Carg27575 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27575
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L39
Location	Carg_Chr11: 8005089 .. 8006259 (-)
RNA-Seq Expression	Carg27575
Synteny	Carg27575

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAGGTAATTAGTTGTAGGGGTGCAGTCGTTGGCTGATTCTTGAATATCCAAGATGGTAAGTGTTTCTTACTTGGGAAGTGATTTTTTATTTTTAATTTCTTCTGGTAATTTGTTTAGTTACCCAGATTGATTTCGATTTGGGAGGTTGTGTTTTGTGATGCGAGTTTCCTTTAATGTGCACAGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGGTCTTAATCTCTTCTATTTTAGTTTTCATTCGTAATTTCATCATTTCTATTCTTATCAGTTTTAAATGTAACACCGCATTTTGATGTGTTCTTCAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGGTGTTCCTCTTGTGATTTGCTCTTCATCCTGTTTTGAACCTATTTAAGTGTTATGATGTTAGTTGTGGAGAAGACGAAGGATAGATGTTTGAATCTTTTTGCGTCTCAATTTAAGAACTTATGGAATAGAAAATCATGTAGTCTTTAGGCTGGCATCTATCTATGTTCAATCTATATCTGGAGTAATTTCAATTCTTAAGATAAATCTCGTGTTCATTTTGTTTAATTTCTATCACAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATATTCATGTGGATGAGCTGAGCTGAGCTGAGATGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCCGATTCATGTATTTTTCTTAGTAAAGCTATTTGTAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGTAAATTTTGTTTTAAATAGGGTTTTGTTAAAACTATTTGTAATTTGTATGGTGAAAATTAATATATAAATTCCTACAAAATGGGTACACTTAACTAAATCTACCCTTCTTTTTTACACTCTCACAACCATAAATATCAACACATAATTTCTACAATAACCACAATCAATTCTCTAAATAACCTGTAAACTTTTCAGAAATTTAAAATATCTAATAAACTTTAAATTTATTTTCTTGTCTCATAAATTCATAATTTTTAAAATCATCTGATTAGTTAGAAATAAG

mRNA sequence

ATGGGTCAGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGGTGTTCCTCTTGTGATTTGCTCTTCATCCTGTTTTGAACCTATTTAAGTGTTATGATGTTAGTTGTGGAGAAGACGAAGGATAGATGTTTGAATCTTTTTGCGTCTCAATTTAAGAACTTATGGAATAGAAAATCATGTAGTCTTTAGGCTGGCATCTATCTATGTTCAATCTATATCTGGAGTAATTTCAATTCTTAAGATAAATCTCGTGTTCATTTTGTTTAATTTCTATCACAGTTCATTTCTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATATTCATGTGGATGAGCTGAGCTGAGCTGAGATGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCCGATTCATGTATTTTTCTTAGTAAAGCTATTTGTAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGTAAATTTTGTTTTAAATAGGGTTTTGTTAAAACTATTTGTAATTTGTATGGTGAAAATTAATATATAAATTCCTACAAAATGGGTACACTTAACTAAATCTACCCTTCTTTTTTACACTCTCACAACCATAAATATCAACACATAATTTCTACAATAACCACAATCAATTCTCTAAATAACCTGTAAACTTTTCAGAAATTTAAAATATCTAATAAACTTTAAATTTATTTTCTTGTCTCATAAATTCATAATTTTTAAAATCATCTGATTAGTTAGAAATAAG

Coding sequence (CDS)

ATGGGTCAGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGA

Protein sequence

MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Homology

[Close]

BLAST of Carg27575 vs. NCBI nr
Match: KAA0050937.1 (60S ribosomal protein L39 [Cucumis melo var. makuwa] >KAG7022407.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma] >TYK10284.1 60S ribosomal protein L39 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 6.7e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 53

[Close]

BLAST of Carg27575 vs. NCBI nr
Match: OWM65802.1 (hypothetical protein CDL15_Pgr015227 [Punica granatum])

HSP 1 Score: 110.9 bits (276), Expect = 3.3e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          +GQPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 33 IGQPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 85

[Close]

BLAST of Carg27575 vs. NCBI nr
Match: THU60008.1 (hypothetical protein C4D60_Mb07t08090 [Musa balbisiana])

HSP 1 Score: 109.4 bits (272), Expect = 9.7e-21
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 2   GQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
           G+PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 66  GEPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 117

[Close]

BLAST of Carg27575 vs. NCBI nr
Match: EXB38641.1 (60S ribosomal protein L39 [Morus notabilis])

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 3  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 4  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54

[Close]

BLAST of Carg27575 vs. NCBI nr
Match: PKI64675.1 (hypothetical protein CRG98_014891 [Punica granatum])

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 3  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 37 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87

[Close]

BLAST of Carg27575 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 4  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27575 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 4  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27575 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.4e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 4  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27575 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 4  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27575 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-21
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 4  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27575 vs. ExPASy TrEMBL
Match: A0A5A7U961 (60S ribosomal protein L39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004350 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.3e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 53

[Close]

BLAST of Carg27575 vs. ExPASy TrEMBL
Match: A0A218W104 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015227 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          +GQPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 33 IGQPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 85

[Close]

BLAST of Carg27575 vs. ExPASy TrEMBL
Match: A0A4S8JDT2 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb07t08090 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.7e-21
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 2   GQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
           G+PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 66  GEPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 117

[Close]

BLAST of Carg27575 vs. ExPASy TrEMBL
Match: W9R5P2 (60S ribosomal protein L39 OS=Morus notabilis OX=981085 GN=L484_014456 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.0e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 3  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 4  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54

[Close]

BLAST of Carg27575 vs. ExPASy TrEMBL
Match: A0A2I0K803 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014891 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 3  QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 37 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87

[Close]

BLAST of Carg27575 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 4  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27575 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 96.7 bits (239), Expect = 6.1e-21
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 4  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Carg27575 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-19
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 11 IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54
          IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:

BLAST of Carg27575 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050937.1	6.7e-22	100.00	60S ribosomal protein L39 [Cucumis melo var. makuwa] >KAG7022407.1 60S ribosomal...	[more]
OWM65802.1	3.3e-21	96.23	hypothetical protein CDL15_Pgr015227 [Punica granatum]	[more]
THU60008.1	9.7e-21	96.15	hypothetical protein C4D60_Mb07t08090 [Musa balbisiana]	[more]
EXB38641.1	1.7e-20	100.00	60S ribosomal protein L39 [Morus notabilis]	[more]
PKI64675.1	2.8e-20	98.04	hypothetical protein CRG98_014891 [Punica granatum]	[more]

BLAST of Carg27575 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6KAJ8	5.4e-22	96.00	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
P51426	5.4e-22	96.00	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
P51425	5.4e-22	96.00	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]
Q5SMI4	1.6e-21	94.00	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
P51424	2.7e-21	94.00	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]

BLAST of Carg27575 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U961	3.3e-22	100.00	60S ribosomal protein L39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A218W104	1.6e-21	96.23	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015227 PE=3 SV=1	[more]
A0A4S8JDT2	4.7e-21	96.15	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb07t08090 PE=3 SV=...	[more]
W9R5P2	8.0e-21	100.00	60S ribosomal protein L39 OS=Morus notabilis OX=981085 GN=L484_014456 PE=3 SV=1	[more]
A0A2I0K803	1.4e-20	98.04	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014891 PE=3 SV=1	[more]

BLAST of Carg27575 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31985.1	1.9e-22	94.00	Ribosomal protein L39 family protein	[more]
AT3G02190.1	6.1e-21	90.00	Ribosomal protein L39 family protein	[more]
AT2G25210.1	4.4e-19	97.67	Ribosomal protein L39 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 11..51 e-value: 2.1E-22 score: 78.5
IPR000077	Ribosomal protein L39e	HAMAP	MF_00629	Ribosomal_L39e	coord: 1..53 score: 12.551048
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	1.10.1620.10	Ribosomal protein L39e	coord: 3..53 e-value: 1.0E-28 score: 101.0
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	48662	Ribosomal protein L39e	coord: 5..52
None	No IPR available	PANTHER	PTHR19970:SF29	SUBFAMILY NOT NAMED	coord: 2..53
None	No IPR available	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 2..53
IPR020083	Ribosomal protein L39e, conserved site	PROSITE	PS00051	RIBOSOMAL_L39E	coord: 32..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27575-RA	Carg27575-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome