Carg27317 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27317
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr12: 3447292 .. 3449196 (-)
RNA-Seq Expression	Carg27317
Synteny	Carg27317

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGTGGTCAAGTGGGTGTCTATGGCGGACATTGGGGCGCGAGTCTTTTATAAATATATACACAAAATTCTGTAATTTTGTTGCGTGTTTAGTCTTCCTCTTTTGAGGGTAAGAGAAAAAAAGATAACTTTTTTTTTTAATTTTGTTGTTGTTGTTCGTTGATAGAAGATGGAGACCTTGAACCTGAGCGGCGAGGCGCGCGCACCCCATTTGGTAGCGGCCCAACAGGACACAACTTTATTCTCTCTCTCTTCTCTCTGTTTTTGAATTTATAATTTAATTTTTTTTGTTGGGTTGGGTGTATGTGAATTGTGTCTTCTCTAATTTATTAAATTCTTTAAACGTCTGGAATGGGAACGGCCTGCCTTGTGTCTGGTGGATGTTACTTCCTTCTCCTTTCTGAGTTAATTCTTAATTAATTAAAGGGTTACTCTGCCTCTTTAATCTCTATTTGTCTTGAGACATGTCTTTTGTCTACTCATCCCCACCTTCTCACCCTTCTCGTGGGTTTTGTTAGCTCCACTTTCCTCCAAGGAGATCCCTCAAGCTTAAACTTCTTATCCTCGCTTCATTTCCGGCATGGCTTCTTGGGTTTTCGTCCAGATCACTTCTTCATAGATCGGACCCTTTTCTCCTCCTTTCTCCTTTTAATTCAAATTTCCATCTTGTTTGCGTAAGTTTTCTCTCCTCCTTTCCCTTTTTTTTCTCATCTTGGGTTTCTTCTGTTCTTCATGATGGATGATTCTGTAAATCGAATGTTTGATCTCCAGGTGGTTGTGTCTTCTTTTCTGGCGGAGGTTTTTAATGCGAGAGCTGAATTAGCGGATGAATATGAATACTGGTTTAAACCTCATATCTTCTTCTTCGTCCTTCTTCGTCTTCTTTCGCTGAAACAAATATATTTTCCTTTTCGTTTCGATTTTCTTAAAGGGTATATCGATAGGGAAAAGGGTTTGGTGTTATGATTCTTCCATATTGAATTCTGAACTCATCTTATCGCGATTCAGGATGATTGATTCTTCTAATGACGTCACAAATTTATGATATATAGTTTGAGCGCCTTGGATTTCTCGCGCCCCTCCGCCCTTACACCACTGCTACTTTTTCTAGGTTGTTTGAATTTGAAACTTCTCATTTCCACTTGTTTTGAATCATCAGTTGGGTTAGTTCTTTGCCTCAATTTGTGAGTCTGATTTATCGATTCTAGGGATTCATTTCTGTAGCTTCCATGTCCTTTATTGTTTCTCTTCTTGTGGTGCCTTCGCTGTTCTATAACCACAATCTTGTGCTATTCATGATATCAATGTGAAAATAGGATTAGGAACTGTATTTATGTTAGAAGAGTTCGGTCCAGTCATATTATCGACTATGATATTTCACCTCTGTTGTTGCTATTACGATCTCTTGTTCTGGACGCTTCACTTCTTATAATTTATATTCGATTTTCTAGGCATCGTAGGAGACTGCAATACTCACAGTTTATTGGATAAGATATCATTCAACATTTAGACAATATTGCAGGATTCCAGTTTTACATTGTTTTAAAGCGCGGTGAAATCGGTGTTTCTTCTGATGCTAACATTTGATGTTTCTAGTGTTCGATACTGTAATTTTCTTGTATATACTCATCATGTACATTGCTAACTGTTCGTAACGCGAAATAAATTTGAAGGTTGATTTGTGCTTATTATTAAGCTCTTGGCTTGTTGTTGCTATGGCTTAAAACATTGGAGAGAAGAGAATGAGTATTGCTTGGTTGTTTGCATGTGCTAGCTAAGGTCAATCTGGTTTGGGGAATGAATCCTGTAACTCATTTAAGAATGGTTATGAATTGCTGATGGCAAATGTTACTCGGTCTTTGG

mRNA sequence

ATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGTGGTCAACTCCACTTTCCTCCAAGGAGATCCCTCAAGCTTAAACTTCTTATCCTCGCTTCATTTCCGGCATGGCTTCTTGGGTTTTCGTCCAGATCACTTCTTCATAGATCGGACCCTTTTCTCCTCCTTTCTCCTTTTAATTCAAATTTCCATCTTGTTTGCGTGGTTGTGTCTTCTTTTCTGGCGGAGGTTTTTAATGCGAGAGCTGAATTAGCGGATGAATATGAATACTGGTTTAAACCTCATATCTTCTTCTTCGTCCTTCTTCGTCTTCTTTCGCTGAAACAAATATATTTTCCTTTTCGTTTCGATTTTCTTAAAGGGTATATCGATAGGGAAAAGGGTTTGGTGTTATGATTCTTCCATATTGAATTCTGAACTCATCTTATCGCGATTCAGGATGATTGATTCTTCTAATGACGTCACAAATTTATGATATATAGTTTGAGCGCCTTGGATTTCTCGCGCCCCTCCGCCCTTACACCACTGCTACTTTTTCTAGGTTGTTTGAATTTGAAACTTCTCATTTCCACTTGTTTTGAATCATCAGTTGGGTTAGTTCTTTGCCTCAATTTGTGAGTCTGATTTATCGATTCTAGGGATTCATTTCTGTAGCTTCCATGTCCTTTATTGTTTCTCTTCTTGTGGTGCCTTCGCTGTTCTATAACCACAATCTTGTGCTATTCATGATATCAATGTGAAAATAGGATTAGGAACTGTATTTATGTTAGAAGAGTTCGGTCCAGTCATATTATCGACTATGATATTTCACCTCTGTTGTTGCTATTACGATCTCTTGTTCTGGACGCTTCACTTCTTATAATTTATATTCGATTTTCTAGGCATCGTAGGAGACTGCAATACTCACAGTTTATTGGATAAGATATCATTCAACATTTAGACAATATTGCAGGATTCCAGTTTTACATTGTTTTAAAGCGCGGTGAAATCGGTGTTTCTTCTGATGCTAACATTTGATGTTTCTAGTGTTCGATACTGTAATTTTCTTGTATATACTCATCATGTACATTGCTAACTGTTCGTAACGCGAAATAAATTTGAAGGTTGATTTGTGCTTATTATTAAGCTCTTGGCTTGTTGTTGCTATGGCTTAAAACATTGGAGAGAAGAGAATGAGTATTGCTTGGTTGTTTGCATGTGCTAGCTAAGGTCAATCTGGTTTGGGGAATGAATCCTGTAACTCATTTAAGAATGGTTATGAATTGCTGATGGCAAATGTTACTCGGTCTTTGG

Coding sequence (CDS)

ATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGTGGTCAACTCCACTTTCCTCCAAGGAGATCCCTCAAGCTTAAACTTCTTATCCTCGCTTCATTTCCGGCATGGCTTCTTGGGTTTTCGTCCAGATCACTTCTTCATAGATCGGACCCTTTTCTCCTCCTTTCTCCTTTTAATTCAAATTTCCATCTTGTTTGCGTGGTTGTGTCTTCTTTTCTGGCGGAGGTTTTTAATGCGAGAGCTGAATTAGCGGATGAATATGAATACTGGTTTAAACCTCATATCTTCTTCTTCGTCCTTCTTCGTCTTCTTTCGCTGAAACAAATATATTTTCCTTTTCGTTTCGATTTTCTTAAAGGGTATATCGATAGGGAAAAGGGTTTGGTGTTATGA

Protein sequence

MKKKKKKKKKKKRKKSGQLHFPPRRSLKLKLLILASFPAWLLGFSSRSLLHRSDPFLLLSPFNSNFHLVCVVVSSFLAEVFNARAELADEYEYWFKPHIFFFVLLRLLSLKQIYFPFRFDFLKGYIDREKGLVL

Homology

[Close]

BLAST of Carg27317 vs. NCBI nr
Match: KAG7020588.1 (hypothetical protein SDJN02_17274, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MKKKKKKKKKKKRKKSGQLHFPPRRSLKLKLLILASFPAWLLGFSSRSLLHRSDPFLLLS 60
           MKKKKKKKKKKKRKKSGQLHFPPRRSLKLKLLILASFPAWLLGFSSRSLLHRSDPFLLLS
Sbjct: 1   MKKKKKKKKKKKRKKSGQLHFPPRRSLKLKLLILASFPAWLLGFSSRSLLHRSDPFLLLS 60

Query: 61  PFNSNFHLVCVVVSSFLAEVFNARAELADEYEYWFKPHIFFFVLLRLLSLKQIYFPFRFD 120
           PFNSNFHLVCVVVSSFLAEVFNARAELADEYEYWFKPHIFFFVLLRLLSLKQIYFPFRFD
Sbjct: 61  PFNSNFHLVCVVVSSFLAEVFNARAELADEYEYWFKPHIFFFVLLRLLSLKQIYFPFRFD 120

Query: 121 FLKGYIDREKGLVL 135
           FLKGYIDREKGLVL
Sbjct: 121 FLKGYIDREKGLVL 134

[Close]

BLAST of Carg27317 vs. NCBI nr
Match: KAG7020583.1 (hypothetical protein SDJN02_17269, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 61/103 (59.22%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 5   KKKKKKKKRKKSGQL-----------HFPPRRSLKLKLLILASFPA-----WLLGFSSRS 64
           KKKKKKKKRKKSGQ+            F  R  LKLK    AS+P+      LLGFSS+ 
Sbjct: 2   KKKKKKKKRKKSGQVGVYGGHWGATPTFIQREILKLK----ASYPSLPFHGLLLGFSSQI 61

Query: 65  LLHRSDPFLLLSPFN-SNFHL-VCVVVSSFLAEVFNARAELAD 90
           LLHRSDPF    PF  SNFHL V  ++SSFLAEVFNARAELAD
Sbjct: 62  LLHRSDPFPPPPPFQISNFHLFVWWLLSSFLAEVFNARAELAD 100

The following BLAST results are available for this feature:

BLAST of Carg27317 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020588.1	1.8e-63	100.00	hypothetical protein SDJN02_17274, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7020583.1	2.0e-09	59.22	hypothetical protein SDJN02_17269, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg27317 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27317 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27317 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27317-RA	Carg27317-RA	mRNA