Carg27687 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27687
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein LATERAL ROOT PRIMORDIUM 1
Location	Carg_Chr11: 4497832 .. 4499226 (+)
RNA-Seq Expression	Carg27687
Synteny	Carg27687

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTTTTTTTCTCGCCGGAGATTCATCAGCTGTGGCTGCCGCACGCCGCCTTCCTTCCGATTCCGGTGCCTTTGCCGATTGGGTGGCTCCTCCCACCGCCGATGATGAACTTTCTCTCGGTTTCAATTCTGCTGCTGCCGTACCGGTTGCTAGGATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCACACGGCACCACCGCCGACGGACATGGTGGGTCTCATGGCCTCTGGCTATGGAGTTGGCCTTAGTGTTTTGCCTCTTCTTACTGGTCTTGCGCCGTCGAGTGTCGGAATTGAAGAGACTAATTTGATGATCAGCCGCGCGGCGGCGATGGCGGCGGCGGAGGTGGTGGGGTTCAATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGTTGGGACTTGCCATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCAGCAGCCCGTCGGAGAGAACGCCAAGTACTGAGCGCCGCCGCAGCCGCCGCCGCCGCCACTGGTGGGACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTGCTCAGGTGATATAAAATCTCCAAACCCTTTCTAGATCGAAATTGCATTTTCATCCCTCGATTTTTCAAACTATTTCATTTCGATCCCGATATTTTCAAATATTATACTTTAATCTCTAAATTGCGATAATTTAATCATTTACGTTCATAAGCTTCCACGAATGTCTATCTACATTAACAAAACAAAAAAAAAAAACGATATCCGCTAATTTTAAGAGTCAGATGAATCATGTACGACCTCTAAAAACATGCGAGTTTCAAGTAGAAAATAAAACAAGAGGTCTTTGTCTTAATGCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTACCGGAACAAGTACGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTAGTGGGGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAGGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCGACGTCGTCACCGATCATCGATCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGGGTTCCGGCTATGGTAATCCAATAAATTGA

mRNA sequence

GTTTTTTTTTTTCTCGCCGGAGATTCATCAGCTGTGGCTGCCGCACGCCGCCTTCCTTCCGATTCCGGTGCCTTTGCCGATTGGGTGGCTCCTCCCACCGCCGATGATGAACTTTCTCTCGGTTTCAATTCTGCTGCTGCCGTACCGGTTGCTAGGATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCACACGGCACCACCGCCGACGGACATGGTGGGTCTCATGGCCTCTGGCTATGGACCGCGCGGCGGCGATGGCGGCGGCGGAGGTGGTGGGGTTCAATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGTTGGGACTTGCCATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCAGCAGCCCGTCGGAGAGAACGCCAAGTACTGAGCGCCGCCGCAGCCGCCGCCGCCGCCACTGGTGGGACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTGCTCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTACCGGAACAAGTACGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTAGTGGGGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAGGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCGACGTCGTCACCGATCATCGATCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGGGTTCCGGCTATGGTAATCCAATAAATTGA

Coding sequence (CDS)

GTTTTTTTTTTTCTCGCCGGAGATTCATCAGCTGTGGCTGCCGCACGCCGCCTTCCTTCCGATTCCGGTGCCTTTGCCGATTGGGTGGCTCCTCCCACCGCCGATGATGAACTTTCTCTCGGTTTCAATTCTGCTGCTGCCGTACCGGTTGCTAGGATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCACACGGCACCACCGCCGACGGACATGGTGGGTCTCATGGCCTCTGGCTATGGACCGCGCGGCGGCGATGGCGGCGGCGGAGGTGGTGGGGTTCAATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGTTGGGACTTGCCATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCAGCAGCCCGTCGGAGAGAACGCCAAGTACTGAGCGCCGCCGCAGCCGCCGCCGCCGCCACTGGTGGGACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTGCTCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTACCGGAACAAGTACGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTAGTGGGGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAGGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCGACGTCGTCACCGATCATCGATCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGGGTTCCGGCTATGGTAATCCAATAAATTGA

Protein sequence

VFFFLAGDSSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGPRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN

Homology

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BLAST of Carg27687 vs. NCBI nr
Match: KAG7022130.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 657.9 bits (1696), Expect = 4.7e-185
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 1   VFFFLAGDSSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSST 60
           VFFFLAGDSSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSST
Sbjct: 1   VFFFLAGDSSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSST 60

Query: 61  RPIAGAYGHTAPPPTDMVGLMASGYGPRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNS 120
           RPIAGAYGHTAPPPTDMVGLMASGYGPRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNS
Sbjct: 61  RPIAGAYGHTAPPPTDMVGLMASGYGPRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNS 120

Query: 121 GVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAA 180
           GVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAA
Sbjct: 121 GVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAA 180

Query: 181 ATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVR 240
           ATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVR
Sbjct: 181 ATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVR 240

Query: 241 APAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLG 300
           APAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLG
Sbjct: 241 APAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLG 300

Query: 301 GGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN 341
           GGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN
Sbjct: 301 GGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN 340

[Close]

BLAST of Carg27687 vs. NCBI nr
Match: KAG6588219.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 616.7 bits (1589), Expect = 1.2e-172
Identity = 327/361 (90.58%), Postives = 330/361 (91.41%), Query Frame = 0


Query: 9   SSAVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSTSSTRPIAGAYG 68
           +S+VAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPS+SSTRPIAGAYG
Sbjct: 10  TSSVAAARRLPSDSGAFADWVAPPTADDELSLGFNSAAAVPVARMWPSSSSTRPIAGAYG 69

Query: 69  HTAPPPTDMVGLMASGY-----------------------------GPRGGDGGGGGGGV 128
           HTAPPPTDMVGLMASGY                             G  GGDGGGGGGGV
Sbjct: 70  HTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGGGGDGGGGGGGV 129

Query: 129 QFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKST 188
           QFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKST
Sbjct: 130 QFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKST 189

Query: 189 WVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSF 248
           WVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSF
Sbjct: 190 WVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSF 249

Query: 249 DTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGY 308
           DTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGY
Sbjct: 250 DTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGY 309

Query: 309 LYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPI 341
           LYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPI
Sbjct: 310 LYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPI 369

[Close]

BLAST of Carg27687 vs. NCBI nr
Match: XP_022933450.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 533.9 bits (1374), Expect = 1.0e-147
Identity = 284/314 (90.45%), Postives = 285/314 (90.76%), Query Frame = 0


Query: 53  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG-------------------------- 112
           MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG                          
Sbjct: 1   MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMI 60

Query: 113 PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK 172
            RGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK
Sbjct: 61  SRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK 120

Query: 173 SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTN 232
           SRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTN
Sbjct: 121 SRGFDCATHVKSTWVPAARRRERQVLS-AAAAAAATGGTSSGSTSGGKKPRLIASQTTTN 180

Query: 233 SHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQ 292
           SHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQ
Sbjct: 181 SHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQ 240

Query: 293 AVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG 341
           AVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
Sbjct: 241 AVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG 300

[Close]

BLAST of Carg27687 vs. NCBI nr
Match: XP_022974160.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 530.4 bits (1365), Expect = 1.1e-146
Identity = 283/316 (89.56%), Postives = 285/316 (90.19%), Query Frame = 0


Query: 53  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG-------------------------- 112
           MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYG                          
Sbjct: 1   MWPSSSSSRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGIAPSSVGIEETNLMI 60

Query: 113 --PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC 172
               GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC
Sbjct: 61  SRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC 120

Query: 173 CKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTT 232
           CKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTT
Sbjct: 121 CKSRGFDCATHVKSTWVPAARRRERQVLS-AAAAAAATGGTSSGSTSGGKKPRLIASQTT 180

Query: 233 TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA 292
           TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA
Sbjct: 181 TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA 240

Query: 293 YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG 341
           YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
Sbjct: 241 YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG 300

[Close]

BLAST of Carg27687 vs. NCBI nr
Match: XP_023531847.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 528.5 bits (1360), Expect = 4.3e-146
Identity = 282/316 (89.24%), Postives = 285/316 (90.19%), Query Frame = 0


Query: 53  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG-------------------------- 112
           MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYG                          
Sbjct: 1   MWPSSSSSRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMI 60

Query: 113 --PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC 172
               GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC
Sbjct: 61  SRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC 120

Query: 173 CKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTT 232
           CKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTT
Sbjct: 121 CKSRGFDCATHVKSTWVPAARRRERQVLS-AAAAAAATGGTSSGSTSGGKKPRLIASQTT 180

Query: 233 TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA 292
           TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA
Sbjct: 181 TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA 240

Query: 293 YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG 341
           YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
Sbjct: 241 YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG 300

[Close]

BLAST of Carg27687 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 8.4e-60
Identity = 135/223 (60.54%), Postives = 157/223 (70.40%), Query Frame = 0


Query: 114 GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS 173
           G  S  SG  TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQV+ 
Sbjct: 101 GSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM- 160

Query: 174 AAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSY 233
                A  T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+T S+     
Sbjct: 161 --PTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGG 220

Query: 234 KRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEARE 293
              +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +E
Sbjct: 221 GSREAWPGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKE 280

Query: 294 GFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG 329
           GFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Sbjct: 281 GFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGGG 317

[Close]

BLAST of Carg27687 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.8e-31
Identity = 92/217 (42.40%), Postives = 118/217 (54.38%), Query Frame = 0


Query: 124 TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATG 183
           +C DCGNQAKKDC H RCR+CCKSRGFDC+THV+STW+P ARRRERQ     + +    G
Sbjct: 93  SCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGG 152

Query: 184 GTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA 243
             S G+  GG          T    +S+S  P+ S      A +    A   P +V + A
Sbjct: 153 SGSGGAGGGGSSIPKRHRDPTLPGTSSSSRLPSHS------AGLEMGEA-SFPGEVSSDA 212

Query: 244 VFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG 303
           +F+CV+++ V+ GG G  +YAYQ  V IGGH+FKG LYD G E+          ++ GG 
Sbjct: 213 LFRCVKMSGVDDGGDG--QYAYQTTVNIGGHLFKGILYDQGPESS---------YMSGGS 272

Query: 304 DGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN 341
            G          SD   SSAG GGG       G+P N
Sbjct: 273 GG----------SDHQSSSAGGGGG-------GHPFN 274

[Close]

BLAST of Carg27687 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.5e-28
Identity = 86/210 (40.95%), Postives = 117/210 (55.71%), Query Frame = 0


Query: 116 SSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAA 175
           S   SG  +C DCGNQ+KKDC+H RCR+CCKSRG DC THVKSTWVPAA+RRERQ   + 
Sbjct: 111 SGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLST 170

Query: 176 AAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKL 235
                  GG+        ++   I +++T+ ++T   +  T   +               
Sbjct: 171 GQQPQQLGGSVP-----KRQRERIPARSTSMAYTRIPSNNTSGLE-----------VGNF 230

Query: 236 PEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLS 295
           P +V + AVF+CVRV++V+       EYAY+  V IGGHVFKG LYD G   R      S
Sbjct: 231 PPEVSSSAVFRCVRVSSVD---DEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGS 290

Query: 296 D-LHLGGGGDGGSTSSPIIDPSD-VYGSSA 324
             L+L   G   S+SSP +  ++ V GS++
Sbjct: 291 QPLNLITAGPSASSSSPNVSCNNGVVGSTS 301

[Close]

BLAST of Carg27687 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-27
Identity = 87/223 (39.01%), Postives = 114/223 (51.12%), Query Frame = 0


Query: 114 GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS 173
           GGS   SG  +C DCGNQAKKDC+H RCR+CCKSRGF+C+THV+STWVPAA+RRERQ   
Sbjct: 133 GGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQL 192

Query: 174 AAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAK 233
           A                    + +L   ++    H       + S         S     
Sbjct: 193 ATVQ----------------PQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVG 252

Query: 234 KLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYD--HGVEAREGF 293
             P +V + AVF+CVRV++VE    G  E+AYQ  V IGGH+FKG LYD   G     G+
Sbjct: 253 NFPAEVSSSAVFRCVRVSSVE---DGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGY 312

Query: 294 PMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSG 335
            +++      GG GG+    +I    V  ++A       GG G
Sbjct: 313 NVVAAGESSSGG-GGAQQLNLITAGSVTVATASSSTPNLGGIG 335

[Close]

BLAST of Carg27687 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.5e-27
Identity = 80/184 (43.48%), Postives = 106/184 (57.61%), Query Frame = 0


Query: 113 GGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVL 172
           GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER   
Sbjct: 113 GGFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRER--- 172

Query: 173 SAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSH-------TSTSNTPTRSFDTCSAA 232
             A  A+      SS  T   K+ R  +     +         ++ +NT   + ++ S  
Sbjct: 173 -LAQLASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGL 232

Query: 233 DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGV 290
           ++S    + LP +V +PA+F+CVRV+++E        YAYQ  V IGGH+FKG LYD G 
Sbjct: 233 EVS----QHLPPEVNSPAIFRCVRVSSIE-EDEDDQAYAYQTAVNIGGHIFKGILYDQGP 287

[Close]

BLAST of Carg27687 vs. ExPASy TrEMBL
Match: A0A6J1F4X3 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440862 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 5.0e-148
Identity = 284/314 (90.45%), Postives = 285/314 (90.76%), Query Frame = 0


Query: 53  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG-------------------------- 112
           MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG                          
Sbjct: 1   MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMI 60

Query: 113 PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK 172
            RGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK
Sbjct: 61  SRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK 120

Query: 173 SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTN 232
           SRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTN
Sbjct: 121 SRGFDCATHVKSTWVPAARRRERQVLS-AAAAAAATGGTSSGSTSGGKKPRLIASQTTTN 180

Query: 233 SHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQ 292
           SHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQ
Sbjct: 181 SHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQ 240

Query: 293 AVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG 341
           AVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
Sbjct: 241 AVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG 300

[Close]

BLAST of Carg27687 vs. ExPASy TrEMBL
Match: A0A6J1ID91 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472747 PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 5.5e-147
Identity = 283/316 (89.56%), Postives = 285/316 (90.19%), Query Frame = 0


Query: 53  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG-------------------------- 112
           MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYG                          
Sbjct: 1   MWPSSSSSRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGIAPSSVGIEETNLMI 60

Query: 113 --PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC 172
               GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC
Sbjct: 61  SRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC 120

Query: 173 CKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTT 232
           CKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTT
Sbjct: 121 CKSRGFDCATHVKSTWVPAARRRERQVLS-AAAAAAATGGTSSGSTSGGKKPRLIASQTT 180

Query: 233 TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA 292
           TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA
Sbjct: 181 TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA 240

Query: 293 YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG 341
           YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
Sbjct: 241 YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG 300

[Close]

BLAST of Carg27687 vs. ExPASy TrEMBL
Match: A0A6J1EZ30 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111440862 PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 1.0e-145
Identity = 282/314 (89.81%), Postives = 283/314 (90.13%), Query Frame = 0


Query: 53  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG-------------------------- 112
           MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG                          
Sbjct: 1   MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMI 60

Query: 113 PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK 172
            RGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK
Sbjct: 61  SRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK 120

Query: 173 SRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTN 232
           SRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTTTN
Sbjct: 121 SRGFDCATHVKSTWVPAARRRERQVLS-AAAAAAATGGTSSGSTSGGKKPRLIASQTTTN 180

Query: 233 SHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQ 292
           SHTSTSNTPTRSFDTCS  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQ
Sbjct: 181 SHTSTSNTPTRSFDTCS--DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQ 240

Query: 293 AVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG 341
           AVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG
Sbjct: 241 AVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRG 300

[Close]

BLAST of Carg27687 vs. ExPASy TrEMBL
Match: A0A6J1IFF1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472747 PE=3 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 1.1e-144
Identity = 281/316 (88.92%), Postives = 283/316 (89.56%), Query Frame = 0


Query: 53  MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYG-------------------------- 112
           MWPS+SS+RPIAGAYGHTAPPPTDMVGLMASGYG                          
Sbjct: 1   MWPSSSSSRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGIAPSSVGIEETNLMI 60

Query: 113 --PRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC 172
               GGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC
Sbjct: 61  SRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC 120

Query: 173 CKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTT 232
           CKSRGFDCATHVKSTWVPAARRRERQVLS AAAAAAATGGTSSGSTSGGKKPRLIASQTT
Sbjct: 121 CKSRGFDCATHVKSTWVPAARRRERQVLS-AAAAAAATGGTSSGSTSGGKKPRLIASQTT 180

Query: 233 TNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA 292
           TNSHTSTSNTPTRSFDTCS  DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA
Sbjct: 181 TNSHTSTSNTPTRSFDTCS--DMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYA 240

Query: 293 YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG 341
           YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG
Sbjct: 241 YQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG 300

[Close]

BLAST of Carg27687 vs. ExPASy TrEMBL
Match: A0A5A7UJ85 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00230 PE=3 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.8e-137
Identity = 279/367 (76.02%), Postives = 299/367 (81.47%), Query Frame = 0


Query: 3   FFLAGDSSAVAAARRLPSDSGAFADWVAPPTA--DDELSLGFNSAAAVPVARMWPSTSST 62
           F  A DS AVAAARRLPSDSGAFADWVAPP+A   DELSLGFNSA+++P  RMWP   S+
Sbjct: 10  FLSARDSPAVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNSASSIPSPRMWP---SS 69

Query: 63  RPIAGAYGHTAPPPTDMVGLMASGYG--------------------------PRGGDGGG 122
           RP+   Y HT  P  DMVGLMASG+G                           RGG G  
Sbjct: 70  RPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGGGDE 129

Query: 123 GGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCAT 182
           GGGG+QF+GNN DGFG LGGGSSLNSGVGTCHDCGNQAKKDC+HRRCRSCCKSRGFDC+T
Sbjct: 130 GGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCST 189

Query: 183 HVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNT 242
           HVKSTWVPAARRRERQ++ AA+ AAA  GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNT
Sbjct: 190 HVKSTWVPAARRRERQMMGAASDAAA--GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNT 249

Query: 243 PTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGS-GGNEYAYQAVVKIGG 302
           PT SFD  SAADMS K+AKKLPEQ+RAPAVFKCVRVTAVEGG S GGNEYAYQAVVKIGG
Sbjct: 250 PTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGG 309

Query: 303 HVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGS 341
           HVFKGYLYDHGVEAR+GFP +S+LHL   GDGGSTSSP+IDPSDVYGSSA RGGGLAGGS
Sbjct: 310 HVFKGYLYDHGVEARDGFPTMSNLHL---GDGGSTSSPVIDPSDVYGSSATRGGGLAGGS 368

[Close]

BLAST of Carg27687 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 232.3 bits (591), Expect = 6.0e-61
Identity = 135/223 (60.54%), Postives = 157/223 (70.40%), Query Frame = 0


Query: 114 GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS 173
           G  S  SG  TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQV+ 
Sbjct: 101 GSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM- 160

Query: 174 AAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSY 233
                A  T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+T S+     
Sbjct: 161 --PTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGG 220

Query: 234 KRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEARE 293
              +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +E
Sbjct: 221 GSREAWPGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKE 280

Query: 294 GFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG 329
           GFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Sbjct: 281 GFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGGG 317

[Close]

BLAST of Carg27687 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 232.3 bits (591), Expect = 6.0e-61
Identity = 135/223 (60.54%), Postives = 157/223 (70.40%), Query Frame = 0


Query: 114 GGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLS 173
           G  S  SG  TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQV+ 
Sbjct: 101 GSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM- 160

Query: 174 AAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCSAADMSY 233
                A  T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+T S+     
Sbjct: 161 --PTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGG 220

Query: 234 KRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEARE 293
              +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD G+E +E
Sbjct: 221 GSREAWPGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKE 280

Query: 294 GFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGGG 329
           GFP +SDLHLGG     +G S S+PI+DP + VYG   G GGG
Sbjct: 281 GFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGGG 317

[Close]

BLAST of Carg27687 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 225.3 bits (573), Expect = 7.3e-59
Identity = 181/409 (44.25%), Postives = 211/409 (51.59%), Query Frame = 0


Query: 7   GDSSAVAAARR--LP-SDSGAFADWVA----PPTADDELSLGFN-----------SAAAV 66
           G   +VA  RR  LP SDSGAF DW A    P  A ++LSLGFN           SA+  
Sbjct: 4   GALCSVATTRRHNLPTSDSGAFTDWAATTTTPSRATEDLSLGFNAGSSVIHGGLGSASVA 63

Query: 67  PVARMWPSTSSTRPIAGAYGHTAPPPTDMVG-----LMASGYGPRGGDGGGGG------- 126
                WP  SS R   G     A     MVG     L+A  Y  +      G        
Sbjct: 64  AGVPSWPPGSSVR--YGLPSSAAATEMGMVGLRDVFLVAPAYHHQNAGVISGSDHMNSNA 123

Query: 127 -------------------------GGVQFHGNN----------------FDGFGFLGGG 186
                                      + F GNN                F        G
Sbjct: 124 AAAAALGVGVIPLLTAGTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVG 183

Query: 187 SSLN--------SGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRR 246
           +S N        SG  TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRR
Sbjct: 184 TSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRR 243

Query: 247 ERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTCS 306
           ERQV+      A  T G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+T S
Sbjct: 244 ERQVM---PTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSS 303

Query: 307 AADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDH 329
           +        +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKIGGHVFKG+LYD 
Sbjct: 304 SRQDGGGSREAWPGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKIGGHVFKGFLYDQ 363

[Close]

BLAST of Carg27687 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-32
Identity = 92/217 (42.40%), Postives = 118/217 (54.38%), Query Frame = 0


Query: 124 TCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATG 183
           +C DCGNQAKKDC H RCR+CCKSRGFDC+THV+STW+P ARRRERQ     + +    G
Sbjct: 93  SCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGG 152

Query: 184 GTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPA 243
             S G+  GG          T    +S+S  P+ S      A +    A   P +V + A
Sbjct: 153 SGSGGAGGGGSSIPKRHRDPTLPGTSSSSRLPSHS------AGLEMGEA-SFPGEVSSDA 212

Query: 244 VFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG 303
           +F+CV+++ V+ GG G  +YAYQ  V IGGH+FKG LYD G E+          ++ GG 
Sbjct: 213 LFRCVKMSGVDDGGDG--QYAYQTTVNIGGHLFKGILYDQGPESS---------YMSGGS 272

Query: 304 DGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGNPIN 341
            G          SD   SSAG GGG       G+P N
Sbjct: 273 GG----------SDHQSSSAGGGGG-------GHPFN 274

[Close]

BLAST of Carg27687 vs. TAIR 10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-29
Identity = 86/210 (40.95%), Postives = 117/210 (55.71%), Query Frame = 0


Query: 116 SSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAA 175
           S   SG  +C DCGNQ+KKDC+H RCR+CCKSRG DC THVKSTWVPAA+RRERQ   + 
Sbjct: 111 SGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLST 170

Query: 176 AAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKL 235
                  GG+        ++   I +++T+ ++T   +  T   +               
Sbjct: 171 GQQPQQLGGSVP-----KRQRERIPARSTSMAYTRIPSNNTSGLE-----------VGNF 230

Query: 236 PEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLS 295
           P +V + AVF+CVRV++V+       EYAY+  V IGGHVFKG LYD G   R      S
Sbjct: 231 PPEVSSSAVFRCVRVSSVD---DEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGS 290

Query: 296 D-LHLGGGGDGGSTSSPIIDPSD-VYGSSA 324
             L+L   G   S+SSP +  ++ V GS++
Sbjct: 291 QPLNLITAGPSASSSSPNVSCNNGVVGSTS 301

The following BLAST results are available for this feature:

BLAST of Carg27687 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022130.1	4.7e-185	100.00	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6588219.1	1.2e-172	90.58	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022933450.1	1.0e-147	90.45	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022974160.1	1.1e-146	89.56	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima]	[more]
XP_023531847.1	4.3e-146	89.24	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27687 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	8.4e-60	60.54	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	2.8e-31	42.40	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9XGX0	6.5e-28	40.95	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
Q9SD40	1.9e-27	39.01	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9LQZ5	2.5e-27	43.48	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]

BLAST of Carg27687 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4X3	5.0e-148	90.45	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1ID91	5.5e-147	89.56	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1EZ30	1.0e-145	89.81	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1IFF1	1.1e-144	88.92	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7UJ85	1.8e-137	76.02	Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Carg27687 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.2	6.0e-61	60.54	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	6.0e-61	60.54	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.4	7.3e-59	44.25	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	2.0e-32	42.40	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	4.6e-29	40.95	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 124..166 e-value: 3.0E-25 score: 85.8
None	No IPR available	PFAM	PF05142	DUF702	coord: 124..286 e-value: 1.3E-57 score: 194.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..219
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 112..340
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 235..285 e-value: 3.8E-24 score: 82.4
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 112..340

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27687-RA	Carg27687-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding