Carg27853 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27853
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Translocase subunit seca
Location	Carg_Chr15: 6255119 .. 6255664 (-)
RNA-Seq Expression	Carg27853
Synteny	Carg27853

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGATGGTGGTTCAACACAACGCTTTTTCAGTTCATGACGACATGCTCAACGCCTCCGCCGTCGACGAACGACTGGTTTGCCCAAAACCCCGCCGTCTCGGTTCCATCAACGTCCGCCCTTTTCAATCAGATGCTTTGGAACTCCTCTTCTTAAAGGTACGTAATTTTGGGTTCAAATTCCTTATTCAATAAAACAATTTTTATTCCATCTTTTTCTTTTTCCAGGGTGGTTGTGGATTGGAGAGTTTTAACAGTAGTGGTACAGAATTAGCCTCGTCGCCGCCGTTTTTTTGTGGGTCGCCGCCGACCAGAGTAGCTAACCCATTAATCCAAGACGATCGATTTGGGGATGAGAAGCCGAAGGTGTTTCCCCTCTTCTCGTCAGCGCCTCCTTCTCCGTCATCGCCTCCGCCGTCAACTGGTCGGACAGGCGGATGTGTTCGGGTTAATTTTGGAAACAACCCGGCGGTGAGAATTGAGGGGTTTGAATGCCGGCTCGATAGGGAGAGGCGAAACCGCAGCGTTGCTGCTCTGGCTTAG

mRNA sequence

ATGAACAAGATGGTGGTTCAACACAACGCTTTTTCAGTTCATGACGACATGCTCAACGCCTCCGCCGTCGACGAACGACTGGTTTGCCCAAAACCCCGCCGTCTCGGTTCCATCAACGTCCGCCCTTTTCAATCAGATGCTTTGGAACTCCTCTTCTTAAAGGGTGGTTGTGGATTGGAGAGTTTTAACAGTAGTGGTACAGAATTAGCCTCGTCGCCGCCGTTTTTTTGTGGGTCGCCGCCGACCAGAGTAGCTAACCCATTAATCCAAGACGATCGATTTGGGGATGAGAAGCCGAAGGTGTTTCCCCTCTTCTCGTCAGCGCCTCCTTCTCCGTCATCGCCTCCGCCGTCAACTGGTCGGACAGGCGGATGTGTTCGGGTTAATTTTGGAAACAACCCGGCGGTGAGAATTGAGGGGTTTGAATGCCGGCTCGATAGGGAGAGGCGAAACCGCAGCGTTGCTGCTCTGGCTTAG

Coding sequence (CDS)

ATGAACAAGATGGTGGTTCAACACAACGCTTTTTCAGTTCATGACGACATGCTCAACGCCTCCGCCGTCGACGAACGACTGGTTTGCCCAAAACCCCGCCGTCTCGGTTCCATCAACGTCCGCCCTTTTCAATCAGATGCTTTGGAACTCCTCTTCTTAAAGGGTGGTTGTGGATTGGAGAGTTTTAACAGTAGTGGTACAGAATTAGCCTCGTCGCCGCCGTTTTTTTGTGGGTCGCCGCCGACCAGAGTAGCTAACCCATTAATCCAAGACGATCGATTTGGGGATGAGAAGCCGAAGGTGTTTCCCCTCTTCTCGTCAGCGCCTCCTTCTCCGTCATCGCCTCCGCCGTCAACTGGTCGGACAGGCGGATGTGTTCGGGTTAATTTTGGAAACAACCCGGCGGTGAGAATTGAGGGGTTTGAATGCCGGCTCGATAGGGAGAGGCGAAACCGCAGCGTTGCTGCTCTGGCTTAG

Protein sequence

MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLESFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTGRTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA

Homology

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BLAST of Carg27853 vs. NCBI nr
Match: KAG6579280.1 (hypothetical protein SDJN03_23728, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324.7 bits (831), Expect = 4.4e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 60
           MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE
Sbjct: 28  MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 87

Query: 61  SFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG 120
           SFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG
Sbjct: 88  SFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG 147

Query: 121 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 159
           RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA
Sbjct: 148 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 185

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BLAST of Carg27853 vs. NCBI nr
Match: KAG7016791.1 (hypothetical protein SDJN02_21901, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324.7 bits (831), Expect = 4.4e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 60
           MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE
Sbjct: 1   MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 60

Query: 61  SFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG 120
           SFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG
Sbjct: 61  SFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG 120

Query: 121 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 159
           RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA
Sbjct: 121 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 158

[Close]

BLAST of Carg27853 vs. NCBI nr
Match: XP_022939182.1 (uncharacterized protein LOC111445178 [Cucurbita moschata])

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 60
           MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE
Sbjct: 28  MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 87

Query: 61  SFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG 120
           SFNSSGTELASSPPFFCGSPP+RVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG
Sbjct: 88  SFNSSGTELASSPPFFCGSPPSRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG 147

Query: 121 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 159
           RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA
Sbjct: 148 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 185

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BLAST of Carg27853 vs. NCBI nr
Match: XP_023545156.1 (uncharacterized protein LOC111804540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.2 bits (822), Expect = 4.9e-84
Identity = 155/158 (98.10%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 60
           MNKMVVQHNAFSVHDDMLNASA+DERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE
Sbjct: 1   MNKMVVQHNAFSVHDDMLNASALDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 60

Query: 61  SFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG 120
           SFNSSGTELASSPPFFCGSPP+RVANPLIQDDRFGDEKPKVFP+FSSAPPSPSSPPPSTG
Sbjct: 61  SFNSSGTELASSPPFFCGSPPSRVANPLIQDDRFGDEKPKVFPIFSSAPPSPSSPPPSTG 120

Query: 121 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 159
           RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA
Sbjct: 121 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 158

[Close]

BLAST of Carg27853 vs. NCBI nr
Match: XP_022973561.1 (uncharacterized protein LOC111472100 [Cucurbita maxima])

HSP 1 Score: 307.4 bits (786), Expect = 7.3e-80
Identity = 151/160 (94.38%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVD--ERLVCPKPRRLGSINVRPFQSDALELLFLKGGCG 60
           MNKMVVQHNA SVHDDMLNASAVD  +RLVCPKPRRL  INVRPFQSDALELLFLKGGCG
Sbjct: 1   MNKMVVQHNALSVHDDMLNASAVDPHQRLVCPKPRRLAPINVRPFQSDALELLFLKGGCG 60

Query: 61  LESFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPS 120
           L+SFNSSGTELASSPPFFCGSPP+RVANPLIQDDRFGDEKPKVFPLFS APPSPSSPPPS
Sbjct: 61  LDSFNSSGTELASSPPFFCGSPPSRVANPLIQDDRFGDEKPKVFPLFSPAPPSPSSPPPS 120

Query: 121 TGRTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 159
           TGRTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA
Sbjct: 121 TGRTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 160

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BLAST of Carg27853 vs. ExPASy TrEMBL
Match: A0A6J1FG33 (uncharacterized protein LOC111445178 OS=Cucurbita moschata OX=3662 GN=LOC111445178 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.2e-85
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 60
           MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE
Sbjct: 28  MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSINVRPFQSDALELLFLKGGCGLE 87

Query: 61  SFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG 120
           SFNSSGTELASSPPFFCGSPP+RVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG
Sbjct: 88  SFNSSGTELASSPPFFCGSPPSRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTG 147

Query: 121 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 159
           RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA
Sbjct: 148 RTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 185

[Close]

BLAST of Carg27853 vs. ExPASy TrEMBL
Match: A0A6J1I8Z5 (uncharacterized protein LOC111472100 OS=Cucurbita maxima OX=3661 GN=LOC111472100 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.5e-80
Identity = 151/160 (94.38%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVD--ERLVCPKPRRLGSINVRPFQSDALELLFLKGGCG 60
           MNKMVVQHNA SVHDDMLNASAVD  +RLVCPKPRRL  INVRPFQSDALELLFLKGGCG
Sbjct: 1   MNKMVVQHNALSVHDDMLNASAVDPHQRLVCPKPRRLAPINVRPFQSDALELLFLKGGCG 60

Query: 61  LESFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPS 120
           L+SFNSSGTELASSPPFFCGSPP+RVANPLIQDDRFGDEKPKVFPLFS APPSPSSPPPS
Sbjct: 61  LDSFNSSGTELASSPPFFCGSPPSRVANPLIQDDRFGDEKPKVFPLFSPAPPSPSSPPPS 120

Query: 121 TGRTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 159
           TGRTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA
Sbjct: 121 TGRTGGCVRVNFGNNPAVRIEGFECRLDRERRNRSVAALA 160

[Close]

BLAST of Carg27853 vs. ExPASy TrEMBL
Match: A0A1S3CR46 (uncharacterized protein LOC103503385 OS=Cucumis melo OX=3656 GN=LOC103503385 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 109/151 (72.19%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 18  LNASAVD--ERLVCPKPRRLGSIN--------VRPFQSDALELLFLKGGCGLESFNSSGT 77
           + ++A D  ER+VCPKPRRLG IN           F SDA++LLFLKGGCGLE FNSS T
Sbjct: 8   MRSAATDRRERIVCPKPRRLGLINDTCNDNPFRHRFDSDAMDLLFLKGGCGLEKFNSSNT 67

Query: 78  ELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTGRTGGCVR 137
           +LASS P+FCGSPP+RVANPLIQD RFGDEKPK+ PLFS+A   P SPPPS GR GGCVR
Sbjct: 68  QLASSTPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSTAASPPLSPPPSAGRKGGCVR 127

Query: 138 VNFGNNPAVRIEGFECRLDRERRNRSVAALA 159
           VNFGNNPAVRIEGF+CRLDRERRNRS+ ALA
Sbjct: 128 VNFGNNPAVRIEGFDCRLDRERRNRSIPALA 158

[Close]

BLAST of Carg27853 vs. ExPASy TrEMBL
Match: A0A5D3C147 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00810 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 109/151 (72.19%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 18  LNASAVD--ERLVCPKPRRLGSIN--------VRPFQSDALELLFLKGGCGLESFNSSGT 77
           + ++A D  ER+VCPKPRRLG IN           F SDA++LLFLKGGCGLE FNSS T
Sbjct: 1   MRSAATDRRERIVCPKPRRLGLINDTCNDNPFRHRFDSDAMDLLFLKGGCGLEKFNSSNT 60

Query: 78  ELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTGRTGGCVR 137
           +LASS P+FCGSPP+RVANPLIQD RFGDEKPK+ PLFS+A   P SPPPS GR GGCVR
Sbjct: 61  QLASSTPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSTAASPPLSPPPSAGRKGGCVR 120

Query: 138 VNFGNNPAVRIEGFECRLDRERRNRSVAALA 159
           VNFGNNPAVRIEGF+CRLDRERRNRS+ ALA
Sbjct: 121 VNFGNNPAVRIEGFDCRLDRERRNRSIPALA 151

[Close]

BLAST of Carg27853 vs. ExPASy TrEMBL
Match: A0A0A0KRF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G373190 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.7e-53
Identity = 107/142 (75.35%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 25  ERLVCPKPRRLGSIN--------VRPFQSDALELLFLKGGCGLESFNSSGTELASSPPFF 84
           ER+VCPKPRRLG IN           F SDAL+LLFLKGGCGLE+FNSS  +LASSPP+F
Sbjct: 17  ERIVCPKPRRLGLINDTCNDNPFRHRFDSDALDLLFLKGGCGLENFNSSNAQLASSPPYF 76

Query: 85  CGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAPPSPSSPPPSTGRTGGCVRVNFGNNPAV 144
           CGSPP+RVANPLIQD RFGDEKPK+ PLFS A   P SPPPS GR GGCVRVNFG NPAV
Sbjct: 77  CGSPPSRVANPLIQDARFGDEKPKLLPLFSPAASPPLSPPPSAGRKGGCVRVNFGKNPAV 136

Query: 145 RIEGFECRLDRERRNRSVAALA 159
           RIEGF+CRLDRERRNRS+ ALA
Sbjct: 137 RIEGFDCRLDRERRNRSIPALA 158

[Close]

BLAST of Carg27853 vs. TAIR 10
Match: AT1G68490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-28
Identity = 85/187 (45.45%), Postives = 108/187 (57.75%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNAS-AVDER----LVCPKPRRLG--------SINVRPF---- 60
           MN   VQ NAF+   D+ ++S +V ER    +VCPKPRR+G        S ++R +    
Sbjct: 1   MNHFAVQPNAFAAGGDLRSSSVSVVERDQTTVVCPKPRRIGLRNNHHHPSRSLRCYFSHQ 60

Query: 61  --------QSDALELLFLKGGCGLESFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFG 120
                   ++D L+++  K G G E  N     + S  PF CGSPP+RVANPL QD RF 
Sbjct: 61  LELCESKAETDILDIILTKDGYGAEQVNKQ--VIDSPSPFLCGSPPSRVANPLTQDARFR 120

Query: 121 DE---KPKVFPLFSSAPPSPSSPPPSTGRTGGC-VRVNFGNNPAVRIEGFECRLDRERRN 159
           DE      V P     PPS SSP  S+GR GGC VR NFGN+P VR+EGF+C LDR+ RN
Sbjct: 121 DEIVSVSSVIPPQLGLPPS-SSPSSSSGRKGGCVVRGNFGNSPKVRVEGFDC-LDRDSRN 180

[Close]

BLAST of Carg27853 vs. TAIR 10
Match: AT5G16110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-25
Identity = 77/181 (42.54%), Postives = 105/181 (58.01%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVDERLVCPKPRRLGSIN---VRPFQ----SDALELLFL 60
           MN   +Q NAF   ++M+     D  +VCPKPRR+G +    +RP +      A +L   
Sbjct: 67  MNHCNLQQNAFMSREEMMGFDRKD-LVVCPKPRRVGLLANNVIRPLRLHMSQAAADLCDS 126

Query: 61  KGGCGL-------ESFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEK-------- 120
           K G  L       E   + G  L+SSPP+F GSPP+R ANPL QD RF DEK        
Sbjct: 127 KAGAELLEIIRRKEDNGTIGQLLSSSPPYFPGSPPSRAANPLAQDARFRDEKLNPISPNS 186

Query: 121 PKVFPLFSSAPPSPSSPPPSTGRTGGCVRVNFG-NNPAVRIEGFECRLDRERRNRSVAAL 159
           P + P  ++  PSPSS   S+  + GCVR+ FG N+PAVR+EGF+C L+R+R+N S+ A+
Sbjct: 187 PFLQPYSATGFPSPSS-SSSSSSSRGCVRMKFGLNSPAVRVEGFDC-LNRDRQNSSIPAM 244

[Close]

BLAST of Carg27853 vs. TAIR 10
Match: AT1G13390.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 8.7e-23
Identity = 71/187 (37.97%), Postives = 100/187 (53.48%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVDER---LVCPKPRRLGSINVRPFQ------------- 60
           MN   +Q NAF   ++M   +AV +R   ++CPKPRR+G++N    +             
Sbjct: 2   MNSCGIQQNAF---EEMRRNAAVSDRRDAVICPKPRRVGALNHHSSRSLRWQLNHQMELC 61

Query: 61  -----SDALELLFLKGGCGLESFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKP 120
                S+ L+ +  KGG G    + + T + + P FF GSPP+RV+NPL +D  F +E  
Sbjct: 62  ESNSGSEILDFILTKGGGGGGEQDQTRT-VMTPPLFFTGSPPSRVSNPLTKDSLFREE-- 121

Query: 121 KVFPLFSSAPPSPSSP------PPSTGRTGGCV--RVNFGNNPAVRIEGFECRLDRERRN 159
               L   A PSPS+P      PPS+ R G CV    +FGNNP VR+ GF+C  DR   N
Sbjct: 122 ----LLMVASPSPSTPRATKPQPPSSPRNGSCVMAATSFGNNPVVRVVGFDC--DRRSSN 176

[Close]

BLAST of Carg27853 vs. TAIR 10
Match: AT1G13390.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 8.7e-23
Identity = 71/187 (37.97%), Postives = 100/187 (53.48%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDMLNASAVDER---LVCPKPRRLGSINVRPFQ------------- 60
           MN   +Q NAF   ++M   +AV +R   ++CPKPRR+G++N    +             
Sbjct: 2   MNSCGIQQNAF---EEMRRNAAVSDRRDAVICPKPRRVGALNHHSSRSLRWQLNHQMELC 61

Query: 61  -----SDALELLFLKGGCGLESFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKP 120
                S+ L+ +  KGG G    + + T + + P FF GSPP+RV+NPL +D  F +E  
Sbjct: 62  ESNSGSEILDFILTKGGGGGGEQDQTRT-VMTPPLFFTGSPPSRVSNPLTKDSLFREE-- 121

Query: 121 KVFPLFSSAPPSPSSP------PPSTGRTGGCV--RVNFGNNPAVRIEGFECRLDRERRN 159
               L   A PSPS+P      PPS+ R G CV    +FGNNP VR+ GF+C  DR   N
Sbjct: 122 ----LLMVASPSPSTPRATKPQPPSSPRNGSCVMAATSFGNNPVVRVVGFDC--DRRSSN 176

[Close]

BLAST of Carg27853 vs. TAIR 10
Match: AT3G02555.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-21
Identity = 72/171 (42.11%), Postives = 97/171 (56.73%), Query Frame = 0


Query: 1   MNKMVVQHNAFSVHDDM-----LNASAVDERLVCPKPRRLGSINVRPFQ-----SDALEL 60
           MN   +Q NAF   ++      + +  VD  +VCPKPRR  ++ +RPF+     S A ++
Sbjct: 1   MNHCSLQQNAFLSREESRGFVPIYSHPVDS-VVCPKPRRANNV-IRPFRLHFSLSGADDV 60

Query: 61  LFLKGGCG-LESFNSSGTELASSPPFFCGSPPTRVANPLIQDDRFGDEKPKVFPLFSSAP 120
              K G   L+ F    +  + SPPFF GSPP+R ANPL QD RFGDEK       ++  
Sbjct: 61  CDSKAGEDLLDIFRRKESVSSRSPPFFLGSPPSRAANPLAQDARFGDEK------LNTVS 120

Query: 121 PSPSSPPPSTGRT-GGCVRVNFGNNPA-VRIEGFECRLDRERRNRSVAALA 159
           PS S   PS  R   GC R+ FG  PA VR+EGF+C L+R+R N S+ A+A
Sbjct: 121 PSLSPLLPSASRVKSGCGRMKFGVKPATVRVEGFDC-LNRDRPNSSIPAMA 162

The following BLAST results are available for this feature:

BLAST of Carg27853 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579280.1	4.4e-85	100.00	hypothetical protein SDJN03_23728, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016791.1	4.4e-85	100.00	hypothetical protein SDJN02_21901, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022939182.1	1.3e-84	99.37	uncharacterized protein LOC111445178 [Cucurbita moschata]	[more]
XP_023545156.1	4.9e-84	98.10	uncharacterized protein LOC111804540 [Cucurbita pepo subsp. pepo]	[more]
XP_022973561.1	7.3e-80	94.38	uncharacterized protein LOC111472100 [Cucurbita maxima]	[more]

BLAST of Carg27853 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27853 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG33	6.2e-85	99.37	uncharacterized protein LOC111445178 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1I8Z5	3.5e-80	94.38	uncharacterized protein LOC111472100 OS=Cucurbita maxima OX=3661 GN=LOC111472100...	[more]
A0A1S3CR46	1.3e-53	72.19	uncharacterized protein LOC103503385 OS=Cucumis melo OX=3656 GN=LOC103503385 PE=...	[more]
A0A5D3C147	1.3e-53	72.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KRF1	3.7e-53	75.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G373190 PE=4 SV=1	[more]

BLAST of Carg27853 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68490.1	1.1e-28	45.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G16110.1	1.9e-25	42.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G13390.1	8.7e-23	37.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13390.2	8.7e-23	37.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02555.1	1.6e-21	42.11	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..124
None	No IPR available	PANTHER	PTHR33384	EXPRESSED PROTEIN	coord: 1..158
None	No IPR available	PANTHER	PTHR33384:SF18	BNAA07G24630D PROTEIN	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27853-RA	Carg27853-RA	mRNA