Carg27187 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27187
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 2126456 .. 2127872 (-)
RNA-Seq Expression	Carg27187
Synteny	Carg27187

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTATATGCTTTAATGGAGCAAGTTTGTGTTTGTGAAGGTGTTCGCTTGGGGAATGGGCTGATGAAGCCACTGCTGCTAGGAACACCACTTGTGAGTTTTCCCTTTAAAGCTTTCTCTTCCAAAATCTCTTATCTTGATGGCTAATATATATTAACTATAGGAAGAGGAGGTTCCATTGGTGGAAGAAAATGGGCATTGGAATTCAGGTTGGGCTTAAGTTTTGTGCATTAAATTTTGCCCAAACGGGACATATTCCACTCTTTATTATGCATCACATCGCATATCTAAAGTGGGTTTGACATTTATGATGCAGGGAAAAGTAGAAAACTTCTGATGGAAACTTCACCATCATCTCCAACCCCTTCCACAACAAGGGTTAGTCTTAGTCTTAGTCATCTCGGATTTTAAAACCTAACAAATTTATGTAAAGTTCATACAAGAACAGCAATTGATTAAGTTGGAAATGACCCACGATCGAAATATGTCGAAACGAAGTAAAAGGAACAACTTGAGAGGAGAGAGCTTTTAAAACGAAGAAATCTTAAACACTTAGCTTTTCAATTCTTTTCATTATTTCGACATATTTCGATCGTGGGTCATTCCAACATTTGGTATCAGAGTCATGCCCGTAAATTAGCAATGTGAATAGAATTTTCAAGTGTCGAACAAAGGGTGAGGACTCCAGAAAAGGAGTCGAGCCTCGGGGAAGTTGTTCGAGGGCTCCATAGGCCTAAGAGGAAGCTCTATAGTATACTTTGTTCGATGGGGATTGTTGGGAGGGAGTCACACGTTGGTTAATAAGTAAAAAATACTTTTCAAGCAAAGTCACGAGAGCTCATACTCAAAGTGGACAATATCACTAACAGGGTTGTGTGTGGTTTGATGTTTAGAATAAAGAAGGAAACAAAAAGGGGAACCAGGGCATGAAAGAACAGGACATGAAGAGTTCAAAGGCAGTTTCTGAGAATCTTGAGGCAGGGCATGAACAACAACAACATTATCCAGACCTCATAGAGATAGCAGAAATGGACTATTCTCCAGCAACAAGAAAGCCTCCAATACATAACTGATCCCAAAAGAAACAGACAAACAACACAACCGAACAAGACAAAAAGGGTTGTAGGGTAAAAGAAATTCAACAAAAAAGAGAAGAGTATAAAAGACAGCGTTACAGAAATGCTGCAGCTTTTTTAGGGCTTAGGGAACTGTCCTTTGTACATACCATTACTAAAAGCCTATATGTTATCAACATTAATATTATTATTACTACTTGTACCCCTAATTAATTAATTCTTCATAATGTTTTGCATGGATAAAGGCAACGACCAGACATTATAATATATTAATCCCACCAACTTGGGTGTCTTTTGTTTTTTACTTTTACTTTGAGAAAAGGAACAGAAAGGAACTG

mRNA sequence

ATGCTCTTATATGCTTTAATGGAGCAAGTTTGTGTTTGTGAAGGTGTTCGCTTGGGGAATGGGCTGATGAAGCCACTGCTGCTAGGAACACCACTTGAAGAGGAGGTTCCATTGGTGGAAGAAAATGGGCATTGGAATTCAGGGAAAAGTAGAAAACTTCTGATGGAAACTTCACCATCATCTCCAACCCCTTCCACAACAAGGAATAAAGAAGGAAACAAAAAGGGGAACCAGGGCATGAAAGAACAGGACATGAAGAGTTCAAAGGCAGTTTCTGAGAATCTTGAGGCAGGGCATGAACAACAACAACATTATCCAGACCTCATAGAGATAGCAGAAATGGACTATTCTCCAGCAACAAGAAAGCCTCCAATACATAACTGATCCCAAAAGAAACAGACAAACAACACAACCGAACAAGACAAAAAGGGTTGTAGGGTAAAAGAAATTCAACAAAAAAGAGAAGAGTATAAAAGACAGCGTTACAGAAATGCTGCAGCTTTTTTAGGGCTTAGGGAACTGTCCTTTGTACATACCATTACTAAAAGCCTATATGTTATCAACATTAATATTATTATTACTACTTGTACCCCTAATTAATTAATTCTTCATAATGTTTTGCATGGATAAAGGCAACGACCAGACATTATAATATATTAATCCCACCAACTTGGGTGTCTTTTGTTTTTTACTTTTACTTTGAGAAAAGGAACAGAAAGGAACTG

Coding sequence (CDS)

ATGCTCTTATATGCTTTAATGGAGCAAGTTTGTGTTTGTGAAGGTGTTCGCTTGGGGAATGGGCTGATGAAGCCACTGCTGCTAGGAACACCACTTGAAGAGGAGGTTCCATTGGTGGAAGAAAATGGGCATTGGAATTCAGGGAAAAGTAGAAAACTTCTGATGGAAACTTCACCATCATCTCCAACCCCTTCCACAACAAGGAATAAAGAAGGAAACAAAAAGGGGAACCAGGGCATGAAAGAACAGGACATGAAGAGTTCAAAGGCAGTTTCTGAGAATCTTGAGGCAGGGCATGAACAACAACAACATTATCCAGACCTCATAGAGATAGCAGAAATGGACTATTCTCCAGCAACAAGAAAGCCTCCAATACATAACTGA

Protein sequence

MLLYALMEQVCVCEGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN

Homology

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: KAG7021747.1 (hypothetical protein SDJN02_15474, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.0 bits (650), Expect = 3.4e-64
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MLLYALMEQVCVCEGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPS 60
           MLLYALMEQVCVCEGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPS
Sbjct: 1   MLLYALMEQVCVCEGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPS 60

Query: 61  SPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPAT 120
           SPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPAT
Sbjct: 61  SPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPAT 120

Query: 121 RKPPIHN 128
           RKPPIHN
Sbjct: 121 RKPPIHN 127

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: KAG6587859.1 (hypothetical protein SDJN03_16424, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73
           +GVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN
Sbjct: 9   QGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 68

Query: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 69  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 122

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: XP_022933409.1 (uncharacterized protein LOC111440836 [Cucurbita moschata])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73
           +GVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN
Sbjct: 21  QGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 80

Query: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 81  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 134

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: XP_023001652.1 (uncharacterized protein LOC111495723 [Cucurbita maxima])

HSP 1 Score: 221.1 bits (562), Expect = 5.5e-54
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73
           +GVRLGNGLMKPLLLGTPLEEEVPLVEENGH NSGKSRKLLMETSPSSPTPSTTRNKEGN
Sbjct: 21  QGVRLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKLLMETSPSSPTPSTTRNKEGN 80

Query: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           KKGN GMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 81  KKGNPGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 134

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: XP_023531425.1 (uncharacterized protein LOC111793666 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 3.0e-52
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73
           +GV LGNGLMKPLLLGTPLEEEVPLVEENGH NSGKSRKLLMETSPSSPTPSTTRNKEGN
Sbjct: 21  QGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKLLMETSPSSPTPSTTRNKEGN 80

Query: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           KKGN GMKEQDMK SKAVSENLEAGHE+QQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 81  KKGNPGMKEQDMKRSKAVSENLEAGHEEQQHYPDLIEIAEMDYSPATRKPPIHN 134

[Close]

BLAST of Carg27187 vs. ExPASy TrEMBL
Match: A0A6J1EZP7 (uncharacterized protein LOC111440836 OS=Cucurbita moschata OX=3662 GN=LOC111440836 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.7e-56
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73
           +GVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN
Sbjct: 21  QGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 80

Query: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 81  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 134

[Close]

BLAST of Carg27187 vs. ExPASy TrEMBL
Match: A0A6J1KH80 (uncharacterized protein LOC111495723 OS=Cucurbita maxima OX=3661 GN=LOC111495723 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.7e-54
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73
           +GVRLGNGLMKPLLLGTPLEEEVPLVEENGH NSGKSRKLLMETSPSSPTPSTTRNKEGN
Sbjct: 21  QGVRLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKLLMETSPSSPTPSTTRNKEGN 80

Query: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           KKGN GMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 81  KKGNPGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 134

[Close]

BLAST of Carg27187 vs. ExPASy TrEMBL
Match: A0A6J1C2B2 (uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007293 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.0e-22
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 14  EGVRLGNGLMKPL-LLGTPLEEEVPLVEE----------NGHWNSGKSRKLLMETSPSSP 73
           +G+RLGNG++KP+  L   L EE PL+EE           G  NSG  RKLL  TSPSS 
Sbjct: 61  DGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSPSSS 120

Query: 74  TPSTTRNKEGN---KKGNQGMKEQDMK--------SSKAVSENLEAGHEQQQHYPDLIEI 128
           TPS TRN E     K+G+   K++++         +S+AVSENLEAG   Q+HYPDL++I
Sbjct: 121 TPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAG---QEHYPDLVDI 180

[Close]

BLAST of Carg27187 vs. ExPASy TrEMBL
Match: A0A6J1C2H1 (uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007333 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.0e-22
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 14  EGVRLGNGLMKPL-LLGTPLEEEVPLVEE----------NGHWNSGKSRKLLMETSPSSP 73
           +G+RLGNG++KP+  L   L EE PL+EE           G  NSG  RKLL  TSPSS 
Sbjct: 22  QGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSPSSS 81

Query: 74  TPSTTRNKEGN---KKGNQGMKEQDMK--------SSKAVSENLEAGHEQQQHYPDLIEI 128
           TPS TRN E     K+G+   K++++         +S+AVSENLEAG   Q+HYPDL++I
Sbjct: 82  TPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAG---QEHYPDLVDI 141

[Close]

BLAST of Carg27187 vs. ExPASy TrEMBL
Match: A0A5A7U792 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00250 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 73/150 (48.67%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 1   MLLYALMEQVCVCEGVRLGNGLMKPLLLGTP---LEEEV------PLVEENGHWNSGKSR 60
           +L + L  Q    +G+RLGNG+M   L+G P   LEEEV        + ENGH NSG +R
Sbjct: 15  LLFFFLSNQ---AQGIRLGNGIMIK-LVGQPAKTLEEEVVEGFRKTTICENGHCNSGNNR 74

Query: 61  KLLMETS---PSSPTPSTTRNKEGN-KKGN----------QGMKEQDMKSSKAVSENLEA 120
           KL+  T+   PSSPTPST  N+E N KKGN             K+ D+++S+AVS+NLEA
Sbjct: 75  KLMTVTTPPIPSSPTPSTRNNEEENYKKGNPKSSNKEESSSVKKKDDLENSEAVSKNLEA 134

Query: 121 GHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
                    DLI+IAEMDYSPA RKPPIHN
Sbjct: 135 A-------LDLIDIAEMDYSPAKRKPPIHN 153

The following BLAST results are available for this feature:

BLAST of Carg27187 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021747.1	3.4e-64	100.00	hypothetical protein SDJN02_15474, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587859.1	3.4e-56	99.12	hypothetical protein SDJN03_16424, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022933409.1	3.4e-56	99.12	uncharacterized protein LOC111440836 [Cucurbita moschata]	[more]
XP_023001652.1	5.5e-54	97.37	uncharacterized protein LOC111495723 [Cucurbita maxima]	[more]
XP_023531425.1	3.0e-52	94.74	uncharacterized protein LOC111793666 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27187 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27187 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZP7	1.7e-56	99.12	uncharacterized protein LOC111440836 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A6J1KH80	2.7e-54	97.37	uncharacterized protein LOC111495723 OS=Cucurbita maxima OX=3661 GN=LOC111495723...	[more]
A0A6J1C2B2	6.0e-22	52.21	uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1C2H1	6.0e-22	52.21	uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5A7U792	2.0e-17	48.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Carg27187 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	PANTHER	PTHR33743:SF19	SUBFAMILY NOT NAMED	coord: 34..127
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 34..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27187-RA	Carg27187-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity