Carg27947 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27947
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	HMG-Y-related protein A
Location	Carg_Chr15: 5641369 .. 5642071 (+)
RNA-Seq Expression	Carg27947
Synteny	Carg27947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGTGTTTCTCTCTCAACTCTCTCTCTAAAATCTTATCTGTCCTCGGTCTCCGCCGCCGCCATGGGCACCGAAGACCAGCTCAACAACCCCCCTCAACCCCCTCCTCCGGCTCCTTCTCTCCCTCACTACCCCGAGGTATCACTTTTTCTCTCTCAGTCTTTGCATTTCTTAATTTTGTTTTATTAAAATTAATTTTGGAAAATTTCTTTCGCAGATGATTATGACAGCGATCGAAGCTCTGAACGACAAAAACGGAGTGAGCAAAACGGCGATAACGAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCGCTCACCACTTAGACGTCATGAAGCAAACAGGCAAACTCCTCTTCGTCAAAAACAACTACATGAAGCCTGATCCCAACGCACCGCCCAAGCGTGGCCGTGGCCGCCCTCCCAAGCCTAAAGTCCCTCTTCCGCCAGGCACCGTCGTCCCTCCACCTCGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCGCAGCCGAAGAAGAAAACCTCGACGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTCCCCGAAACCTGCGCCAACGTCTGCTCCTCCTGTCGCCGGCCCCCCCAGAGGCAGAGGGCGGCCACCGAAGGTTAAGCCGGCGGTGGCCCCCATTGGGTGTTAA

mRNA sequence

TACAGTGTTTCTCTCTCAACTCTCTCTCTAAAATCTTATCTGTCCTCGGTCTCCGCCGCCGCCATGGGCACCGAAGACCAGCTCAACAACCCCCCTCAACCCCCTCCTCCGGCTCCTTCTCTCCCTCACTACCCCGAGATGATTATGACAGCGATCGAAGCTCTGAACGACAAAAACGGAGTGAGCAAAACGGCGATAACGAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCGCTCACCACTTAGACGTCATGAAGCAAACAGGCAAACTCCTCTTCGTCAAAAACAACTACATGAAGCCTGATCCCAACGCACCGCCCAAGCGTGGCCGTGGCCGCCCTCCCAAGCCTAAAGTCCCTCTTCCGCCAGGCACCGTCGTCCCTCCACCTCGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCGCAGCCGAAGAAGAAAACCTCGACGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTCCCCGAAACCTGCGCCAACGTCTGCTCCTCCTGTCGCCGGCCCCCCCAGAGGCAGAGGGCGGCCACCGAAGGTTAAGCCGGCGGTGGCCCCCATTGGGTGTTAA

Coding sequence (CDS)

ATGGGCACCGAAGACCAGCTCAACAACCCCCCTCAACCCCCTCCTCCGGCTCCTTCTCTCCCTCACTACCCCGAGATGATTATGACAGCGATCGAAGCTCTGAACGACAAAAACGGAGTGAGCAAAACGGCGATAACGAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCGCTCACCACTTAGACGTCATGAAGCAAACAGGCAAACTCCTCTTCGTCAAAAACAACTACATGAAGCCTGATCCCAACGCACCGCCCAAGCGTGGCCGTGGCCGCCCTCCCAAGCCTAAAGTCCCTCTTCCGCCAGGCACCGTCGTCCCTCCACCTCGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCGCAGCCGAAGAAGAAAACCTCGACGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTCCCCGAAACCTGCGCCAACGTCTGCTCCTCCTGTCGCCGGCCCCCCCAGAGGCAGAGGGCGGCCACCGAAGGTTAAGCCGGCGGTGGCCCCCATTGGGTGTTAA

Protein sequence

MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC

Homology

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BLAST of Carg27947 vs. NCBI nr
Match: XP_022938491.1 (HMG-Y-related protein A [Cucurbita moschata] >KAG6579257.1 HMG-Y-related protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016774.1 HMG-Y-related protein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.4 bits (934), Expect = 5.9e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF
Sbjct: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAPIGC
Sbjct: 181 VAPIGC 186

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BLAST of Carg27947 vs. NCBI nr
Match: XP_023550058.1 (HMG-Y-related protein A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.9 bits (925), Expect = 6.5e-96
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           M TEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF
Sbjct: 1   MVTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAPIGC
Sbjct: 181 VAPIGC 186

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BLAST of Carg27947 vs. NCBI nr
Match: XP_022973541.1 (HMG-Y-related protein A-like [Cucurbita maxima])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 183/186 (98.39%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           M TEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALND NGVSKTAITKQIES YGDLPPAF
Sbjct: 1   MATEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDINGVSKTAITKQIESIYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAPIGC
Sbjct: 181 VAPIGC 186

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BLAST of Carg27947 vs. NCBI nr
Match: XP_008466945.1 (PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related protein A [Cucumis melo var. makuwa] >TYK30498.1 HMG-Y-related protein A [Cucumis melo var. makuwa])

HSP 1 Score: 343.6 bits (880), Expect = 1.1e-90
Identity = 173/186 (93.01%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAP+GC
Sbjct: 181 VAPVGC 186

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BLAST of Carg27947 vs. NCBI nr
Match: XP_004150116.1 (HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_008586 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-90
Identity = 172/186 (92.47%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLL HHLDVMKQTG+LLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAP+GC
Sbjct: 181 VAPVGC 186

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BLAST of Carg27947 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.4e-46
Identity = 111/184 (60.33%), Postives = 130/184 (70.65%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           M TE+   N PQ      SLP YPEMI+  +EALN+ NG +K+AI+K IE+TYG+LP A 
Sbjct: 1   MATEEV--NKPQ------SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA- 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
            T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRPPKPK PLPPGTVV PPRPRG
Sbjct: 61  -TVLGSHLNKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RP  PKDP AP   PK K + GSGRPRGRP K P+    +AP      R RGRPPKVKP 
Sbjct: 121 RP--PKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQ 172

Query: 181 VAPI 185
           +  +
Sbjct: 181 LTEV 172

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BLAST of Carg27947 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-44
Identity = 114/189 (60.32%), Postives = 131/189 (69.31%), Query Frame = 0


Query: 16  PAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTG 75
           P+ SLP YP+MIM AIE+LNDKNG +KT I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  KLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVV--PPPRPRGRPPK 135
           +L+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVV   PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTSTGSGRPRGRPPKSPK------PAPTSAPPVAGPPRGRGRPPKVK 187
           PKDP  P   P++K  TGSGRPRGRPPK P+       AP  A    G  RGRGRPPKVK
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 198

[Close]

BLAST of Carg27947 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-37
Identity = 91/152 (59.87%), Postives = 110/152 (72.37%), Query Frame = 0


Query: 33  ALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAP 92
           ALN+ +G +K+AI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 93  PKRGRGRPPKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPK 152
           PKRGRGRPPKPKVPLPPGTVV PPRPRGRP  PKDP AP   PK K +  +GRPRGRP K
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP--PKDPNAPPKSPKAKATPATGRPRGRPKK 120

Query: 153 SPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPI 185
             +     +P      R RGRPPKVKP +  +
Sbjct: 121 VARSPAVPSPTAVSTGRPRGRPPKVKPQLTEV 148

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BLAST of Carg27947 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-31
Identity = 93/182 (51.10%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 16  PAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTG 75
           P+P +P YPEMI+ AIE L+DK+G +K+AI+K IE  YG LPPA  +LL  HL  MK++G
Sbjct: 9   PSP-IPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKESG 68

Query: 76  KLLFVKNNYMKPD-PNAPPKRGRGRPPKPKVPLPPGTVVPPP----RPRGRPPKPKDPFA 135
           +L+F+KNNY +   P+APPKRGRGRPPK + P  P      P    R RGRPPK K   +
Sbjct: 69  ELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGRPPKAK---S 128

Query: 136 PISQPKKKTSTGSGRPRGRPPKSPK------PAPTSAPPVAGP-----PRGRGRPPKVKP 182
           P+    K+ + G  +PRGRPPK  K      P+P+ AP  AG       RGRGRPPKV+P
Sbjct: 129 PLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRGRPPKVRP 186

[Close]

BLAST of Carg27947 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 61/182 (33.52%), Postives = 83/182 (45.60%), Query Frame = 0


Query: 19  SLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTGKLL 78
           S P + EMI  AI  L ++ G S+ AI K +E  +  LP  F  LL  HL  +  +GKL+
Sbjct: 50  SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLV 109

Query: 79  FVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRGRPPKPKDPFA-------- 138
            VKN++  P   A P     +  KP +P P     P     G  PK K   A        
Sbjct: 110 KVKNSFKLPSARAAPAPALAK--KPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATTK 169

Query: 139 ------PISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRP-PKVKPAVAP 186
                 P ++PK KT   +G+P+    K  K A T+A  VA P + +  P  KVK   +P
Sbjct: 170 TVAKKIPAAKPKAKT---AGKPKTVAAKPAKVAKTAA--VASPGKKKAVPVKKVKTVKSP 224

[Close]

BLAST of Carg27947 vs. ExPASy TrEMBL
Match: A0A6J1FDA7 (HMG-Y-related protein A OS=Cucurbita moschata OX=3662 GN=LOC111444711 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.9e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF
Sbjct: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAPIGC
Sbjct: 181 VAPIGC 186

[Close]

BLAST of Carg27947 vs. ExPASy TrEMBL
Match: A0A6J1I8X7 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111472076 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.0e-95
Identity = 183/186 (98.39%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           M TEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALND NGVSKTAITKQIES YGDLPPAF
Sbjct: 1   MATEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDINGVSKTAITKQIESIYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAPIGC
Sbjct: 181 VAPIGC 186

[Close]

BLAST of Carg27947 vs. ExPASy TrEMBL
Match: A0A5D3E3W3 (HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00410 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.2e-91
Identity = 173/186 (93.01%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAP+GC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Carg27947 vs. ExPASy TrEMBL
Match: A0A1S3CSD8 (HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.2e-91
Identity = 173/186 (93.01%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAP+GC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Carg27947 vs. ExPASy TrEMBL
Match: A0A0A0KPG4 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.8e-91
Identity = 172/186 (92.47%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60
           M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120
           TTLL HHLDVMKQTG+LLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPIGC 187
           VAP+GC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Carg27947 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 181.0 bits (458), Expect = 8.6e-46
Identity = 114/189 (60.32%), Postives = 131/189 (69.31%), Query Frame = 0


Query: 16  PAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLAHHLDVMKQTG 75
           P+ SLP YP+MIM AIE+LNDKNG +KT I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  KLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVV--PPPRPRGRPPK 135
           +L+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVV   PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTSTGSGRPRGRPPKSPK------PAPTSAPPVAGPPRGRGRPPKVK 187
           PKDP  P   P++K  TGSGRPRGRPPK P+       AP  A    G  RGRGRPPKVK
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 198

[Close]

BLAST of Carg27947 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-10
Identity = 74/219 (33.79%), Postives = 96/219 (43.84%), Query Frame = 0


Query: 6   QLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLLA 65
           Q    P PP P+ S P Y +MI TAI ALN+ +G SK AI++ IE  Y  +P A   LL 
Sbjct: 61  QPQTSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLT 120

Query: 66  HHLDVMKQTGKLLFVKNNY-MKPDPNAPP------------------------------- 125
           HHL  +K +G L+ VK +Y +   P  PP                               
Sbjct: 121 HHLKTLKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASS 180

Query: 126 -----KRGRGRPPKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRG 185
                KRGRGRPPK K    P  V P P   G+    +    P+S+P++         + 
Sbjct: 181 TPQTIKRGRGRPPKAK----PDVVQPQPLTNGKLTWEQSEL-PVSRPEE--------IQI 240

[Close]

BLAST of Carg27947 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-08
Identity = 72/203 (35.47%), Postives = 91/203 (44.83%), Query Frame = 0


Query: 11  PQPP----PPAPSLPH--YPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAFTTLL 70
           PQP      P  S+PH  Y EMI  AI ALN+ +G SK AI++ IE  Y  L  A   LL
Sbjct: 50  PQPQMFQLSPHVSMPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALL 109

Query: 71  AHHLDVMKQTGKLLFVKNNYMKPDPNAPP--------KRGRGRP-PKPKV-------PLP 130
            HHL  +K +G L  VK +Y     + PP           +G   P+ ++       P+ 
Sbjct: 110 THHLKTLKTSGVLSMVKKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMA 169

Query: 131 PGTVVPP-PRPRGRPPKPKDPF--APISQ-PKKKTSTGSGRPRGRPPKSPKPAPTSAPPV 185
            G+   P  R RGRPPKPK      P+ Q P       +G+P     +   P P   P  
Sbjct: 170 SGSASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVT 229

[Close]

BLAST of Carg27947 vs. TAIR 10
Match: AT1G44191.1 (ECA1 gametogenesis related family protein )

HSP 1 Score: 44.7 bits (104), Expect = 9.6e-05
Identity = 41/107 (38.32%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 87  PDPNAPPKRGRGRPPKPK-VPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKK-----KTS 146
           P P++PP   +  PP PK  P PP    PPP P+  PP P  P +P   PKK     K S
Sbjct: 152 PKPSSPPPSPKKSPPPPKPSPSPPKPSTPPPTPKKSPPSPPKPSSPPPSPKKSPPPPKPS 211

Query: 147 TGSGRPRGRPP----KSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAP 184
               +P   PP      P P P+  PP   PPR +  PP  KP+  P
Sbjct: 212 PSPPKPSTPPPTPKKSPPPPKPSQPPPKPSPPRRKPSPPTPKPSTTP 258

The following BLAST results are available for this feature:

BLAST of Carg27947 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938491.1	5.9e-97	100.00	HMG-Y-related protein A [Cucurbita moschata] >KAG6579257.1 HMG-Y-related protein...	[more]
XP_023550058.1	6.5e-96	99.46	HMG-Y-related protein A [Cucurbita pepo subsp. pepo]	[more]
XP_022973541.1	1.2e-94	98.39	HMG-Y-related protein A-like [Cucurbita maxima]	[more]
XP_008466945.1	1.1e-90	93.01	PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related pr...	[more]
XP_004150116.1	1.4e-90	92.47	HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_0...	[more]

BLAST of Carg27947 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	8.4e-46	60.33	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	1.2e-44	60.32	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q10370	1.9e-37	59.87	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q9FYS5	3.4e-31	51.10	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]
Q9M5W4	1.4e-05	33.52	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]

BLAST of Carg27947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDA7	2.9e-97	100.00	HMG-Y-related protein A OS=Cucurbita moschata OX=3662 GN=LOC111444711 PE=4 SV=1	[more]
A0A6J1I8X7	6.0e-95	98.39	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111472076 PE=4 SV...	[more]
A0A5D3E3W3	5.2e-91	93.01	HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CSD8	5.2e-91	93.01	HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1	[more]
A0A0A0KPG4	6.8e-91	92.47	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV...	[more]

BLAST of Carg27947 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	8.6e-46	60.32	high mobility group A	[more]
AT1G48620.1	7.6e-10	33.79	high mobility group A5	[more]
AT3G18035.1	2.4e-08	35.47	winged-helix DNA-binding transcription factor family protein	[more]
AT1G44191.1	9.6e-05	38.32	ECA1 gametogenesis related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 94..104 score: 77.27 coord: 142..152 score: 69.32 coord: 114..125 score: 62.5
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 168..180 e-value: 1.1 score: 15.1 coord: 116..128 e-value: 23.0 score: 7.6 coord: 144..156 e-value: 5.2 score: 11.2 coord: 94..106 e-value: 11.0 score: 9.3
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 92..104 score: 65.93 coord: 107..118 score: 36.9 coord: 118..129 score: 50.0 coord: 133..152 score: 48.57
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 17..83 e-value: 1.2E-20 score: 84.6
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 21..82 e-value: 7.2E-11 score: 42.3
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 19..88 score: 22.513918
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 16..97 e-value: 3.9E-14 score: 54.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 5..183
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 5..183
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 15..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27947-RA	Carg27947-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding