protein L26-1-like OS=Cucurbita moschata OX=3662 GN=LOC111437905 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Carg28043 vs. ExPASy TrEMBL
Match: A0A6J1D6T1 (60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.2e-70
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGINPSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Carg28043 vs. ExPASy TrEMBL
Match: A0A5A7TS06 (60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00090 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.8e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGI PSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Carg28043 vs. ExPASy TrEMBL
Match: A0A1S3C7Q4 (60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.8e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGI PSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Carg28043 vs. TAIR 10
Match: AT3G49910.1 (Translation protein SH3-like family protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-66
Identity = 125/146 (85.62%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRK+RKAHF+A SS RRV+MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI PSKVVITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Carg28043 vs. TAIR 10
Match: AT5G67510.1 (Translation protein SH3-like family protein )

HSP 1 Score: 244.6 bits (623), Expect = 5.0e-65
Identity = 122/146 (83.56%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRRVLMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+N S V+ITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

The following BLAST results are available for this feature:

BLAST of Carg28043 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931741.1	4.4e-71	100.00	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S riboso...	[more]
XP_022149443.1	1.1e-69	95.89	60S ribosomal protein L26-1-like [Momordica charantia]	[more]
XP_008457837.1	1.4e-69	97.26	PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S r...	[more]
XP_010102767.1	1.8e-69	95.89	60S ribosomal protein L26-1 [Morus notabilis] >EXB94051.1 60S ribosomal protein ...	[more]
XP_022948229.1	1.8e-69	95.89	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S riboso...	[more]

BLAST of Carg28043 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51414	2.8e-65	85.62	60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2	[more]
Q9FJX2	7.0e-64	83.56	60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1	[more]
Q39411	8.0e-60	80.00	60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1	[more]
Q9UNX3	3.6e-44	70.15	60S ribosomal protein L26-like 1 OS=Homo sapiens OX=9606 GN=RPL26L1 PE=1 SV=1	[more]
P61257	3.6e-44	67.61	60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1	[more]

BLAST of Carg28043 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICB8	2.1e-71	100.00	60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111471696 PE=...	[more]
A0A6J1EUH8	2.1e-71	100.00	60S ribosomal protein L26-1-like OS=Cucurbita moschata OX=3662 GN=LOC111437905 P...	[more]
A0A6J1D6T1	5.2e-70	95.89	60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 ...	[more]
A0A5A7TS06	6.8e-70	97.26	60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C7Q4	6.8e-70	97.26	60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV...	[more]

BLAST of Carg28043 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49910.1	2.0e-66	85.62	Translation protein SH3-like family protein	[more]
AT5G67510.1	5.0e-65	83.56	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 e-value: 4.9E-6 score: 36.1
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 e-value: 8.8E-10 score: 38.2
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..144 e-value: 1.2E-56 score: 192.7
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	TIGRFAM	TIGR01080	TIGR01080	coord: 8..122 e-value: 3.7E-51 score: 170.4
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 e-value: 3.6E-38 score: 130.4
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 1..146
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	HAMAP	MF_01326_A	Ribosomal_L24_A	coord: 9..121 score: 20.54982
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR11143:SF15	60S RIBOSOMAL PROTEIN L26-1-LIKE	coord: 1..146
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 52..105 e-value: 6.052E-15 score: 63.3026
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28043-RA	Carg28043-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome