Carg27592 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27592
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionexosome complex exonuclease RRP44 homolog A-like
LocationCarg_Chr11: 8462520 .. 8463664 (+)
RNA-Seq ExpressionCarg27592
SyntenyCarg27592
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTCACTGCTGTAAATTGTTTCCAGACTTGAATTATCGACATAGAAACGCCCAGATGGCTGGCCGGGCTTCAGTAGAGCTTCATACTTTAATTTACTTCAAAAAACGGTATGTCAGCTTAACATGTTCATTACTCATGTGCATGACCCAAACGTTTTCACGTCCGCTTGTTTTTTTCTCGTCTAATCTAAAGAAATTTCATCTCTTGTTGATGTAGGCCTACGGACACGGAGGCCAGAATTGTGAAGATAAGATCAAACGGTTTTATAGTATTTGTTCCCAAGTATGTTTCCTAAGCCTATGGTTTTATAGTATTTCTACCTTTCACTTTGATTAATATGACTTGAAGGACTTCGAGGGAATAGGTTAAAGTAATAGGCACCTATCTTAAGAGTAAACGTAGTAGGATCAGATGTTTGTCCCGTGAGAATAGTTGACATGCATGCAAGTTAGCCAGGTCGTTTACGGATAAAAAACATAGGTTGCCCTTTTTGTCTGCGTGTGTGTTGGGGGTTGTGAATTTGGATGCGATTGAGTTTTCGAGTTCAAACAAGGGTCCACAAAATCGTGTAGGTCAGATGGTTACATGTAGAGGTCAGTTGATCCAGACACTCGTAGATACAAAATTAAAATGTTCACTTACACAATAGAACACGTTTTTGTGTCGAACATCCCAATAATGACATTATTTTGCTTTGGTTTCTCAGATTTGGTATCGAGGGACCAATATACTTGTCAGCAAGAGGTGAGAAGCAAAATGGAGAATGGTTGGTGGATGAGCAAGACCAGAAGATCAAAAGGTTGGATGGTAGCATAACATACAACGTTCTACAGGCAGTGAGAATTCACATGGAGGTTGTGGAGCCCCAACCAAATCGACCAAAGCTTCAGCTTAAACTTATTACTTAATGTCTCCAAAACCACTTGTGTAAAAGGTAGAGTTCTTTTGTTTTTTTTAAAGCTTGCGAGTTTACAGAGTTCATGTTGTGAGAGTAGATAGAGCTGCAGCGCTGCTAAAACAGATTGCTGGTAGAAATGTATATTTATTTTTATTATAAATAATTTACCACTAATTTTTTGAACTCAGATGTGTAATTTGTTTAAAATGTTTCAATTTCTTTTTGATGTGTTCAAGTTTAT

mRNA sequence

ATGGATGTTCACTGCTGTAAATTGTTTCCAGACTTGAATTATCGACATAGAAACGCCCAGATGGCTGGCCGGGCTTCAGTAGAGCTTCATACTTTAATTTACTTCAAAAAACGGCCTACGGACACGGAGGCCAGAATTGTGAAGATAAGATCAAACGGTTTTATAGTATTTGTTCCCAAATTTGGTATCGAGGGACCAATATACTTGTCAGCAAGAGGTGAGAAGCAAAATGGAGAATGGTTGGTGGATGAGCAAGACCAGAAGATCAAAAGGTTGGATGGTAGCATAACATACAACGTTCTACAGGCAGTGAGAATTCACATGGAGGTTGTGGAGCCCCAACCAAATCGACCAAAGCTTCAGCTTAAACTTATTACTTAATGTCTCCAAAACCACTTGTGTAAAAGGTAGAGTTCTTTTGTTTTTTTTAAAGCTTGCGAGTTTACAGAGTTCATGTTGTGAGAGTAGATAGAGCTGCAGCGCTGCTAAAACAGATTGCTGGTAGAAATGTATATTTATTTTTATTATAAATAATTTACCACTAATTTTTTGAACTCAGATGTGTAATTTGTTTAAAATGTTTCAATTTCTTTTTGATGTGTTCAAGTTTAT

Coding sequence (CDS)

ATGGATGTTCACTGCTGTAAATTGTTTCCAGACTTGAATTATCGACATAGAAACGCCCAGATGGCTGGCCGGGCTTCAGTAGAGCTTCATACTTTAATTTACTTCAAAAAACGGCCTACGGACACGGAGGCCAGAATTGTGAAGATAAGATCAAACGGTTTTATAGTATTTGTTCCCAAATTTGGTATCGAGGGACCAATATACTTGTCAGCAAGAGGTGAGAAGCAAAATGGAGAATGGTTGGTGGATGAGCAAGACCAGAAGATCAAAAGGTTGGATGGTAGCATAACATACAACGTTCTACAGGCAGTGAGAATTCACATGGAGGTTGTGGAGCCCCAACCAAATCGACCAAAGCTTCAGCTTAAACTTATTACTTAA

Protein sequence

MDVHCCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT
Homology
[Close]
BLAST of Carg27592 vs. NCBI nr
Match: KAG7022442.1 (Exosome complex exonuclease RRP44-like A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.3 bits (669), Expect = 2.1e-66
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MDVHCCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPK 60
           MDVHCCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPK
Sbjct: 1   MDVHCCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPK 60

Query: 61  FGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKL 120
           FGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKL
Sbjct: 61  FGIEGPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKL 120

Query: 121 QLKLIT 127
           QLKLIT
Sbjct: 121 QLKLIT 126

[Close]
BLAST of Carg27592 vs. NCBI nr
Match: XP_023530073.1 (exosome complex exonuclease RRP44 homolog A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.2 bits (596), Expect = 6.2e-58
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGR+SVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS
Sbjct: 821 NLNYRHRNAQMAGRSSVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 880

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 127
           ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT
Sbjct: 881 ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 936

[Close]
BLAST of Carg27592 vs. NCBI nr
Match: XP_022927909.1 (exosome complex exonuclease RRP44 homolog A-like [Cucurbita moschata])

HSP 1 Score: 233.4 bits (594), Expect = 1.1e-57
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPI+LS
Sbjct: 821 NLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIHLS 880

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 127
           ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT
Sbjct: 881 ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 936

[Close]
BLAST of Carg27592 vs. NCBI nr
Match: KAG6588646.1 (Exosome complex exonuclease RRP44-like A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.9 bits (590), Expect = 3.1e-57
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS
Sbjct: 821 NLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 880

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 127
           ARGEKQN EWLVDEQDQKIK+LDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT
Sbjct: 881 ARGEKQNAEWLVDEQDQKIKKLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 936

[Close]
BLAST of Carg27592 vs. NCBI nr
Match: XP_022988682.1 (exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 6.9e-57
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS
Sbjct: 821 NLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 880

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 127
           ARGEKQNGEWLVDEQDQK+K+LDGSITYNVLQAVRIHMEVVEPQPNRPKLQL LIT
Sbjct: 881 ARGEKQNGEWLVDEQDQKMKKLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLTLIT 936

[Close]
BLAST of Carg27592 vs. ExPASy Swiss-Prot
Match: Q9SHL7 (Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana OX=3702 GN=RRP44A PE=2 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 1.4e-47
Identity = 87/115 (75.65%), Postives = 104/115 (90.43%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVEL+ LIYF+ RPTD EAR+VKIRSNGFIVFVPK+GIEGP+YL+
Sbjct: 819 NLNYRHRNAQMAGRASVELYVLIYFRTRPTDEEARVVKIRSNGFIVFVPKYGIEGPVYLT 878

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLI 126
            +GEK  G+W VDE+ QKI ++DGS++Y+VLQ V+IHMEVVEPQPNRPKLQL L+
Sbjct: 879 GKGEKGAGDWYVDEEKQKIVKMDGSLSYSVLQTVKIHMEVVEPQPNRPKLQLTLL 933

[Close]
BLAST of Carg27592 vs. ExPASy Swiss-Prot
Match: Q17632 (Probable exosome complex exonuclease RRP44 OS=Caenorhabditis elegans OX=6239 GN=dis-3 PE=3 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-16
Identity = 43/121 (35.54%), Postives = 71/121 (58.68%), Query Frame = 0 

Query: 5   CCKLFPDLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIE 64
           C K+  ++NYRH+ AQ AGRASV+L+ + YFK +    E  ++ +R+NG  VFVPK+G+E
Sbjct: 824 CTKICTNINYRHKQAQYAGRASVQLNVVRYFKGKVETCEGFVMGVRNNGIQVFVPKYGLE 883

Query: 65  GPIYLSARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKL 124
             I L            +D ++  +K ++G +    L+ V + + V E    RP+++L+L
Sbjct: 884 SIIVLQTSAASGT---TIDVEEMSVK-VNGDVVIKELEPVTVRISVNEKNQQRPRVELQL 940

Query: 125 I 126
           I
Sbjct: 944 I 940

[Close]
BLAST of Carg27592 vs. ExPASy Swiss-Prot
Match: P37202 (Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dis3 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-12
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 0 

Query: 12  LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSA 71
           +NYRHR AQMAGRAS+E +     K    + +A ++K+  NGF+VF+ +FG+EG +Y  +
Sbjct: 849 INYRHRMAQMAGRASIEYYVGQALKGGVAEEDAYVIKVFKNGFVVFIARFGLEGIVYTKS 908

Query: 72  RGE--KQNGEWLVDEQDQKIKRLD----GSITYNVLQAVRIHMEVV-EPQPNRPKLQLKL 126
                + N E++ DE    I+  D     ++   + Q VR+ +  V +    + K+Q+ L
Sbjct: 909 LSSVLEPNVEYVEDEYKLNIEIRDQPKPQTVQIQMFQQVRVRVTTVRDEHSGKQKVQITL 968

[Close]
BLAST of Carg27592 vs. ExPASy Swiss-Prot
Match: Q9Y2L1 (Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-11
Identity = 36/116 (31.03%), Postives = 66/116 (56.90%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFK-KRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYL 70
           +LN+RH+ AQ A RASV  HT ++FK K     EA I+ +R N  +V +PK+G+EG ++ 
Sbjct: 816 NLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAYILFVRKNAIVVLIPKYGLEGTVFF 875

Query: 71  SARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLI 126
             + +K N + + D++   +K  D    ++V   V++ + +        K+++ L+
Sbjct: 876 EEK-DKPNPQLIYDDEIPSLKIED--TVFHVFDKVKVKIMLDSSNLQHQKIRMSLV 928

[Close]
BLAST of Carg27592 vs. ExPASy Swiss-Prot
Match: Q9CSH3 (Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 35/116 (30.17%), Postives = 67/116 (57.76%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFK-KRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYL 70
           +LN+RH+ AQ A RASV  HT ++FK K     EA I+ +R N  +V +PK+G+EG ++ 
Sbjct: 816 NLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAYILFVRKNAIVVLIPKYGLEGTVFF 875

Query: 71  SARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLI 126
             + +K       D++   + R++G++ ++V   V++ + +        K+++ L+
Sbjct: 876 EEK-DKPKPRLAYDDEIPSL-RIEGTV-FHVFDKVKVKITLDSSNLQHQKIRMALV 928

[Close]
BLAST of Carg27592 vs. ExPASy TrEMBL
Match: A0A6J1EJB8 (exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita moschata OX=3662 GN=LOC111434671 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.1e-58
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPI+LS
Sbjct: 821 NLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIHLS 880

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 127
           ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT
Sbjct: 881 ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 936

[Close]
BLAST of Carg27592 vs. ExPASy TrEMBL
Match: A0A6J1JDQ5 (exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita maxima OX=3661 GN=LOC111485938 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.3e-57
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS
Sbjct: 821 NLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 880

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT 127
           ARGEKQNGEWLVDEQDQK+K+LDGSITYNVLQAVRIHMEVVEPQPNRPKLQL LIT
Sbjct: 881 ARGEKQNGEWLVDEQDQKMKKLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLTLIT 936

[Close]
BLAST of Carg27592 vs. ExPASy TrEMBL
Match: A0A5A7SKL0 (Exosome complex exonuclease RRP44-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00330 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 103/115 (89.57%), Postives = 111/115 (96.52%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGP+YLS
Sbjct: 821 NLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLS 880

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLI 126
            + EKQ+GEW VDEQ+QKIK+LDGSITYN+LQAVRIHMEVVEPQPNRPKLQL L+
Sbjct: 881 GKSEKQSGEWFVDEQEQKIKKLDGSITYNILQAVRIHMEVVEPQPNRPKLQLTLL 935

[Close]
BLAST of Carg27592 vs. ExPASy TrEMBL
Match: A0A6J1GLL6 (exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita moschata OX=3662 GN=LOC111455103 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 102/115 (88.70%), Postives = 111/115 (96.52%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGP+YLS
Sbjct: 820 NLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLS 879

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLI 126
            +GEKQ+GEW VDEQ+QKIK+LDGS+ YN+LQAVRIHMEVVEPQPNRPKLQL L+
Sbjct: 880 GKGEKQSGEWFVDEQEQKIKKLDGSVAYNILQAVRIHMEVVEPQPNRPKLQLTLL 934

[Close]
BLAST of Carg27592 vs. ExPASy TrEMBL
Match: A0A1S3BZS3 (exosome complex exonuclease RRP44 homolog A OS=Cucumis melo OX=3656 GN=LOC103495216 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 103/115 (89.57%), Postives = 111/115 (96.52%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGP+YLS
Sbjct: 821 NLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLS 880

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLI 126
            + EKQ+GEW VDEQ+QKIK+LDGSITYN+LQAVRIHMEVVEPQPNRPKLQL L+
Sbjct: 881 GKSEKQSGEWFVDEQEQKIKKLDGSITYNILQAVRIHMEVVEPQPNRPKLQLTLL 935

[Close]
BLAST of Carg27592 vs. TAIR 10
Match: AT2G17510.1 (ribonuclease II family protein )

HSP 1 Score: 190.3 bits (482), Expect = 9.6e-49
Identity = 87/115 (75.65%), Postives = 104/115 (90.43%), Query Frame = 0 

Query: 11  DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
           +LNYRHRNAQMAGRASVEL+ LIYF+ RPTD EAR+VKIRSNGFIVFVPK+GIEGP+YL+
Sbjct: 819 NLNYRHRNAQMAGRASVELYVLIYFRTRPTDEEARVVKIRSNGFIVFVPKYGIEGPVYLT 878

Query: 71  ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLI 126
            +GEK  G+W VDE+ QKI ++DGS++Y+VLQ V+IHMEVVEPQPNRPKLQL L+
Sbjct: 879 GKGEKGAGDWYVDEEKQKIVKMDGSLSYSVLQTVKIHMEVVEPQPNRPKLQLTLL 933

[Close]
BLAST of Carg27592 vs. TAIR 10
Match: AT2G17510.2 (ribonuclease II family protein )

HSP 1 Score: 190.3 bits (482), Expect = 9.6e-49
Identity = 87/115 (75.65%), Postives = 104/115 (90.43%), Query Frame = 0 

Query: 11   DLNYRHRNAQMAGRASVELHTLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLS 70
            +LNYRHRNAQMAGRASVEL+ LIYF+ RPTD EAR+VKIRSNGFIVFVPK+GIEGP+YL+
Sbjct: 898  NLNYRHRNAQMAGRASVELYVLIYFRTRPTDEEARVVKIRSNGFIVFVPKYGIEGPVYLT 957

Query: 71   ARGEKQNGEWLVDEQDQKIKRLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLI 126
             +GEK  G+W VDE+ QKI ++DGS++Y+VLQ V+IHMEVVEPQPNRPKLQL L+
Sbjct: 958  GKGEKGAGDWYVDEEKQKIVKMDGSLSYSVLQTVKIHMEVVEPQPNRPKLQLTLL 1012

The following BLAST results are available for this feature:
BLAST of Carg27592 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022442.12.1e-66100.00Exosome complex exonuclease RRP44-like A, partial [Cucurbita argyrosperma subsp.... [more]
XP_023530073.16.2e-5898.28exosome complex exonuclease RRP44 homolog A-like [Cucurbita pepo subsp. pepo][more]
XP_022927909.11.1e-5798.28exosome complex exonuclease RRP44 homolog A-like [Cucurbita moschata][more]
KAG6588646.13.1e-5797.41Exosome complex exonuclease RRP44-like A, partial [Cucurbita argyrosperma subsp.... [more]
XP_022988682.16.9e-5796.55exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima][more]
BLAST of Carg27592 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SHL71.4e-4775.65Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q176322.1e-1635.54Probable exosome complex exonuclease RRP44 OS=Caenorhabditis elegans OX=6239 GN=... [more]
P372023.1e-1233.06Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
Q9Y2L14.5e-1131.03Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2[more]
Q9CSH32.3e-1030.17Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4[more]
BLAST of Carg27592 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EJB85.1e-5898.28exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1JDQ53.3e-5796.55exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A5A7SKL01.7e-5389.57Exosome complex exonuclease RRP44-like protein A OS=Cucumis melo var. makuwa OX=... [more]
A0A6J1GLL61.7e-5388.70exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita moschata OX=3662 G... [more]
A0A1S3BZS31.7e-5389.57exosome complex exonuclease RRP44 homolog A OS=Cucumis melo OX=3656 GN=LOC103495... [more]
BLAST of Carg27592 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G17510.19.6e-4975.65ribonuclease II family protein [more]
AT2G17510.29.6e-4975.65ribonuclease II family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033770Exosome complex exonuclease RRP44, S1 domainPFAMPF17215Rrp44_S1coord: 42..112
e-value: 2.8E-10
score: 40.0
NoneNo IPR availableGENE3D2.40.50.140coord: 40..125
e-value: 9.8E-20
score: 72.2
NoneNo IPR availablePANTHERPTHR23355:SF35EXOSOME COMPLEX EXONUCLEASE RRP44coord: 6..125
NoneNo IPR availablePANTHERPTHR23355RIBONUCLEASEcoord: 6..125
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 41..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27592-RACarg27592-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0016075 rRNA catabolic process
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)
molecular_function GO:0000175 3'-5'-exoribonuclease activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding