Carg27355 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27355
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Small nuclear ribonucleoprotein Sm D1
Location	Carg_Chr02: 9981167 .. 9984347 (-)
RNA-Seq Expression	Carg27355
Synteny	Carg27355

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACTTGGTTTGATGAATTCACTAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGCACCATCACAGGTTTCCATCTCTCTTTCACTCACTAACTCGCACTGCATAAAAAACTTCATTAATCTTGTTAAAACCCTTAAACCCTAGATTTACGAACTTACGGGCAGAGGTTTTTTAAACTTTAACTTCCATTCTGTTTTCATCTTTGTTACGCCACTATATTGGAAGTTGCAGAATATCTCAGTGCAAAGTGATAATTGGAATTTGGATTCTTTTGTCAATTTAGAGTGGTTTATGATATACCACAAGCCTTCTGGCTCTTGATAACCTTGGAATACGTAGGTGTTTCTCGGCGACATTGCTACAAACTGGGGGTGACAACCAACTTGGGAACTTTATTTTAGCTGCTCTTGGGGTGTTGAGGCTCTGTAAGTAAGAGACTGCACAAACATCCTGTCTATCCTGGGGAGATTCATAATTATTTAACCAAAGACTTTTCAGCTTTAGCAGGTTTTGGATTAGTTCAATGAAAGTGGTTTAGTGGAGATACAAACAATTGGATGAATCAATGGATACTACTACTTTGTCTTGGCCAGCTTCTAATTGAACCCCATTGATCTTTTCTGCAAAGGCAATCCAACTACCAAATTTCTCTATTTAAAAGAGCCAAACAAGCACTCCACAATTATCCTCCAATGTAACCTTGGTTTAGGTTTCATAGCAAATTCTTGTGGTTCCACCCCCATATGCCGACCATCACCTCTCACCGTGTGACCATTTAAGGAGGCACTATTTCCTCTACTTATAGAAGAGCCAAACCCCAAGACCCAATGGAAGGGGAAGTCGAACTCCATTTCGATCAAGTATCTTATATCCCCCATCCCCACACCCCCCCCCAAAAAAAAAAAAAAAAAATGTTGGTGATTATGATGAGATTGCATTTTGTTGTGCACACCTCCTATCAGCTTCCACTTGATGTATTTTTCTATGTGCTGCTGGTTCCTGAAACTAAATTATTGTTGTCTTTGCTTACATACTGTTGTTATGGAAGAGTTCTACTCAATGTCATAGTTTTAGTTGGTCACACCTTCTGTTGTAGGATTTCACTTGAAACTATAAATAAGTGTCAATATATACAATATGCTTAATAACCTACCTTGCAGTGCACTATGACTTGGCCTAATTGAATAAGGTCATGTAATAACAAATGACTTGGGGAGAGAATGGATTCAAGCCATGTTGGTTACCTAAGGATTTATCATCCTATGACGTACCTTGGCAACAGAATATAGTAGGGTCAGTCAGTTGTCGCAAGTTGGATTTGAAATGAATGGATATGAAAAAAAATGAAAAATAAAAACCTATCTTGCACTTACAGCTTGTGAAATTTGTTTGGCCTAATACGTTGAAGCATCTAAATTACGCTCTACGTTCCTGTTTTCTATAATTTATTTCTAAAACATGCTCAGATGAGTATTATTATTATTTTTTTTAAAAAAAAAAGAACAATGACGGCATGAACTTGATGTAGAAGCTCTTACTCTTTTTACTTGAAACCAAGCATTGGTCAAGGTTAGAAGTCATTGACGGGCTGATTTTCTTGTATCACTTAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTAAAGCTTACTCTAAAGGGGAAAAATCCAGTTTACCATGGATCATTTAAGGTGTGAGGGGAAACAACATCAGATATTATATTCTACCTGACAGCTTGATCTTGAGACTTTACTTGTTGAAGAGACACCAGGGTCAAGCCCAAGAAACCTACTGCAGGTATGCGTCTTTGCATTTTGCCTGTACTTTATGGTGTTTTCTGAAAGTCAAATTGTTTTATACTGAATCGTATGCCACCCAGTGTCAAATATGTTTGCTTATGTTATTTCCCCATTCTTTTGCAACTTATAGGGAAAGCCTTTGGGGCGTGGACGAGTGGACGAGGAGCCGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTTCAAATTTTGATCTCCGTAGTGTAAACACTTGTATCTTAGGGAAAGTTTGTGAATTTAGTGACGTGAAGATGTGGTATAGCAATTCACTGTCCGATCTCATATGTTTATTACAATGCTATTCAGTTGTTTTCTCTGTGATCGATGTAGCTTTGCTATGTGGCTGGGATCTGCCCCTGTTAATGATTTACTCTAATATCATCAACAATGATCAAACTCTTGTATGTCTTCAAATTAATATTTCGTTTTTTTACTCAACTCTGAAAGATGTAGTCATTAAGTAATTGAGTTGGTTAGGATGAATATGAACTTGTTTCGTAGGGTTGCTGAAGACACTATTTTGGCAAGTAATGATGGTAAGACTCTTGGTGGCGTTTTCTTCTACCTTGAAATAAAAGTCGAGAGTTCTCTAGAGTTTAGAGCTCTTTCTTCCTCCAACTGCGTTCTTTTCATTAACTCGGACAAGCAATTTACCGTGGGGTGGTAGAGGCTCTGTAGTCTGAAGCTTATCAGGTTCTTGAATTTGCCTTTTCAAGGGCGTGATGGAAATTATAAGGAAGTACGCAAACATCTGATCCAGATTCAATTGAAAGAGAACTCAGTTTATGGTTCTTGTGAAATGGATTTGCAAATGTTACGTTTATCCTTGTTTCATTACGGTTCTTAGTGTGATACAGGTTTGTTGCCCTAAGTTTTAAACCGACGCGGATAAAGTTCTAAAAGTAACGGTGTTTTTTTTTTTTGTTGGGGGGGGGGGGGGGGGGGTGGGGTGGTGCTTAAAGGAAGACCTTGGACTAATTGACCTTTGTTTAATGGTTTGCCATTTCTATCTAACAAATATTTTCTTCGTCACCAAGGTGAGGAGGAAGAGTAGGAGGGAACTCTGAAAGACCTAGCCGTAGCCGACACAGCAAGAAAAGATGGGAAAGAAACAGTCTGATACCAAGCAAGCAGCTATCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCATCCTCGATAGGGTCCGCTCCGCCATGGACAACGCTGATCCGGCTCGGGATACCGACGACCTTGCCGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAGTACCACCGTTTAA

mRNA sequence

AAAACTTGGTTTGATGAATTCACTAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGCACCATCACAGAAGCTCTTACTCTTTTTACTTGAAACCAAGCATTGGTCAAGGTTAGAAGTCATTGACGGGCTGATTTTCTTGTATCACTTAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTAAAGCTTACTCTAAAGGGGAAAAATCCAGTTTACCATGGATCATTTAAGCTTGATCTTGAGACTTTACTTGTTGAAGAGACACCAGGGTCAAGCCCAAGAAACCTACTGCAGGGAAAGCCTTTGGGGCGTGGACGAGTGGACGAGGAGCCGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTTCAAATTTTGATCTCCGTAGTGGTTGCTGAAGACACTATTTTGGCAAGTAATGATGGTAAGACTCTTGGTGGCGTTTTCTTCTACCTTGAAATAAAAGTCGAGAGTTCTCTAGAGTTTAGAGCTCTTTCTTCCTCCAACTGCGTTCTTTTCATTAACTCGGACAAGCAATTTACCCCGACACAGCAAGAAAAGATGGGAAAGAAACAGTCTGATACCAAGCAAGCAGCTATCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCATCCTCGATAGGGTCCGCTCCGCCATGGACAACGCTGATCCGGCTCGGGATACCGACGACCTTGCCGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAGTACCACCGTTTAA

Coding sequence (CDS)

AAAACTTGGTTTGATGAATTCACTAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGCACCATCACAGAAGCTCTTACTCTTTTTACTTGAAACCAAGCATTGGTCAAGGTTAGAAGTCATTGACGGGCTGATTTTCTTGTATCACTTAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTAAAGCTTACTCTAAAGGGGAAAAATCCAGTTTACCATGGATCATTTAAGCTTGATCTTGAGACTTTACTTGTTGAAGAGACACCAGGGTCAAGCCCAAGAAACCTACTGCAGGGAAAGCCTTTGGGGCGTGGACGAGTGGACGAGGAGCCGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTTCAAATTTTGATCTCCGTAGTGGTTGCTGAAGACACTATTTTGGCAAGTAATGATGGTAAGACTCTTGGTGGCGTTTTCTTCTACCTTGAAATAAAAGTCGAGAGTTCTCTAGAGTTTAGAGCTCTTTCTTCCTCCAACTGCGTTCTTTTCATTAACTCGGACAAGCAATTTACCCCGACACAGCAAGAAAAGATGGGAAAGAAACAGTCTGATACCAAGCAAGCAGCTATCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCATCCTCGATAGGGTCCGCTCCGCCATGGACAACGCTGATCCGGCTCGGGATACCGACGACCTTGCCGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAGTACCACCGTTTAA

Protein sequence

KTWFDEFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV

Homology

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BLAST of Carg27355 vs. NCBI nr
Match: KAG7036368.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 538.1 bits (1385), Expect = 4.4e-149
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   KTWFDEFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYH 60
           KTWFDEFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYH
Sbjct: 1   KTWFDEFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYH 60

Query: 61  LGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSSPRNLLQGKPLGRGRV 120
           LGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSSPRNLLQGKPLGRGRV
Sbjct: 61  LGVDISMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSSPRNLLQGKPLGRGRV 120

Query: 121 DEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRAL 180
           DEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRAL
Sbjct: 121 DEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRAL 180

Query: 181 SSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRS 240
           SSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRS
Sbjct: 181 SSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRS 240

Query: 241 AMDNADPARDTDDLADNQSDQRPSDDDQSTTV 273
           AMDNADPARDTDDLADNQSDQRPSDDDQSTTV
Sbjct: 241 AMDNADPARDTDDLADNQSDQRPSDDDQSTTV 272

[Close]

BLAST of Carg27355 vs. NCBI nr
Match: KAG6606428.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.3 bits (534), Expect = 2.1e-50
Identity = 151/297 (50.84%), Postives = 169/297 (56.90%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDI
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVVH-----------------------GTI----TGVDI 61

Query: 66  SMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPW 125
           SMNTHLKAVKLTLKGKNPV             +   PGSSPRNLLQG   G   VDE+  
Sbjct: 62  SMNTHLKAVKLTLKGKNPVTMDH---------LSRHPGSSPRNLLQGSLWG---VDED-- 121

Query: 126 AWSWSWTLDLLQFQILISV--VVAEDTILASNDGKTLGGVFFYLEIKVESSLEFRALSSS 185
                   + +   +++    V   +  L S +   LG V  + ++K+  S    +LS  
Sbjct: 122 --------EAVGVVVVVDARFVAVSNFDLRSVNTCILGKVCEFSDVKMWYS---NSLSDL 181

Query: 186 NCVL----------------------------FINSDKQFTPTQQEKMGKKQSDTKQAAI 245
            C+L                             IN+D+    T QEKMGKKQSDTKQAAI
Sbjct: 182 ICLLQCYSVVFSVIDVALLCGWDLPLLMIYSNIINNDQ----TLQEKMGKKQSDTKQAAI 241

Query: 246 VFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV 273
           VFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV
Sbjct: 242 VFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV 242

[Close]

BLAST of Carg27355 vs. NCBI nr
Match: KAG6571478.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 3.8e-28
Identity = 108/258 (41.86%), Postives = 130/258 (50.39%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDI
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVVH-----------------------GTI----TGVDI 61

Query: 66  SMNTHLKAVKLTLKGKNPVYHGSFKLDLETLLVEETPGSSPRNLLQGKPLGRGRVDEEPW 125
           SMNTHLKAVKLTLKGKNPV             +    GSS RN LQG       VDE+  
Sbjct: 62  SMNTHLKAVKLTLKGKNPVTMDH---------LSRHRGSSRRNQLQG---SLWDVDEDVD 121

Query: 126 AWS-------WSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVF---FYLEIKVESSL 185
             +       +   +   +   + + +VA+D+  + +  + L   F    +         
Sbjct: 122 VGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDFFRALPPPFALLVHFAGNARGPE 181

Query: 186 EFRALSSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAFKPIL 245
           E R  S S+ +L        T T    MGKK S +KQA  + GALALGWLAIEMAFKP L
Sbjct: 182 ENRKSSRSSLLLSHLVGAATTRT----MGKKPSGSKQAFFILGALALGWLAIEMAFKPFL 216

Query: 246 DRVRSAMDNADPARDTDD 254
           D+ RSAMDN+DP RD DD
Sbjct: 242 DKARSAMDNSDPTRDPDD 216

[Close]

BLAST of Carg27355 vs. NCBI nr
Match: VFR02113.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 132.1 bits (331), Expect = 7.2e-27
Identity = 104/281 (37.01%), Postives = 127/281 (45.20%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVV                       +G I     GVD+
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVV-----------------------NGTI----TGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 125
           SMNTHLK VKLT KGKNPV              Y     ++LETLLVE+TP   P+    
Sbjct: 62  SMNTHLKTVKLTPKGKNPVTMDHLSVRGNNIRYYILPDSINLETLLVEDTPKVKPKKPTA 121

Query: 126 GKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKV 185
           GK LGRGR                                     G+  G     +   +
Sbjct: 122 GKALGRGR---------------------------------GRGRGRGRGRGRNRVSKAI 181

Query: 186 ESSLEFRALSSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAF 245
             +  F  L                   +EKMG+K S  K AA+VFGALA GWLAIE+AF
Sbjct: 182 VQTTRFNTLE-----------------LREKMGEK-SSLKSAAVVFGALAAGWLAIELAF 204

Query: 246 KPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV 273
           KP LD+ R+A+  +DP  D DD  +N     PSD D  +++
Sbjct: 242 KPFLDKARAALKKSDPNYDPDDATENSPPPPPSDLDDDSSI 204

[Close]

BLAST of Carg27355 vs. NCBI nr
Match: KAD6120146.1 (hypothetical protein E3N88_11417 [Mikania micrantha])

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-23
Identity = 106/279 (37.99%), Postives = 127/279 (45.52%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDI
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVVH-----------------------GTI----TGVDI 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 125
           SMNTHLK VKLTLKGKNPV              Y     L+LETLLVEETP   P+    
Sbjct: 62  SMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 121

Query: 126 GKPLG-RGRVDE--EPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLE 185
           G+    +  V +  +P  WS       L  Q     V+ ED                   
Sbjct: 122 GQDEQLKNYVQKIVDPKLWSIEHGKGYLSKQATNGTVLVED------------------- 181

Query: 186 IKVESSLEFRALSSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIE 245
                        SSN   F+ +  + TP             K A +V GALA GW AIE
Sbjct: 182 -------------SSN--RFVMAKGESTP------------LKSAVVVIGALAFGWAAIE 206

Query: 246 MAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDD 268
           +AFKP LD+ R++M+ +DP RD DD AD  +D + S D+
Sbjct: 242 LAFKPWLDKARTSMNKSDPTRDPDD-ADIDADAKKSVDE 206

[Close]

BLAST of Carg27355 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.8e-19
Identity = 62/128 (48.44%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVVH                       G I     GVD+
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVVH-----------------------GTI----TGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPVY--HGSFK------------LDLETLLVEETPGSSPRNLLQ 120
           SMNTHLK VK++LKGKNPV   H S +            L+LETLLVE+TP   P+  + 
Sbjct: 62  SMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVA 102

[Close]

BLAST of Carg27355 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.8e-19
Identity = 64/129 (49.61%), Postives = 70/129 (54.26%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGT+VH                       G I     GVD+
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTIVH-----------------------GTI----TGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 120
           SMNTHLKAVKLTLKGKNPV              Y     L+LETLLVE+TP   P+    
Sbjct: 62  SMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTA 103

[Close]

BLAST of Carg27355 vs. ExPASy Swiss-Prot
Match: O42661 (Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=smd1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.0e-12
Identity = 50/130 (38.46%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKL NETVSIELKNGT+VH                       G I      VD+
Sbjct: 2   KLVRFLMKLTNETVSIELKNGTIVH-----------------------GTI----TSVDM 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEET--PGSSPRNL 120
            MNTHLKAVK+T+KG+ PV              Y     L L+TLL++++  P    + +
Sbjct: 62  QMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKKKEV 104

[Close]

BLAST of Carg27355 vs. ExPASy Swiss-Prot
Match: Q9VU02 (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster OX=7227 GN=SmD1 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-11
Identity = 46/128 (35.94%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKL++ETV+IELKNGT +H                       G I     GVD+
Sbjct: 2   KLVRFLMKLSHETVTIELKNGTQIH-----------------------GTI----TGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPVYHGSF--------------KLDLETLLVEETPGSSPRNLLQ 120
           +MNTHLK+V++T+K ++PV+  +                L LETLL+++TP S  +    
Sbjct: 62  AMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDS 102

[Close]

BLAST of Carg27355 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-11
Identity = 52/130 (40.00%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKL++ETV+IELKNGT VH                       G I     GVD+
Sbjct: 2   KLVRFLMKLSHETVTIELKNGTQVH-----------------------GTI----TGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPVYHGSF--------------KLDLETLLVEETP--GSSPRNL 120
           SMNTHLKAVK+TLK + PV   +                L L+TLLV+  P   S  R  
Sbjct: 62  SMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 104

[Close]

BLAST of Carg27355 vs. ExPASy TrEMBL
Match: A0A484NMA3 (Small nuclear ribonucleoprotein Sm D1 OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS43888 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-27
Identity = 104/281 (37.01%), Postives = 127/281 (45.20%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVV                       +G I     GVD+
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVV-----------------------NGTI----TGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 125
           SMNTHLK VKLT KGKNPV              Y     ++LETLLVE+TP   P+    
Sbjct: 62  SMNTHLKTVKLTPKGKNPVTMDHLSVRGNNIRYYILPDSINLETLLVEDTPKVKPKKPTA 121

Query: 126 GKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKV 185
           GK LGRGR                                     G+  G     +   +
Sbjct: 122 GKALGRGR---------------------------------GRGRGRGRGRGRNRVSKAI 181

Query: 186 ESSLEFRALSSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAF 245
             +  F  L                   +EKMG+K S  K AA+VFGALA GWLAIE+AF
Sbjct: 182 VQTTRFNTLE-----------------LREKMGEK-SSLKSAAVVFGALAAGWLAIELAF 204

Query: 246 KPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQSTTV 273
           KP LD+ R+A+  +DP  D DD  +N     PSD D  +++
Sbjct: 242 KPFLDKARAALKKSDPNYDPDDATENSPPPPPSDLDDDSSI 204

[Close]

BLAST of Carg27355 vs. ExPASy TrEMBL
Match: A0A5N6PG97 (Small nuclear ribonucleoprotein Sm D1 OS=Mikania micrantha OX=192012 GN=E3N88_11417 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.0e-24
Identity = 106/279 (37.99%), Postives = 127/279 (45.52%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDI
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVVH-----------------------GTI----TGVDI 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 125
           SMNTHLK VKLTLKGKNPV              Y     L+LETLLVEETP   P+    
Sbjct: 62  SMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 121

Query: 126 GKPLG-RGRVDE--EPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLE 185
           G+    +  V +  +P  WS       L  Q     V+ ED                   
Sbjct: 122 GQDEQLKNYVQKIVDPKLWSIEHGKGYLSKQATNGTVLVED------------------- 181

Query: 186 IKVESSLEFRALSSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIE 245
                        SSN   F+ +  + TP             K A +V GALA GW AIE
Sbjct: 182 -------------SSN--RFVMAKGESTP------------LKSAVVVIGALAFGWAAIE 206

Query: 246 MAFKPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDD 268
           +AFKP LD+ R++M+ +DP RD DD AD  +D + S D+
Sbjct: 242 LAFKPWLDKARTSMNKSDPTRDPDD-ADIDADAKKSVDE 206

[Close]

BLAST of Carg27355 vs. ExPASy TrEMBL
Match: A0A1R3KD71 (Small nuclear ribonucleoprotein Sm D1 OS=Corchorus olitorius OX=93759 GN=COLO4_09117 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23
Identity = 106/280 (37.86%), Postives = 123/280 (43.93%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVV                       +G I     GVDI
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVV-----------------------NGTI----TGVDI 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 125
           SMNTHLK VKLTLKGKNPV              Y     ++LETLLVEETP   P+    
Sbjct: 62  SMNTHLKTVKLTLKGKNPVSLDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPK---- 121

Query: 126 GKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKV 185
            KP                                AE+                      
Sbjct: 122 -KP------------------------------TAAEE---------------------- 173

Query: 186 ESSLEFRALSSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAF 245
               E RA                   ++ KMGK  +  KQAA+VFGALA GWLAIEMAF
Sbjct: 182 ----EKRA-------------------KKRKMGKSTA-MKQAAVVFGALAFGWLAIEMAF 173

Query: 246 KPILDRVRSAMDNADPARDTDDLADNQSDQ-RPSDDDQST 271
           KP LD+ R +MD +DP RD DD   ++ D  R +DDD S+
Sbjct: 242 KPFLDKARGSMDKSDPNRDPDDTDVHKDDSARETDDDSSS 173

[Close]

BLAST of Carg27355 vs. ExPASy TrEMBL
Match: A0A5C7I3G1 (Small nuclear ribonucleoprotein Sm D1 OS=Acer yangbiense OX=1000413 GN=EZV62_010618 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-22
Identity = 104/278 (37.41%), Postives = 122/278 (43.88%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGT+VH                       G I     GVDI
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTIVH-----------------------GTI----TGVDI 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 125
           SMNTHLKAVKLTLKGKNPV              Y     L+LETLLVEETP   P+    
Sbjct: 62  SMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPK---- 121

Query: 126 GKPLGRGRVDEEPWAWSWSWTLDLLQFQILISVVVAEDTILASNDGKTLGGVFFYLEIKV 185
            KP                       + + I VV           G+ +GG         
Sbjct: 122 -KPTAAP------------------GYVVNIYVV-----------GEYVGGDL------- 177

Query: 186 ESSLEFRALSSSNCVLFINSDKQFTPTQQEKMGKKQSDTKQAAIVFGALALGWLAIEMAF 245
                                            +     K+A  VFGALALGWLAIE+A 
Sbjct: 182 ---------------------------------RDVKGMKRAVTVFGALALGWLAIEIAL 177

Query: 246 KPILDRVRSAMDNADPARDTDDLADNQSDQRPSDDDQS 270
           KP LD+ R+AMD +DPARD DD+ D  +++ PSD D S
Sbjct: 242 KPFLDKARAAMDKSDPARDPDDV-DEDNNKLPSDADAS 177

[Close]

BLAST of Carg27355 vs. ExPASy TrEMBL
Match: A0A5J5A0A2 (Small nuclear ribonucleoprotein Sm D1 OS=Nyssa sinensis OX=561372 GN=F0562_009929 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 69/144 (47.92%), Postives = 77/144 (53.47%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVVH                       G I     GVDI
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVVH-----------------------GTI----TGVDI 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 125
           SMNTHLK VKLTLKGKNPV              Y     ++LETLLVEETP   P+    
Sbjct: 62  SMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKKPTA 117

Query: 126 GKPLGRGRVDEEPWAWSWSWTLDL 136
           G+PLG        WAW+W+W LD+
Sbjct: 122 GRPLGTWS-GPRTWAWTWTWPLDV 117

[Close]

BLAST of Carg27355 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 101.7 bits (252), Expect = 9.7e-22
Identity = 65/129 (50.39%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGT+VH            T  ++R        F  + GVD+
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTIVHGTI---------TDEYTR--------FYLNRGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 120
           SMNTHLKAVKLTLKGKNPV              Y     L+LETLLVE+TP   P+    
Sbjct: 62  SMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTA 113

[Close]

BLAST of Carg27355 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-20
Identity = 62/128 (48.44%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVVH                       G I     GVD+
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVVH-----------------------GTI----TGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPVY--HGSFK------------LDLETLLVEETPGSSPRNLLQ 120
           SMNTHLK VK++LKGKNPV   H S +            L+LETLLVE+TP   P+  + 
Sbjct: 62  SMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVA 102

[Close]

BLAST of Carg27355 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-20
Identity = 62/128 (48.44%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGTVVH                       G I     GVD+
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTVVH-----------------------GTI----TGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPVY--HGSFK------------LDLETLLVEETPGSSPRNLLQ 120
           SMNTHLK VK++LKGKNPV   H S +            L+LETLLVE+TP   P+  + 
Sbjct: 62  SMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVA 102

[Close]

BLAST of Carg27355 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-20
Identity = 64/129 (49.61%), Postives = 70/129 (54.26%), Query Frame = 0


Query: 6   EFTRFLMKLNNETVSIELKNGTVVHAPSQKLLLFLLETKHWSRLEVIDGLIFLYHLGVDI 65
           +  RFLMKLNNETVSIELKNGT+VH                       G I     GVD+
Sbjct: 2   KLVRFLMKLNNETVSIELKNGTIVH-----------------------GTI----TGVDV 61

Query: 66  SMNTHLKAVKLTLKGKNPV--------------YHGSFKLDLETLLVEETPGSSPRNLLQ 120
           SMNTHLKAVKLTLKGKNPV              Y     L+LETLLVE+TP   P+    
Sbjct: 62  SMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTA 103

[Close]

BLAST of Carg27355 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 206 KQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDD 254
           K S  KQA +V  A+ALGWLAIE+AFKP LD+ RS++D +DP +D DD
Sbjct: 3   KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

The following BLAST results are available for this feature:

BLAST of Carg27355 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036368.1	4.4e-149	100.00	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6606428.1	2.1e-50	50.84	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6571478.1	3.8e-28	41.86	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
VFR02113.1	7.2e-27	37.01	unnamed protein product [Cuscuta campestris]	[more]
KAD6120146.1	1.7e-23	37.99	hypothetical protein E3N88_11417 [Mikania micrantha]	[more]

BLAST of Carg27355 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSF1	9.8e-19	48.44	Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P...	[more]
Q9SY09	9.8e-19	49.61	Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P...	[more]
O42661	4.0e-12	38.46	Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 /...	[more]
Q9VU02	1.5e-11	35.94	Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster OX=722...	[more]
Q3ZC10	2.0e-11	40.00	Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1	[more]

BLAST of Carg27355 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A484NMA3	3.5e-27	37.01	Small nuclear ribonucleoprotein Sm D1 OS=Cuscuta campestris OX=132261 GN=CCAM_LO...	[more]
A0A5N6PG97	8.0e-24	37.99	Small nuclear ribonucleoprotein Sm D1 OS=Mikania micrantha OX=192012 GN=E3N88_11...	[more]
A0A1R3KD71	5.2e-23	37.86	Small nuclear ribonucleoprotein Sm D1 OS=Corchorus olitorius OX=93759 GN=COLO4_0...	[more]
A0A5C7I3G1	1.2e-22	37.41	Small nuclear ribonucleoprotein Sm D1 OS=Acer yangbiense OX=1000413 GN=EZV62_010...	[more]
A0A5J5A0A2	1.4e-20	47.92	Small nuclear ribonucleoprotein Sm D1 OS=Nyssa sinensis OX=561372 GN=F0562_00992...	[more]

BLAST of Carg27355 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02840.2	9.7e-22	50.39	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	7.0e-20	48.44	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	7.0e-20	48.44	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.1	7.0e-20	49.61	Small nuclear ribonucleoprotein family protein	[more]
AT3G52420.1	3.8e-10	60.42	outer envelope membrane protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.100		coord: 6..98 e-value: 5.4E-10 score: 40.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..272
None	No IPR available	PANTHER	PTHR23338:SF50	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1	coord: 52..121
None	No IPR available	PANTHER	PTHR23338:SF50	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1	coord: 8..31
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 8..31
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 52..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27355-RA	Carg27355-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0110165	cellular anatomical entity