Carg27988 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27988
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCarg_Chr04: 11832739 .. 11833954 (+)
RNA-Seq ExpressionCarg27988
SyntenyCarg27988
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACAAGTTCATCAATACAATTACAACAAAATAGATCTAAATGGATCCCTGCATACTCGAGATTTGTTTTGCGACTACATGGAACAGGTCCGAACGGATCTGGAATGGTGGATCTGAACAGCAATGACGATCATAGAAATCAACTGATAACAGCGATGAGAATGGGCAACAACAATGAATGTGGGAGTGAGATGAAGTTTGAAGTTGAGAGTTTGGAGATACAAGAGGGATGAAGAGAGCACGAGATATCAGAGATGGAGAGAGCTTGAGAGACAGAGATACGAAGGAGAGAGAAATTGAGACTAAAGTTTGAGAGACACTGAATAGAAATACGATGTAGGAAATCTGAAATATTTTCTAGGAAACACTGTTGCTTGGTCTCAAAAGGGTATAATTGTATCCCAAAGGAAGTATGTACTCGATCTTTCCAAAGAAACTGGTATGTTAGGATGCAAGCCAATAAAGTCTTCTACGGACTCACAAAAGAAACTTGGATTAAATCATGGGAGCACTCCGGTGGACAGGCGAGATATCAGCACCTTGTTAGGAATAAACATCTTATCTATCTTTCTCATACTCATCCAGATATTAGGTTTGTTGTCAGCAAAGTTAGTCTCATTATAAATAGTCTTAGTGAAGAACATATGGAAGTTGTAAACCAAATTCAAGGCTATATGAAGATGATTTCCAGAATAGAACAGTTTTTTGAGAAGACTGATAAGAGAAACATTGAGGTCTACTATGATACAAATTGCACAGGAACATCACAAATAGAAAATTTACCTCAGGTTATTACTATTTTGTATGGTACTATTGCAACATGGAGAGGTAAAAAAAATCAGTGTTCGGCAGGAGTAGAATTCAAAGCACTTACTCATGGTAAATGTAAAGGCAGATGAATCAAGAGAGTCTTGAATGAATTCGGAAAAAGTTGTTCATCACCAATACAGATGGTATGTGACAATCAAAATTTGCAAAGAATTCAGTTCATTATGATAAAACAAAACATGTTGAAATGGATGGATATTTCCTCTCCCAAAAAGTCAAAAGTCAATAATGAAGTGGTTCGACTTAACTATGTGCCTATCAAACAACAAATTAACTAACATTCTTACCAAGCCTTTACCTAGGTCTTCACTTTGAAGATTTGAATAACAAGTTACAATTTTTTAGTATGTAAAACTCATGTTGGGGCAGGGTGTTGCAAATTAA

mRNA sequence

ATGGATACAAGTTCATCAATACAATTACAACAAAATAGATCTAAATGGATCCCTGCATACTCGAGATTTGTTTTGCGACTACATGGAACAGGTCCGAACGGATCTGGAATGGTGGATCTGAACAGCAATGACGATCATAGAAATCAACTGATAACAGCGATGAGAATGGGCAACAACAATGAATGTGGGAGTGAGATGAAGTTTGAAGTTGAGAATATTAGGTTTGTTGTCAGCAAAGTTAGTCTCATTATAAATAGTCTTAGTGAAGAACATATGGAAGTTGTAAACCAAATTCAAGGCTATATGAAGATGATTTCCAGAATAGAACAGTTTTTTGAGAAGACTGATAAGAGAAACATTGAGGTCTACTATGATACAAATTGCACAGGAACATCACAAATAGAAAATTTACCTCAGTATGTAAAACTCATGTTGGGGCAGGGTGTTGCAAATTAA

Coding sequence (CDS)

ATGGATACAAGTTCATCAATACAATTACAACAAAATAGATCTAAATGGATCCCTGCATACTCGAGATTTGTTTTGCGACTACATGGAACAGGTCCGAACGGATCTGGAATGGTGGATCTGAACAGCAATGACGATCATAGAAATCAACTGATAACAGCGATGAGAATGGGCAACAACAATGAATGTGGGAGTGAGATGAAGTTTGAAGTTGAGAATATTAGGTTTGTTGTCAGCAAAGTTAGTCTCATTATAAATAGTCTTAGTGAAGAACATATGGAAGTTGTAAACCAAATTCAAGGCTATATGAAGATGATTTCCAGAATAGAACAGTTTTTTGAGAAGACTGATAAGAGAAACATTGAGGTCTACTATGATACAAATTGCACAGGAACATCACAAATAGAAAATTTACCTCAGTATGTAAAACTCATGTTGGGGCAGGGTGTTGCAAATTAA

Protein sequence

MDTSSSIQLQQNRSKWIPAYSRFVLRLHGTGPNGSGMVDLNSNDDHRNQLITAMRMGNNNECGSEMKFEVENIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNIEVYYDTNCTGTSQIENLPQYVKLMLGQGVAN
Homology
[Close]
BLAST of Carg27988 vs. NCBI nr
Match: KAG7032444.1 (hypothetical protein SDJN02_06491, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MDTSSSIQLQQNRSKWIPAYSRFVLRLHGTGPNGSGMVDLNSNDDHRNQLITAMRMGNNN 60
           MDTSSSIQLQQNRSKWIPAYSRFVLRLHGTGPNGSGMVDLNSNDDHRNQLITAMRMGNNN
Sbjct: 1   MDTSSSIQLQQNRSKWIPAYSRFVLRLHGTGPNGSGMVDLNSNDDHRNQLITAMRMGNNN 60

Query: 61  ECGSEMKFEVENIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNI 120
           ECGSEMKFEVENIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNI
Sbjct: 61  ECGSEMKFEVENIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNI 120

Query: 121 EVYYDTNCTGTSQIENLPQYVKLMLGQGVAN 152
           EVYYDTNCTGTSQIENLPQYVKLMLGQGVAN
Sbjct: 121 EVYYDTNCTGTSQIENLPQYVKLMLGQGVAN 151

[Close]
BLAST of Carg27988 vs. ExPASy TrEMBL
Match: A0A5A7UJZ2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00500 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-04
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 72   NIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNIEVYYDTNCTGT 131
            +I FVVS VS  + +  EEHME V +I GY+KM       F+KTDK+ IE Y D++  G+
Sbjct: 1043 DISFVVSAVSQFMQAPYEEHMEAVKRILGYLKMTPGKRLMFKKTDKKTIETYTDSDWVGS 1102

[Close]
BLAST of Carg27988 vs. ExPASy TrEMBL
Match: A0A438CP06 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2563 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-04
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 72  NIRFVVSKVSLIINSLSEEHMEVVNQIQGYMKMISRIEQFFEKTDKRNIEVYYDTNCTG 131
           +I FVVS VS  ++S +EEHME V +I  Y+KM  R   FF+KT+ R+ EVY D +  G
Sbjct: 477 DIGFVVSTVSQFMHSPTEEHMEAVYRILRYLKMTPRKGLFFKKTENRDTEVYLDADWAG 535

The following BLAST results are available for this feature:
BLAST of Carg27988 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032444.11.0e-78100.00hypothetical protein SDJN02_06491, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg27988 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27988 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UJZ28.7e-0446.67Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G... [more]
A0A438CP068.7e-0449.15Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
BLAST of Carg27988 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27988-RACarg27988-RAmRNA