Carg27601 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27601
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Carg_Chr11: 3410039 .. 3411190 (-)
RNA-Seq Expression	Carg27601
Synteny	Carg27601

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACATATCAAAGCTGTTCACCAATCTTGTTTTATATCACTGAAGCTCTCCGGCCATGGCCCTCTCCATTTCTTCCACTGCGCTCTCAACTCTCCCAATCAGGTAAACCCAAAATCCCATTTATTTCACTAATTTCTCCAATTTTTCATTCTCAAATTTCTGTTTCTCAGCAGAGAATCATCCCACAGCCACCATAAAGCACTTAATTTCCCCGGAAAATTCCCAAAATACAATCTCCGGCGAGGTTCTACTCATCTGAACGCTGCAAAATCCGGCGTATCTAGCGTCTGTGAACCGCTCCCTCCAGATCGACCCCTCTGGTTCCCCGGCAGCACCCCCCCTGAGTGGCTCGACGGCAGGTTAATCCTAACTTCCCCACTCCTAATTCGTTCTATCTTGATGAATGTTTAAGCTCTTTCTCGCTTTGCAGCCTTCCAGGCGATTTCGGGTTCGACCCACTTGGATTGGGTACGCCCTTCTCTCGTTCTTTGATTCATTTTAAATTTCTTTGTTGCTGTTCGAAAATTTCATACTCTGTGATGGTCAGGATCCGACCCAGAGCTCCTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCGAGATGGGCAATGCTCGCAGTGGCCGGAATTCTCCTCCCCGAATGGTTCGAGAGCTTAGGACTGATTCAAAATTTCTCCTGGTACGACGCCGGAACGCGAGAATACTTTGCAGACCCGACGACATTGCTGGTGGCTCAATTGGGTCTAATGGGGTGGGTAGAGGGGCGGCGGTGGGCGGACATGGTTAACCCAGGCAGCGTCGACGTGGACCTCAAACTACCTCACAAGAAAAAGCCAACACCGGACGTGGGCTACCCCGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGATCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATCAAGAACGGGCGGCTGGCGATGCTGGCGTTTGTCGGACTGTGGTTTCAGGCTATTTATACAGGGCAGGGTCCGCTGGAGAATCTCGCCGCCCACGTTGCCGATCCCGGCCACTGCAACATCTTCTCGGTAACGACAGTACTTGCCATGAATCTTGGGTCTTAGCTATGGCTAATGGAAATTGTTGTTCTTGCAGGCATTCAGCTCCGGTGGAATTTGA

mRNA sequence

TACATATCAAAGCTGTTCACCAATCTTGTTTTATATCACTGAAGCTCTCCGGCCATGGCCCTCTCCATTTCTTCCACTGCGCTCTCAACTCTCCCAATCAGCAGAGAATCATCCCACAGCCACCATAAAGCACTTAATTTCCCCGGAAAATTCCCAAAATACAATCTCCGGCGAGGTTCTACTCATCTGAACGCTGCAAAATCCGGCGTATCTAGCGTCTGTGAACCGCTCCCTCCAGATCGACCCCTCTGGTTCCCCGGCAGCACCCCCCCTGAGTGGCTCGACGGCAGCCTTCCAGGCGATTTCGGGTTCGACCCACTTGGATTGGGATCCGACCCAGAGCTCCTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCGAGATGGGCAATGCTCGCAGTGGCCGGAATTCTCCTCCCCGAATGGTTCGAGAGCTTAGGACTGATTCAAAATTTCTCCTGGTACGACGCCGGAACGCGAGAATACTTTGCAGACCCGACGACATTGCTGGTGGCTCAATTGGGTCTAATGGGGTGGGTAGAGGGGCGGCGGTGGGCGGACATGGTTAACCCAGGCAGCGTCGACGTGGACCTCAAACTACCTCACAAGAAAAAGCCAACACCGGACGTGGGCTACCCCGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGATCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATCAAGAACGGGCGGCTGGCGATGCTGGCGTTTGTCGGACTGTGGTTTCAGGCTATTTATACAGGGCAGGGTCCGCTGGAGAATCTCGCCGCCCACGTTGCCGATCCCGGCCACTGCAACATCTTCTCGGCATTCAGCTCCGGTGGAATTTGA

Coding sequence (CDS)

ATGGCCCTCTCCATTTCTTCCACTGCGCTCTCAACTCTCCCAATCAGCAGAGAATCATCCCACAGCCACCATAAAGCACTTAATTTCCCCGGAAAATTCCCAAAATACAATCTCCGGCGAGGTTCTACTCATCTGAACGCTGCAAAATCCGGCGTATCTAGCGTCTGTGAACCGCTCCCTCCAGATCGACCCCTCTGGTTCCCCGGCAGCACCCCCCCTGAGTGGCTCGACGGCAGCCTTCCAGGCGATTTCGGGTTCGACCCACTTGGATTGGGATCCGACCCAGAGCTCCTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCGAGATGGGCAATGCTCGCAGTGGCCGGAATTCTCCTCCCCGAATGGTTCGAGAGCTTAGGACTGATTCAAAATTTCTCCTGGTACGACGCCGGAACGCGAGAATACTTTGCAGACCCGACGACATTGCTGGTGGCTCAATTGGGTCTAATGGGGTGGGTAGAGGGGCGGCGGTGGGCGGACATGGTTAACCCAGGCAGCGTCGACGTGGACCTCAAACTACCTCACAAGAAAAAGCCAACACCGGACGTGGGCTACCCCGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGATCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATCAAGAACGGGCGGCTGGCGATGCTGGCGTTTGTCGGACTGTGGTTTCAGGCTATTTATACAGGGCAGGGTCCGCTGGAGAATCTCGCCGCCCACGTTGCCGATCCCGGCCACTGCAACATCTTCTCGGCATTCAGCTCCGGTGGAATTTGA

Protein sequence

MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGGI

Homology

[Close]

BLAST of Carg27601 vs. NCBI nr
Match: KAG7021985.1 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 577.0 bits (1486), Expect = 8.4e-161
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP
Sbjct: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 271
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 270

[Close]

BLAST of Carg27601 vs. NCBI nr
Match: XP_022929235.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 575.9 bits (1483), Expect = 1.9e-160
Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSISSTALSTLPISRESSHSHH+ALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP
Sbjct: 1   MALSISSTALSTLPISRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 271
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 270

[Close]

BLAST of Carg27601 vs. NCBI nr
Match: XP_022929243.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 569.7 bits (1467), Expect = 1.3e-158
Identity = 268/270 (99.26%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSISSTALSTLPI RESSHSHH+ALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP
Sbjct: 1   MALSISSTALSTLPI-RESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 271
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 269

[Close]

BLAST of Carg27601 vs. NCBI nr
Match: KAG6588096.1 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 568.9 bits (1465), Expect = 2.3e-158
Identity = 268/270 (99.26%), Postives = 268/270 (99.26%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSISSTALSTLPI RESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP
Sbjct: 1   MALSISSTALSTLPI-RESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLI NFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIHNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 271
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 269

[Close]

BLAST of Carg27601 vs. NCBI nr
Match: XP_023529386.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 566.2 bits (1458), Expect = 1.5e-157
Identity = 263/270 (97.41%), Postives = 267/270 (98.89%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSISS ALST+PISRESSH+HH+ALNFPGKFPKYNLRRGSTHL AAKSGVSSVCEPLP
Sbjct: 1   MALSISSAALSTIPISRESSHTHHRALNFPGKFPKYNLRRGSTHLKAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADP TLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIQNFSWYDAGTREYFADPMTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKK+PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKRPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 271
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 270

[Close]

BLAST of Carg27601 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 5.9e-109
Identity = 185/269 (68.77%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSG--VSSVCEP 60
           MA +I+S   STL +S     +  +             R     L   ++G  VSSVCEP
Sbjct: 1   MAFAIASALTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEP 60

Query: 61  LPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAG 120
           LPPDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDP+ LKWFAQAEL+H+RWAMLAV G
Sbjct: 61  LPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120

Query: 121 ILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDV 180
           I++PE  E LG I+NFSWYDAG+REYFAD TTL VAQ+ LMGW EGRRWAD++ PGSVD+
Sbjct: 121 IIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDI 180

Query: 181 DLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQA 240
           + K PHK  P PDVGYPGG WFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+G  FQA
Sbjct: 181 EPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240

Query: 241 IYTGQGPLENLAAHVADPGHCNIFSAFSS 268
            YT Q P+ENL AH+ADPGHCN+FSAF+S
Sbjct: 241 TYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]

BLAST of Carg27601 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 4.1e-86
Identity = 154/272 (56.62%), Postives = 188/272 (69.12%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSH------HKALNFPGKFPKYNLRRGSTHLNAAKSGVSS 60
           MA + +S+ ++ +  S  SS  +       KA    GK  +  + +    + +    VS+
Sbjct: 1   MASACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGK--RLRVSKFIAPVGSRSVAVSA 60

Query: 61  VCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAML 120
           V     PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE LKW AQAEL+H+RWAML
Sbjct: 61  VA--ADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAML 120

Query: 121 AVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPG 180
             AGI +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PG
Sbjct: 121 GAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPG 180

Query: 181 SVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGL 240
            V+ D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G 
Sbjct: 181 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGA 240

Query: 241 WFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 267
           WFQ IYTG GP++NL AH+ADPGH  IF+AFS
Sbjct: 241 WFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Carg27601 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.8e-85
Identity = 136/206 (66.02%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRP+WFPGSTPPEWLDGSLPGDFGFDPLGL SDP+ LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFS 267
           TG GP++NL AH+ADPGH  IF+AF+
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of Carg27601 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-84
Identity = 149/272 (54.78%), Postives = 180/272 (66.18%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSH------HKALNFPGKFPKYNLRRGSTHLNAAKSGVSS 60
           MA + +S+ ++ +  S  SS  +       KA    G+     LR             ++
Sbjct: 1   MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGR----RLRVSKYSTTPTARSATT 60

Query: 61  VCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAML 120
           VC    PDRPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE L+W  QAEL+H RWAML
Sbjct: 61  VCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAML 120

Query: 121 AVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPG 180
             AGI +PE    +G++   SWY AG +EYF D TTL + +L L+GW EGRRWAD++ PG
Sbjct: 121 GAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPG 180

Query: 181 SVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGL 240
            V+ D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G 
Sbjct: 181 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGA 240

Query: 241 WFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 267
           WFQ IYTG GP++NL AH+ADPGH  IF+AFS
Sbjct: 241 WFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Carg27601 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.0e-52
Identity = 103/201 (51.24%), Postives = 127/201 (63.18%), Query Frame = 0


Query: 66  WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWF 125
           W PG   P++L GSL GD GFDPLGL  DPE LKWF QAEL++ RWAML VAG+LLPE F
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 126 ESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLKLPHK 185
             +G+I    WYDAG  +YFA  +TL V +  L  +VE RRW D+ NPGSV+ D      
Sbjct: 117 TKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 176

Query: 186 KKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 245
             P  +VGYPGG  F+P+ +      P    + KE+ NGRLAMLAF+G   Q   TG+GP
Sbjct: 177 SLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 236

Query: 246 LENLAAHVADPGHCNIFSAFS 267
            ENL  H++DP H  I   F+
Sbjct: 237 FENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Carg27601 vs. ExPASy TrEMBL
Match: A0A6J1ETS8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435884 PE=3 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 9.1e-161
Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSISSTALSTLPISRESSHSHH+ALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP
Sbjct: 1   MALSISSTALSTLPISRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 271
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 270

[Close]

BLAST of Carg27601 vs. ExPASy TrEMBL
Match: A0A6J1ERI7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435884 PE=3 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 6.5e-159
Identity = 268/270 (99.26%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSISSTALSTLPI RESSHSHH+ALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP
Sbjct: 1   MALSISSTALSTLPI-RESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 271
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 269

[Close]

BLAST of Carg27601 vs. ExPASy TrEMBL
Match: A0A6J1HS79 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467340 PE=3 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 6.1e-157
Identity = 265/270 (98.15%), Postives = 268/270 (99.26%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSISSTALS+LPISRESSHS H+ALNFPGKFPKYNLRRGS+HLNAAKSGVSSVCEPLP
Sbjct: 17  MALSISSTALSSLPISRESSHS-HRALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLP 76

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 77  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 136

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPG VDVDL
Sbjct: 137 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDL 196

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 197 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 256

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 271
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 257 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 285

[Close]

BLAST of Carg27601 vs. ExPASy TrEMBL
Match: A0A6J1HWP6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467340 PE=3 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.4e-155
Identity = 264/270 (97.78%), Postives = 267/270 (98.89%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSISSTALS+LPI RESSHS H+ALNFPGKFPKYNLRRGS+HLNAAKSGVSSVCEPLP
Sbjct: 17  MALSISSTALSSLPI-RESSHS-HRALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLP 76

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 77  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 136

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPG VDVDL
Sbjct: 137 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDL 196

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 197 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 256

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 271
           TGQGPLENLAAHVADPGHCNIFSAFSSGGI
Sbjct: 257 TGQGPLENLAAHVADPGHCNIFSAFSSGGI 284

[Close]

BLAST of Carg27601 vs. ExPASy TrEMBL
Match: A0A6J1D327 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016538 PE=3 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 4.7e-141
Identity = 241/268 (89.93%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLP 60
           MALSI+STALS   +    SH+ H    FPGKF K+ LRR  +HLNAAKSGVSSVCEPLP
Sbjct: 1   MALSIASTALSVSTLPIRESHTRH----FPGKFTKH-LRRDYSHLNAAKSGVSSVCEPLP 60

Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL
Sbjct: 61  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           LPEWFESLGLI+NFSWYDAGTREYFADPTTLLVAQLGLMGW EGRRWADMVNPGSVDVDL
Sbjct: 121 LPEWFESLGLIENFSWYDAGTREYFADPTTLLVAQLGLMGWAEGRRWADMVNPGSVDVDL 180

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKKP PDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 181 KLPHKKKPAPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSG 269
           TGQGPLENLAAH+ADPGHCNIFSAF SG
Sbjct: 241 TGQGPLENLAAHLADPGHCNIFSAFRSG 263

[Close]

BLAST of Carg27601 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 395.2 bits (1014), Expect = 4.2e-110
Identity = 185/269 (68.77%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 1   MALSISSTALSTLPISRESSHSHHKALNFPGKFPKYNLRRGSTHLNAAKSG--VSSVCEP 60
           MA +I+S   STL +S     +  +             R     L   ++G  VSSVCEP
Sbjct: 1   MAFAIASALTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEP 60

Query: 61  LPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAG 120
           LPPDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDP+ LKWFAQAEL+H+RWAMLAV G
Sbjct: 61  LPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120

Query: 121 ILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDV 180
           I++PE  E LG I+NFSWYDAG+REYFAD TTL VAQ+ LMGW EGRRWAD++ PGSVD+
Sbjct: 121 IIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDI 180

Query: 181 DLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQA 240
           + K PHK  P PDVGYPGG WFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+G  FQA
Sbjct: 181 EPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240

Query: 241 IYTGQGPLENLAAHVADPGHCNIFSAFSS 268
            YT Q P+ENL AH+ADPGHCN+FSAF+S
Sbjct: 241 TYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]

BLAST of Carg27601 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 315.1 bits (806), Expect = 5.5e-86
Identity = 136/206 (66.02%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 61  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 120
           PDRP+WFPGSTPPEWLDGSLPGDFGFDPLGL SDP+ LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 121 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDL 180
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 181 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFS 267
           TG GP++NL AH+ADPGH  IF+AF+
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of Carg27601 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 208.4 bits (529), Expect = 7.3e-54
Identity = 103/201 (51.24%), Postives = 127/201 (63.18%), Query Frame = 0


Query: 66  WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWF 125
           W PG   P++L GSL GD GFDPLGL  DPE LKWF QAEL++ RWAML VAG+LLPE F
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 126 ESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLKLPHK 185
             +G+I    WYDAG  +YFA  +TL V +  L  +VE RRW D+ NPGSV+ D      
Sbjct: 117 TKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 176

Query: 186 KKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 245
             P  +VGYPGG  F+P+ +      P    + KE+ NGRLAMLAF+G   Q   TG+GP
Sbjct: 177 SLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 236

Query: 246 LENLAAHVADPGHCNIFSAFS 267
            ENL  H++DP H  I   F+
Sbjct: 237 FENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Carg27601 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 176.4 bits (446), Expect = 3.1e-44
Identity = 91/221 (41.18%), Postives = 132/221 (59.73%), Query Frame = 0


Query: 45  LNAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQA 104
           +++ K+    +   +  +R  W PG  PP +LDG+L GD+GFDPLGLG DPE LKW+ QA
Sbjct: 28  ISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQA 87

Query: 105 ELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREY-FADPTTLLVAQLGLMGWVE 164
           EL+H+R+AML VAGIL  +   + G+     WY+AG  ++ FA   TL+V Q  LMG+ E
Sbjct: 88  ELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAE 147

Query: 165 GRRWADMVNPGSVDVDLKLPHKKKPT---PDVGYPGGFWFDPMMWGRGSPEPVMVLRTKE 224
            +R+ D V+PGS   +       +      + GYPGG   +P+   +   +     + KE
Sbjct: 148 TKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNAHDWKLKE 207

Query: 225 IKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNI 262
           IKNGRLAM+A +G + QA  T  GP++NL  H+++P H  I
Sbjct: 208 IKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247

[Close]

BLAST of Carg27601 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 176.4 bits (446), Expect = 3.1e-44
Identity = 91/221 (41.18%), Postives = 132/221 (59.73%), Query Frame = 0


Query: 45  LNAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQA 104
           +++ K+    +   +  +R  W PG  PP +LDG+L GD+GFDPLGLG DPE LKW+ QA
Sbjct: 28  ISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQA 87

Query: 105 ELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREY-FADPTTLLVAQLGLMGWVE 164
           EL+H+R+AML VAGIL  +   + G+     WY+AG  ++ FA   TL+V Q  LMG+ E
Sbjct: 88  ELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAE 147

Query: 165 GRRWADMVNPGSVDVDLKLPHKKKPT---PDVGYPGGFWFDPMMWGRGSPEPVMVLRTKE 224
            +R+ D V+PGS   +       +      + GYPGG   +P+   +   +     + KE
Sbjct: 148 TKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNAHDWKLKE 207

Query: 225 IKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNI 262
           IKNGRLAM+A +G + QA  T  GP++NL  H+++P H  I
Sbjct: 208 IKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247

The following BLAST results are available for this feature:

BLAST of Carg27601 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021985.1	8.4e-161	100.00	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucurbita argyro...	[more]
XP_022929235.1	1.9e-160	99.63	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucur...	[more]
XP_022929243.1	1.3e-158	99.26	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]
KAG6588096.1	2.3e-158	99.26	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic, partial [Cucurbi...	[more]
XP_023529386.1	1.5e-157	97.41	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucur...	[more]

BLAST of Carg27601 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCQ4	5.9e-109	68.77	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
P13869	4.1e-86	56.62	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
Q9SYW8	7.8e-85	66.02	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P10708	1.3e-84	54.78	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
P27521	1.0e-52	51.24	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Carg27601 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETS8	9.1e-161	99.63	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1ERI7	6.5e-159	99.26	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HS79	6.1e-157	98.15	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1HWP6	4.4e-155	97.78	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1D327	4.7e-141	89.93	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Carg27601 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19150.1	4.2e-110	68.77	photosystem I light harvesting complex gene 6	[more]
AT3G61470.1	5.5e-86	66.02	photosystem I light harvesting complex gene 2	[more]
AT3G47470.1	7.3e-54	51.24	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	3.1e-44	41.18	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	3.1e-44	41.18	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 72..238 e-value: 5.7E-52 score: 176.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 73..258 e-value: 4.4E-68 score: 230.9
None	No IPR available	PANTHER	PTHR21649:SF5	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC	coord: 1..265
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 62..265
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27601-RA	Carg27601-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding