Carg27171 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27171
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphotosystem I reaction center subunit IV, chloroplastic-like
LocationCarg_Chr05: 5152074 .. 5152654 (-)
RNA-Seq ExpressionCarg27171
SyntenyCarg27171
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCTGTGATGTTATCATTATTCAAAGCATTGATACTCAAACCCCAAAGCTGCTTTGAGCCAGACAAAGGCCATGGCTGCCTCTAACCTTTCATGCATAGCTTCTGGAGTGCTCATTCCATCTCCACCCACCATATCATCATCCTCCTCTTTTAGGTCATCTTCTTTCGCCATCTTCCCCAACAATTCTAGATCATCTAGATTCGTTATCCGTGCCACTGCGGACGAAGCTGCTCCTGCCACCGCCGCGGCTACCGAAGAGCCCAAGCCTAAACCTCCCCCTATTGGTCCCAAAAGAGGTGCCAAGGTGTGTAAGAACTTTTTGTTCCAAACTTTGAAAGATTCGAACTTCTAGTCTATAATAATTTGACTAAAAAATATTATCATGTATTTGAACAGGTAAAGATTCTAAGGAAAGAATCCTACTGGTACAAAGATATTGGATCGGTTGTAACAGTTGACCAGGTTTGACCCTTGAACTTTTGTTCATTTATGATTTTTCTTTCTCGTGCGTGCAAATAGAAACTTTTTGGTTATATTAATTATGAGAATCATCGTCTGAAAGATGATTTCTCTGGAAAA

mRNA sequence

AATCTGTGATGTTATCATTATTCAAAGCATTGATACTCAAACCCCAAAGCTGCTTTGAGCCAGACAAAGGCCATGGCTGCCTCTAACCTTTCATGCATAGCTTCTGGAGTGCTCATTCCATCTCCACCCACCATATCATCATCCTCCTCTTTTAGGTCATCTTCTTTCGCCATCTTCCCCAACAATTCTAGATCATCTAGATTCGTTATCCGTGCCACTGCGGACGAAGCTGCTCCTGCCACCGCCGCGGCTACCGAAGAGCCCAAGCCTAAACCTCCCCCTATTGGTCCCAAAAGAGGTGCCAAGGTAAAGATTCTAAGGAAAGAATCCTACTGGTACAAAGATATTGGATCGGTTGTAACAGTTGACCAGGTTTGACCCTTGAACTTTTGTTCATTTATGATTTTTCTTTCTCGTGCGTGCAAATAGAAACTTTTTGGTTATATTAATTATGAGAATCATCGTCTGAAAGATGATTTCTCTGGAAAA

Coding sequence (CDS)

ATGGCTGCCTCTAACCTTTCATGCATAGCTTCTGGAGTGCTCATTCCATCTCCACCCACCATATCATCATCCTCCTCTTTTAGGTCATCTTCTTTCGCCATCTTCCCCAACAATTCTAGATCATCTAGATTCGTTATCCGTGCCACTGCGGACGAAGCTGCTCCTGCCACCGCCGCGGCTACCGAAGAGCCCAAGCCTAAACCTCCCCCTATTGGTCCCAAAAGAGGTGCCAAGGTAAAGATTCTAAGGAAAGAATCCTACTGGTACAAAGATATTGGATCGGTTGTAACAGTTGACCAGGTTTGA

Protein sequence

MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQV
Homology
[Close]
BLAST of Carg27171 vs. NCBI nr
Match: KAG7029913.1 (Photosystem I reaction center subunit IV A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.6 bits (475), Expect = 5.4e-44
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAA 60
           MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAA
Sbjct: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAA 60

Query: 61  TEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQV 102
           TEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQV
Sbjct: 61  TEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQV 101

[Close]
BLAST of Carg27171 vs. NCBI nr
Match: KAG6598956.1 (Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAA 60
           MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAA
Sbjct: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAA 60

Query: 61  TEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
           TEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ
Sbjct: 61  TEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 100

[Close]
BLAST of Carg27171 vs. NCBI nr
Match: XP_022929705.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 173.7 bits (439), Expect = 8.0e-40
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AA 60
           MAASNLSCIASGVLIPSPPTISSSSSFR SSFAIFPNNSRSSRFVIRA ADE      AA
Sbjct: 1   MAASNLSCIASGVLIPSPPTISSSSSFRLSSFAIFPNNSRSSRFVIRAAADEAAPPTPAA 60

Query: 61  PATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
           PATAAATEEPKPKPPPIGPKRGAKVKILRKES+WYKD+GSVVTVDQ
Sbjct: 61  PATAAATEEPKPKPPPIGPKRGAKVKILRKESFWYKDVGSVVTVDQ 106

[Close]
BLAST of Carg27171 vs. NCBI nr
Match: XP_023546723.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 8.9e-39
Identity = 94/106 (88.68%), Postives = 96/106 (90.57%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AA 60
           MAASNLSCIASGVLIPSPPTISSSSSFR SSFAIFPNNSRSSRFVIRAT DE      AA
Sbjct: 1   MAASNLSCIASGVLIPSPPTISSSSSFRLSSFAIFPNNSRSSRFVIRATVDEASPPTPAA 60

Query: 61  PATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
           P TAAATEEPKPKPPPIGPKRGAKVKILRKESYW+KD+G VVTVDQ
Sbjct: 61  PTTAAATEEPKPKPPPIGPKRGAKVKILRKESYWFKDVGLVVTVDQ 106

[Close]
BLAST of Carg27171 vs. NCBI nr
Match: XP_022997580.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 170.2 bits (430), Expect = 8.9e-39
Identity = 95/106 (89.62%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AA 60
           MAASNLSCIASGVLIPSPPTISSSSS R SSFAIFPN+SRSSRFVIRA ADE      AA
Sbjct: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFPNHSRSSRFVIRAAADEAAPPTPAA 60

Query: 61  PATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
           PATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKD+GSVVTVDQ
Sbjct: 61  PATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQ 106

[Close]
BLAST of Carg27171 vs. ExPASy Swiss-Prot
Match: Q41228 (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-15
Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN--SRSSRFVIRATADEAAPATA 60
           MA+ N++  AS  L+ +P   S++++ R++       N  S + R V+RA A+EAAP  A
Sbjct: 1   MASCNMASAASNFLVATPNVASNTNTSRTTMLFFSSKNYGSTAPRLVVRA-AEEAAPPAA 60

Query: 61  AATEEP------KPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
           AAT EP        KPPPIGPKRG KV+ILRKESYWYK  GSVV  DQ
Sbjct: 61  AATAEPAEAPVKAAKPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQ 107

[Close]
BLAST of Carg27171 vs. ExPASy Swiss-Prot
Match: Q41229 (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-15
Identity = 54/110 (49.09%), Postives = 76/110 (69.09%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSS--FAIFPNNSRSS--RFVIRATADEAAPA 60
           MA+S+++  ASG ++ +P   +S+++ R+S   F+   NN+ ++  R V+RA A+EAAP 
Sbjct: 1   MASSSMASAASGFMVATPNIATSNTAPRTSMLFFSSSKNNTTTNFPRLVVRA-AEEAAPP 60

Query: 61  TAAATEEPK------PKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
            A AT E +       KPPPIGPKRG KV++LRKESYWYK +GSVV VDQ
Sbjct: 61  AATATAEGEAPPAKAAKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQ 109

[Close]
BLAST of Carg27171 vs. ExPASy Swiss-Prot
Match: Q9S831 (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-14
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 14  LIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEP--------- 73
           ++P+  T  + +S   SS +  P  +  SR V+RA A++ APA++++ + P         
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMRNAGSRLVVRA-AEDPAPASSSSKDSPAAAAAPDGA 70

Query: 74  ---KPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
              KPKPPPIGPKRG+KVKILR+ESYW+K++GSVV VDQ
Sbjct: 71  TATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQ 108

[Close]
BLAST of Carg27171 vs. ExPASy Swiss-Prot
Match: P12354 (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-14
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 0 

Query: 20  TISSSSSFRSSSFAIFPNNS----RSSRFVIRATADEAAPATAAAT---EEPK--PKPPP 79
           +I+SS + R     + PN +    RS+R V+RA A+EAA A AAA+   E PK   KPPP
Sbjct: 3   SIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRA-AEEAAAAPAAASPEGEAPKAAAKPPP 62

Query: 80  IGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
           IGPKRG+KV+I+RKESYWYK +GSVV VDQ
Sbjct: 63  IGPKRGSKVRIMRKESYWYKGVGSVVAVDQ 91

[Close]
BLAST of Carg27171 vs. ExPASy Swiss-Prot
Match: Q9S714 (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE2 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.7e-13
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 0 

Query: 6   LSCIASGVLIPS--PPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATA----- 65
           ++  A+G ++ +  P  I   SS  ++  +  P  S  SR V+RA A++  PATA     
Sbjct: 3   MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGSRLVVRA-AEDTPPATASSDSS 62

Query: 66  --------AATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
                   A     K KPPPIGPKRG+KVKILRKESYWYK++GSVV VDQ
Sbjct: 63  STTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQ 111

[Close]
BLAST of Carg27171 vs. ExPASy TrEMBL
Match: A0A6J1EV28 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436207 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.9e-40
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AA 60
           MAASNLSCIASGVLIPSPPTISSSSSFR SSFAIFPNNSRSSRFVIRA ADE      AA
Sbjct: 1   MAASNLSCIASGVLIPSPPTISSSSSFRLSSFAIFPNNSRSSRFVIRAAADEAAPPTPAA 60

Query: 61  PATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
           PATAAATEEPKPKPPPIGPKRGAKVKILRKES+WYKD+GSVVTVDQ
Sbjct: 61  PATAAATEEPKPKPPPIGPKRGAKVKILRKESFWYKDVGSVVTVDQ 106

[Close]
BLAST of Carg27171 vs. ExPASy TrEMBL
Match: A0A6J1KA35 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492471 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.3e-39
Identity = 95/106 (89.62%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADE------AA 60
           MAASNLSCIASGVLIPSPPTISSSSS R SSFAIFPN+SRSSRFVIRA ADE      AA
Sbjct: 1   MAASNLSCIASGVLIPSPPTISSSSSSRLSSFAIFPNHSRSSRFVIRAAADEAAPPTPAA 60

Query: 61  PATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
           PATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKD+GSVVTVDQ
Sbjct: 61  PATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDVGSVVTVDQ 106

[Close]
BLAST of Carg27171 vs. ExPASy TrEMBL
Match: A0A0A0LJQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.6e-28
Identity = 85/110 (77.27%), Postives = 88/110 (80.00%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN----SRSSRFVIRATADEAAP- 60
           MAASNLSCIASGV+IPS  TISSSSS R SS A FP N    SRSSR VIRA +DEAAP 
Sbjct: 79  MAASNLSCIASGVVIPSSTTISSSSS-RLSSLAFFPKNSNSISRSSRLVIRA-SDEAAPP 138

Query: 61  -----ATAAATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
                 TAA TEEPKPKP PIGPKRGAKVKILRKESYWYKD+GSVVTVDQ
Sbjct: 139 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQ 186

[Close]
BLAST of Carg27171 vs. ExPASy TrEMBL
Match: A0A1S3B3T3 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 9.9e-28
Identity = 87/111 (78.38%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN----SRSSRFVIRATA-DEAAP 60
           MAASNLSCIASGV+IPS  TISSSSS R SS A FP N    SRSSR VIRA A DEAAP
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSS-RLSSLAFFPKNSNSISRSSRLVIRAAASDEAAP 62

Query: 61  -----ATAAAT-EEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
                A AAAT EEPKPKP PIGPKRGAKVKILRKESYWYKD+GSVVTVDQ
Sbjct: 63  PPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQ 112

[Close]
BLAST of Carg27171 vs. ExPASy TrEMBL
Match: A0A6J1HLT8 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465716 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.4e-27
Identity = 81/111 (72.97%), Postives = 85/111 (76.58%), Query Frame = 0 

Query: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNN----SRSSRFVIRATADEAA-- 60
           MAASNLSCIASGV+IPS PTISSSS  R SS A FP N    SRS R V+RA ADEAA  
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSS--RPSSVAFFPKNSISISRSCRLVVRAAADEAAAP 60

Query: 61  PATAAAT-----EEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
           P  AAAT     E PKPKP PIGPKRG KVKILR+ESYWYKD+GSVVTVDQ
Sbjct: 61  PPAAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQ 109

[Close]
BLAST of Carg27171 vs. TAIR 10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein )

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-15
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 14  LIPSPPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATAAATEEP--------- 73
           ++P+  T  + +S   SS +  P  +  SR V+RA A++ APA++++ + P         
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMRNAGSRLVVRA-AEDPAPASSSSKDSPAAAAAPDGA 70

Query: 74  ---KPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
              KPKPPPIGPKRG+KVKILR+ESYW+K++GSVV VDQ
Sbjct: 71  TATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQ 108

[Close]
BLAST of Carg27171 vs. TAIR 10
Match: AT2G20260.1 (photosystem I subunit E-2 )

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-14
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 0 

Query: 6   LSCIASGVLIPS--PPTISSSSSFRSSSFAIFPNNSRSSRFVIRATADEAAPATA----- 65
           ++  A+G ++ +  P  I   SS  ++  +  P  S  SR V+RA A++  PATA     
Sbjct: 3   MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGSRLVVRA-AEDTPPATASSDSS 62

Query: 66  --------AATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQ 101
                   A     K KPPPIGPKRG+KVKILRKESYWYK++GSVV VDQ
Sbjct: 63  STTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQ 111

The following BLAST results are available for this feature:
BLAST of Carg27171 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029913.15.4e-44100.00Photosystem I reaction center subunit IV A, chloroplastic [Cucurbita argyrosperm... [more]
KAG6598956.11.2e-43100.00Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argy... [more]
XP_022929705.18.0e-4090.57photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata... [more]
XP_023546723.18.9e-3988.68photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo sub... [more]
XP_022997580.18.9e-3989.62photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima][more]
BLAST of Carg27171 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q412283.2e-1550.00Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri... [more]
Q412293.2e-1549.09Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri... [more]
Q9S8312.7e-1446.46Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian... [more]
P123547.8e-1456.67Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=... [more]
Q9S7148.7e-1345.45Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thalian... [more]
BLAST of Carg27171 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EV283.9e-4090.57photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moscha... [more]
A0A6J1KA354.3e-3989.62photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima... [more]
A0A0A0LJQ12.6e-2877.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1[more]
A0A1S3B3T39.9e-2878.38photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=... [more]
A0A6J1HLT88.4e-2772.97photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima... [more]
BLAST of Carg27171 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G28750.11.9e-1546.46Photosystem I reaction centre subunit IV / PsaE protein [more]
AT2G20260.16.2e-1445.45photosystem I subunit E-2 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003375Photosystem I PsaE, reaction centre subunit IVPFAMPF02427PSI_PsaEcoord: 74..100
e-value: 4.7E-13
score: 48.6
IPR003375Photosystem I PsaE, reaction centre subunit IVPANTHERPTHR34549PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATEDcoord: 1..100
NoneNo IPR availableGENE3D2.30.30.50coord: 67..101
e-value: 9.1E-17
score: 62.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..76
NoneNo IPR availablePANTHERPTHR34549:SF7PHOTOSYSTEM I REACTION CENTER SUBUNIT IV Acoord: 1..100
IPR008990Electron transport accessory-like domain superfamilySUPERFAMILY50090Electron transport accessory proteinscoord: 73..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27171-RACarg27171-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0009522 photosystem I