Carg27183 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27183
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-type domain-containing protein
Location	Carg_Chr11: 2110557 .. 2111283 (+)
RNA-Seq Expression	Carg27183
Synteny	Carg27183

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCCAATCACTGAACTTAACTACCAATTCCATATCAAACCGATAAAGCCCTAGATCAGTGCAGGAACTTCAGCTTTCAAGGTTTCGCCAAGTTTCTCCCATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGGTTCGTAAATCGCATCTCGACCTGTCAATGAATTAACAAATTATTCATTCGATTGAGGATGATGAACAGAGCTGATTCGATTTATCGTGTTTTTTTTTTCTTTTGCAGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGGTACTGAAACAACGGCGTCCGGAACAGCCGCGATGAATTTACATTTCGTTAATTTATTAATCATAAAACCTAAACGAAACACATCCAAAATTACTCTTGTAATCTGCGATTGGATGCAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGATGAAGACAACTTCATTCCAGTGGCTCCTTCTTCTTCTTCTTCTT

mRNA sequence

TCTTTCCAATCACTGAACTTAACTACCAATTCCATATCAAACCGATAAAGCCCTAGATCAGTGCAGGAACTTCAGCTTTCAAGGTTTCGCCAAGTTTCTCCCATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGATGAAGACAACTTCATTCCAGTGGCTCCTTCTTCTTCTTCTTCTT

Coding sequence (CDS)

ATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTTACATCAAACCAAAGCATGCTCGGATTCACCGCCCATCGTCGCCACTCGGACCTTAACCAGGAAATCCGTTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAGGAAGCCTGCTAGTCGAGGCACAAGAAAACGATAATCTGGACGGAATCGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGGAAATCAGAGGATAAAAGAGGGATAGCGACGAGAAAGTTCAGTTGGACGAATTGGATCGCCGGCGAGCAAAACAATTGTGGTCAGTGCTGGTGA

Protein sequence

MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGSLLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW

Homology

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_022933256.1 (uncharacterized protein LOC111440241 [Cucurbita moschata] >KAG6587853.1 hypothetical protein SDJN03_16418, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021743.1 hypothetical protein SDJN02_15470 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.4 bits (607), Expect = 3.1e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 117

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_023531367.1 (uncharacterized protein LOC111793636 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATR+FSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRRFSWTNWIAGEQNNCGQCW 117

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_023005584.1 (uncharacterized protein LOC111498516 isoform X2 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 21  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 80

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 81  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 137

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_023005591.1 (uncharacterized protein LOC111498516 isoform X3 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 117

[Close]

BLAST of Carg27183 vs. NCBI nr
Match: XP_023005576.1 (uncharacterized protein LOC111498516 isoform X1 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 32  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 91

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 92  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 148

[Close]

BLAST of Carg27183 vs. ExPASy TrEMBL
Match: A0A6J1EYJ8 (uncharacterized protein LOC111440241 OS=Cucurbita moschata OX=3662 GN=LOC111440241 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 117

[Close]

BLAST of Carg27183 vs. ExPASy TrEMBL
Match: A0A6J1KVE5 (uncharacterized protein LOC111498516 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111498516 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 1   MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 117

[Close]

BLAST of Carg27183 vs. ExPASy TrEMBL
Match: A0A6J1KVD0 (uncharacterized protein LOC111498516 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498516 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 32  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 91

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 92  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 148

[Close]

BLAST of Carg27183 vs. ExPASy TrEMBL
Match: A0A6J1KZN5 (uncharacterized protein LOC111498516 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498516 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.7e-58
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRRLHQTKACSDSPPI ATRTLTRKS+LCLYTSNHETLLASNPSLQGS
Sbjct: 21  MAGMLPGVECARRRRLHQTKACSDSPPIAATRTLTRKSILCLYTSNHETLLASNPSLQGS 80

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWTNWIAGEQNNCGQCW 118
           LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRG+ATRKFSWTNWIAGE+NNCGQCW
Sbjct: 81  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGMATRKFSWTNWIAGEKNNCGQCW 137

[Close]

BLAST of Carg27183 vs. ExPASy TrEMBL
Match: A0A6J1E1Y4 (uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430042 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.3e-35
Identity = 83/119 (69.75%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTLTRKSVLCLYTSNHETLLASNPSLQGS 60
           MAGMLPGVECARRRR HQ K  SDSP I A + LTR+SVLCLYTSNHETLLASNPSL+ S
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHI-AAQALTRRSVLCLYTSNHETLLASNPSLERS 60

Query: 61  LLVEAQENDNLDGIAREAKRRLDERLRKSEDKRGIATRKFSWT--NWIAGEQNNCGQCW 118
           LL+EA E+D LDG AREAKRRLDERLR     R     K +WT  NW   EQ+ CGQCW
Sbjct: 61  LLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLNWTKLNWTGVEQDKCGQCW 118

[Close]

BLAST of Carg27183 vs. TAIR 10
Match: AT2G15580.2 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRLHQTKACSDSPPIVATRTL----------TRKSVLCLYTSNHETL 60
           MAGMLPGVECARRRR H       +PPI ++ T           TR+    LYT+NHE+ 
Sbjct: 1   MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61  LASNPSLQGSLLVEAQENDN---LDGIAREAKRRLDERLR---KSEDKRGIATRKFSWT 104
            A     + S+  ++   DN   LDG A+EAK+RL++RLR   ++   + + T+  +W+
Sbjct: 61  QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTSSGKMVKTKGINWS 114

[Close]

BLAST of Carg27183 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-11
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRLHQTKACSDSPPIVATRTL----------TRKSVLCLYTSNHETL 60
          MAGMLPGVECARRRR H       +PPI ++ T           TR+    LYT+NHE+ 
Sbjct: 1  MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61 LASNPSLQGSLLVEAQENDN---LDGIAREAKRRLDERLR 88
           A     + S+  ++   DN   LDG A+EAK+RL++RLR
Sbjct: 61 QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

The following BLAST results are available for this feature:

BLAST of Carg27183 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933256.1	3.1e-59	100.00	uncharacterized protein LOC111440241 [Cucurbita moschata] >KAG6587853.1 hypothet...	[more]
XP_023531367.1	2.0e-58	98.29	uncharacterized protein LOC111793636 [Cucurbita pepo subsp. pepo]	[more]
XP_023005584.1	7.6e-58	96.58	uncharacterized protein LOC111498516 isoform X2 [Cucurbita maxima]	[more]
XP_023005591.1	7.6e-58	96.58	uncharacterized protein LOC111498516 isoform X3 [Cucurbita maxima]	[more]
XP_023005576.1	7.6e-58	96.58	uncharacterized protein LOC111498516 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg27183 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27183 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EYJ8	1.5e-59	100.00	uncharacterized protein LOC111440241 OS=Cucurbita moschata OX=3662 GN=LOC1114402...	[more]
A0A6J1KVE5	3.7e-58	96.58	uncharacterized protein LOC111498516 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KVD0	3.7e-58	96.58	uncharacterized protein LOC111498516 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KZN5	3.7e-58	96.58	uncharacterized protein LOC111498516 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E1Y4	3.3e-35	69.75	uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Carg27183 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15580.2	1.5e-11	38.66	RING/U-box superfamily protein	[more]
AT2G15580.1	4.3e-11	44.00	RING/U-box superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27183-RA	Carg27183-RA	mRNA