Carg27155 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27155
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	chromatin remodeling protein EBS-like
Location	Carg_Chr11: 12053303 .. 12056982 (+)
RNA-Seq Expression	Carg27155
Synteny	Carg27155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTTCTGTAGCGTTGCGACTCGAACAGTATCTTAGATTATTAGCGGGGTTAATTCATGGCCAAGACTAAACCAGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACGTATTGTCTCTTTGGGAACAAACATGATTTTTGTTCTTCCTCTTGTTCTTCGTCTTCTTCTTTTGTTTTTGTGTTCAAAGCGACGCTTAATTGGTTTGCATTTTCTGCAATTGCTTTTGGTTGCTTCTGGTGAGTGTTCATTGATTCTTGGAATTGCATTTCTGTGGTTGTTGCAGCTGGTGATTGTGTGTTAATGCGACCGTCCGACTCCGATAAGCCTCCATACGTTGCTCGTGTTGAGAAAATTGAAGCTGATCATCGCAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCAATTGGAGGACGAAGGCAGTTCCATGGTGCTAAAGAGCTTTTTCTCTCGGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGAAAATGCACGGTGCACTCTTTTAAAAATTATACCAAACTTGATAATGTTGGTGCAGAGGACTACTTTTGCAGATTCGAGTACAAGGCTGCCACTGGCGGTTTCACACCAGACCGTGTAGCTGTGTGAGTTCTATGGTGTACCTTGTTCCTTACATGTTTCTACTAAAGCAATCTCATGTTAGTAATTATATAAGAAAATTTGTGGTTTATCTGTGTTTTGGGTTCTTTTTTTTTAATTGCAGGTATTGTAAATGTGAGATGCCATACAACCCAGATGACCTTATGGTTCAGTGTGAGGGATGCAAAGATTGGTAATCTCAACCTACTTTTGCAGCTATGTGCTTTGTTTCCTGCAAATTTAGAGAGGATAATCTGATGCTTGCTTGTTTTATAACTTCGTTATGTAGCTTTTGTTTGGAGATAGTGTCGTGTCATTCGCCTGTTGCAGGCTATTATATGTCGGTTTTTCTTGGAATTTTAAAGATAGGCCCTCTGTTCAGTAACTTGTTGTGCCATTGTTAGGGTGATGCACCAAAATGTGAACAAGAATGTGGAGATGAAAAGCCTTGTTTTTTCGTCGTCTCTATACTAACATATATGTTTTGCAGGTTTCATCCATCATGCATGGGAATGACCATTGACGAAGCAAAGAAGTTGGATAACTTTTTGTGTTCAGATTGTTCCTCAGAAAATGATGCGAAAAGGTCCTCGAATGCATTTCCAGTATCACCTTCTGCTGAGGCTAAGGTAAGGGATGTTGATTCATCTTTGCATGTGGGCAAAACTGTTAAAATCGTATGGCTTATGATAAAATGTAGAGGAGCTGTACATCATTTGGATTTTATGGCAGAATTACTTGAGAACATTATGTACCTCTTCTGGTCAAACCATTAGAAATTCAATAACTGGTATGCCTATAAGCAAAGTGATGATGTTGGCAAGAAATGCCAATAAAAGAAATCTAACATTTATGCTTTTGCTAAATTTTATTATCATGGAGATTTTTTGTGTAGACTACTGAATTCTCGTTATGTGCTGGGCTGAAGTTTGAAGTCCTATTAGGGTAATTCTTGTACGCATTCTGTGAGATCCCACATCGTTTGGAGAAAAGCATTCTTGTAGGGATGTGGAAACCTATCCCCAGTAGATGCGTTTTAAAAACTTTGAGGGGAGCCTGAAAAGGAAAACCCAAAGAGGACAATATCTGTTAGTGGTGAGCTTGGCCCGCTACACATTCTATGAAACTTGCTCCCTGAAACTCATTGCATAATATAGGTCTTGAACACAATTTGGTTTGGGTTGACTGATAACTTCATTTTAGTCGGTACTCCTTTGTCTCTAACTGGATGGTGGTACTGTATTTATGTTTATTTGGTTAGGTTGCAATCAATAAAATATGAAATGACACATAATTGAAGTTAAATAATTGATGTGCACTAGAAGGCACATTCGAACCTTTTGTTTTGCCTAGGAATACTCTTCCCTCCCGGACTGCCATTTGTATTGGAGCTCAATTTTCTTCTTGACGACTTTGGTTGTATTGGAGCTCTAAAGTTTGTCGTTTTTAAGCAACTCTGAGTCGACTATTGGAGCTCTAAAGTTACCATGTTGTTTCAAGTTCTTAAGCAGCTCTTGACGACTTTGTTTTAAGTTTCTCTGAGTCGACTATTGGAACTCTGAGTCAACTCTGAGTTGAACATAGTGTAGTATTAGTGAACAACTGATTTGGGACAATCCCCAATGTTTGGTGTAAAAGGGTCAGAGGCAGTGTAACACACTGAATTTCTGTCTCGTGCTCTCTGGTTTTTATTTATTGTGAAAGGATTTGGGCAATGAAACAGAAATATGGATTCTCATGTTGAATTCTCATGCTAGGTGGAACCAAAGCGTCGGAAGAGATGATTGGCTGATGAAGGTTCATGGAAGTGACAAGGAGGTGCGATTTCCTGCGCCTTTAGTTTCTGTTAATGTCGATGTTGTGGAAATGTACAGTGAAGATAAGATATTGTGCTCGCACAAACCAGAGGTTCTTTTTTTTTAAACTACAATGTTCAAATACATTTACGTGTGCTAAACCAGCGGGGCAATACTGTGATCTGTGTTTGTAGTCGTGGCTGCACGATGCGAAAAACTGCGGTTAATTTATTTAAGTGCTTAACTTTGAGAAACATTTGCACGGAAGTAGAAAGACGTAGGACAGAAAGTGTCTGGATTTGTTGTAATTTGCTTAGTTCTGGCTTTTCTTCAGAGTATATTGAACTGTTCCAAGCTCCCCTTCATTATTATTTTTTCTAGTTTCGCCTTTTTGGTGAAGAGAAAGGACAATGATGGGTTGTTTGGAGCGAGCTCGGTCTAGCAGTGGCATCTTTTACAGCCGCATCCATGAAAGAATGTTAGATTGCTGCTATGCTTCTTATATTGCAGGTGGTGCTTGGATCTTGAAGCCAGAAGAGTATATGGAGGTTGGTTGGTTGGTTGGTTCGTCCATGGCAGCTATAAAGTTTTGCCAACTTTGTGACTTGTGTTTGGACAATGCACCAAAGCTTGTTGCTTCTTCCTTCTGATCTGATCACCATGTTCCTCTTCTAGATAAGATTGGCCATGGTCATGAAGCATTTTCTAGGTAAAATGGTGCACTGGACAGATTTGATTATGTTGTTGACTTCCATTTCCAGGCAATGCAGCCGTTATATAGCCGCCATTGAGCTCTGAAATTCCTCACCAACTTTGATAGCACATTCTCATTCTCTATTTATGATCTCTCATCCCCAATTCTCACCATCCAAAGAAACTTGGTGAATATTCGAGTAAGAACATGAATTTAATTCCTTCTTCTATGGGTAAATTTTATATATACATTCATGTGCCTTTTATCTGTGCCCACGTTCTCTTTGTATTACTGCTCTACTGGTAAACTCGAGACGACCCTTATCATCGAAATTAAGAAAAATTGTCGAAACTAGCACAAATCTGGGAATTACTCTGTTCAGCTACAGCTTTATTCTAATCTAGTTTATCGTTTTAAATGTTATTATTGATCTCTTTTAGTCTGTCGAACTATAAGAATAAAATTCTAACGAGATTAAAATCTAACTTTCTTCAAATTACAAGGGCTAAATTTGTAATTTAACCATATGTCTCGAGTTCTAAATGA

mRNA sequence

AATCTTCTGTAGCGTTGCGACTCGAACAGTATCTTAGATTATTAGCGGGGTTAATTCATGGCCAAGACTAAACCAGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACGTATTGTCTCTTTGGGAACAAACATGATTTTTGTTCTTCCTCTTGTTCTTCGTCTTCTTCTTTTGTTTTTGTGTTCAAAGCGACGCTTAATTGCTGGTGATTGTGTGTTAATGCGACCGTCCGACTCCGATAAGCCTCCATACGTTGCTCGTGTTGAGAAAATTGAAGCTGATCATCGCAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCAATTGGAGGACGAAGGCAGTTCCATGGTGCTAAAGAGCTTTTTCTCTCGGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGAAAATGCACGGTGCACTCTTTTAAAAATTATACCAAACTTGATAATGTTGGTGCAGAGGACTACTTTTGCAGATTCGAGTACAAGGCTGCCACTGGCGGTTTCACACCAGACCGTGTAGCTGTGTATTGTAAATGTGAGATGCCATACAACCCAGATGACCTTATGGTTCAGTGTGAGGGATGCAAAGATTGGTTTCATCCATCATGCATGGGAATGACCATTGACGAAGCAAAGAAGTTGGATAACTTTTTGTGTTCAGATTGTTCCTCAGAAAATGATGCGAAAAGGTCCTCGAATGCATTTCCAGTATCACCTTCTGCTGAGGCTAAGGTGGAACCAAAGCGTCGGAAGAGATGATTGGCTGATGAAGGTTCATGGAAGTGACAAGGAGGTGCGATTTCCTGCGCCTTTAGTTTCTGTTAATGTCGATGTTGTGGAAATGTACAGTGAAGATAAGATATTGTGCTCGCACAAACCAGAGGTTCTTTTTTTTTAAACTACAATGTTCAAATACATTTACGTGTGCTAAACCAGCGGGGCAATACTGTGATCTGTGTTTGTAGTCGTGGCTGCACGATGCGAAAAACTGCGGTTAATTTATTTAAGTGCTTAACTTTGAGAAACATTTGCACGGAAGTAGAAAGACGTAGGACAGAAAGTGTCTGGATTTGTTGTAATTTGCTTAGTTCTGGCTTTTCTTCAGAGTATATTGAACTGTTCCAAGCTCCCCTTCATTATTATTTTTTCTAGTTTCGCCTTTTTGGTGAAGAGAAAGGACAATGATGGGTTGTTTGGAGCGAGCTCGGTCTAGCAGTGGCATCTTTTACAGCCGCATCCATGAAAGAATGTTAGATTGCTGCTATGCTTCTTATATTGCAGGTGGTGCTTGGATCTTGAAGCCAGAAGAGTATATGGAGGTTGGTTGGTTGGTTGGTTCGTCCATGGCAGCTATAAAGTTTTGCCAACTTTGTGACTTGTGTTTGGACAATGCACCAAAGCTTGTTGCTTCTTCCTTCTGATCTGATCACCATGTTCCTCTTCTAGATAAGATTGGCCATGGTCATGAAGCATTTTCTAGGTAAAATGGTGCACTGGACAGATTTGATTATGTTGTTGACTTCCATTTCCAGGCAATGCAGCCGTTATATAGCCGCCATTGAGCTCTGAAATTCCTCACCAACTTTGATAGCACATTCTCATTCTCTATTTATGATCTCTCATCCCCAATTCTCACCATCCAAAGAAACTTGGTGAATATTCGAGTAAGAACATGAATTTAATTCCTTCTTCTATGGGTAAATTTTATATATACATTCATGTGCCTTTTATCTGTGCCCACGTTCTCTTTGTATTACTGCTCTACTGGTAAACTCGAGACGACCCTTATCATCGAAATTAAGAAAAATTGTCGAAACTAGCACAAATCTGGGAATTACTCTGTTCAGCTACAGCTTTATTCTAATCTAGTTTATCGTTTTAAATGTTATTATTGATCTCTTTTAGTCTGTCGAACTATAAGAATAAAATTCTAACGAGATTAAAATCTAACTTTCTTCAAATTACAAGGGCTAAATTTGTAATTTAACCATATGTCTCGAGTTCTAAATGA

Coding sequence (CDS)

ATGGCCAAGACTAAACCAGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACGTATTGTCTCTTTGGGAACAAACATGATTTTTGTTCTTCCTCTTGTTCTTCGTCTTCTTCTTTTGTTTTTGTGTTCAAAGCGACGCTTAATTGCTGGTGATTGTGTGTTAATGCGACCGTCCGACTCCGATAAGCCTCCATACGTTGCTCGTGTTGAGAAAATTGAAGCTGATCATCGCAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCAATTGGAGGACGAAGGCAGTTCCATGGTGCTAAAGAGCTTTTTCTCTCGGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGAAAATGCACGGTGCACTCTTTTAAAAATTATACCAAACTTGATAATGTTGGTGCAGAGGACTACTTTTGCAGATTCGAGTACAAGGCTGCCACTGGCGGTTTCACACCAGACCGTGTAGCTGTGTATTGTAAATGTGAGATGCCATACAACCCAGATGACCTTATGGTTCAGTGTGAGGGATGCAAAGATTGGTTTCATCCATCATGCATGGGAATGACCATTGACGAAGCAAAGAAGTTGGATAACTTTTTGTGTTCAGATTGTTCCTCAGAAAATGATGCGAAAAGGTCCTCGAATGCATTTCCAGTATCACCTTCTGCTGAGGCTAAGGTGGAACCAAAGCGTCGGAAGAGATGA

Protein sequence

MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKVEPKRRKR

Homology

[Close]

BLAST of Carg27155 vs. NCBI nr
Match: KAG7022847.1 (Chromatin remodeling protein EBS [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 508.4 bits (1308), Expect = 3.4e-140
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 247

[Close]

BLAST of Carg27155 vs. NCBI nr
Match: XP_022930734.1 (chromatin remodeling protein EBS-like [Cucurbita moschata] >XP_022930735.1 chromatin remodeling protein EBS-like [Cucurbita moschata] >XP_022988944.1 chromatin remodeling protein EBS-like [Cucurbita maxima] >XP_022988945.1 chromatin remodeling protein EBS-like [Cucurbita maxima] >XP_023530935.1 chromatin remodeling protein EBS-like [Cucurbita pepo subsp. pepo] >KAG6589146.1 Chromatin remodeling protein EBS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 438.7 bits (1127), Expect = 3.3e-119
Identity = 215/247 (87.04%), Postives = 215/247 (87.04%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVR                                GDCV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVR-------------------------------PGDCV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 216

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 216

[Close]

BLAST of Carg27155 vs. NCBI nr
Match: XP_038888815.1 (chromatin remodeling protein EBS-like isoform X1 [Benincasa hispida] >XP_038888816.1 chromatin remodeling protein EBS-like isoform X1 [Benincasa hispida])

HSP 1 Score: 430.6 bits (1106), Expect = 8.9e-117
Identity = 210/247 (85.02%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVR                                GDCV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVR-------------------------------PGDCV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVHSFKNYTKL+NVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHSFKNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+FLCSDCSSEN+AKRSSNAFPVSPSAE KV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSENEAKRSSNAFPVSPSAEVKV 216

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 216

[Close]

BLAST of Carg27155 vs. NCBI nr
Match: XP_022136260.1 (chromatin remodeling protein EBS-like [Momordica charantia])

HSP 1 Score: 429.9 bits (1104), Expect = 1.5e-116
Identity = 210/247 (85.02%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVR                                G+CV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVR-------------------------------PGECV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVHSFKNYTKL+NVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHSFKNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+FLCSDCSSENDAKRS NAFPVSPSAEAKV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSENDAKRSLNAFPVSPSAEAKV 216

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 216

[Close]

BLAST of Carg27155 vs. NCBI nr
Match: XP_008455467.1 (PREDICTED: chromatin remodeling protein EBS-like isoform X1 [Cucumis melo])

HSP 1 Score: 429.9 bits (1104), Expect = 1.5e-116
Identity = 210/247 (85.02%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVR                                GDCV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVR-------------------------------PGDCV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVHSFKNYTKL+NVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHSFKNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+FLCSDCSSEN+AKRS NAFPVSPSAEAKV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSENEAKRSLNAFPVSPSAEAKV 216

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 216

[Close]

BLAST of Carg27155 vs. ExPASy Swiss-Prot
Match: F4JL28 (Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.3e-99
Identity = 170/239 (71.13%), Postives = 193/239 (80.75%), Query Frame = 0


Query: 2   AKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCVL 61
           +K K G+K+LDSYTIKGTNK+VR                               AGDCVL
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVR-------------------------------AGDCVL 69

Query: 62  MRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDV 121
           MRPSD+ KPPYVARVEKIEAD RNNVKV  RWYYRPEES+GGRRQFHGAKELFLSDHFDV
Sbjct: 70  MRPSDAGKPPYVARVEKIEADARNNVKVHCRWYYRPEESLGGRRQFHGAKELFLSDHFDV 129

Query: 122 QSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPD 181
           QSAHTIEGKC VH+FKNYT+L+NVGAEDY+CRFEYKAATG FTPDRVAVYCKCEMPYNPD
Sbjct: 130 QSAHTIEGKCIVHTFKNYTRLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPD 189

Query: 182 DLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 241
           DLMVQCEGCKDW+HP+C+GMTI+EAKKLD+F+C++CSS++D K+S N F  SP+ + KV
Sbjct: 190 DLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCAECSSDDDVKKSQNGFTSSPADDVKV 217

[Close]

BLAST of Carg27155 vs. ExPASy Swiss-Prot
Match: Q9FEN9 (Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.7e-74
Identity = 141/245 (57.55%), Postives = 164/245 (66.94%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           M K K  +K L SY +K  NK ++                                GD V
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQE-------------------------------GDAV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHR-NNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHF 120
           LMR S+  KP YVARVE IE D R ++ KVRVRWYYRPEESIGGRRQFHGAKE+FLSDHF
Sbjct: 61  LMRSSEPGKPSYVARVEAIETDARGSHAKVRVRWYYRPEESIGGRRQFHGAKEVFLSDHF 120

Query: 121 DVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYN 180
           D QSA TIEGKC VHSF +YTKLD+VG +D+FCRFEY + TG F PDRV V+CKCEMPYN
Sbjct: 121 DFQSADTIEGKCKVHSFSSYTKLDSVGNDDFFCRFEYNSTTGAFDPDRVTVFCKCEMPYN 180

Query: 181 PDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAK 240
           PDDLMVQCE C +WFHPSC+G TI+EAKK DNF C +CS +     +SN+   S + +AK
Sbjct: 181 PDDLMVQCEECSEWFHPSCIGTTIEEAKKPDNFYCEECSPQQQNLHNSNS--TSNNRDAK 212

Query: 241 VEPKR 245
           V  KR
Sbjct: 241 VNGKR 212

[Close]

BLAST of Carg27155 vs. ExPASy Swiss-Prot
Match: F4JGB7 (Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04260 PE=3 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 1.3e-70
Identity = 146/249 (58.63%), Postives = 171/249 (68.67%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTI-KGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDC 60
           MAKT+PG        + K   KI+ R + LG  ++ V                    GDC
Sbjct: 1   MAKTRPGVAFSSKIKLGKKDIKILGREILLGNVIVEV---------------GFFTVGDC 60

Query: 61  VLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHF 120
           VLMRPSD+ K PYVARVEKIEAD RNNVKV  RWYY PEES GGRRQ HGAKELFLSDHF
Sbjct: 61  VLMRPSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHF 120

Query: 121 DVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYN 180
           DVQSAHTIEGKC VH+FKNYT+L+NVG EDY+C F+YKAATG FTPDRVAVY KCEMPYN
Sbjct: 121 DVQSAHTIEGKCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYN 180

Query: 181 PDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSEND-AKRSSNAFPVS----- 240
            D+LM +   C    H +C+G+TI+EAKKL++F+C +CSS+ D  KR  N F  S     
Sbjct: 181 SDELM-ELLLCHYRVHLACVGVTIEEAKKLEHFVCVECSSDEDGVKRFQNGFASSTTNDL 233

Query: 241 -PSAEAKVE 242
            PSAE  ++
Sbjct: 241 KPSAEKMID 233

[Close]

BLAST of Carg27155 vs. ExPASy Swiss-Prot
Match: Q3UHR0 (BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahcc1 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-10
Identity = 41/128 (32.03%), Postives = 59/128 (46.09%), Query Frame = 0


Query: 51   KRRLIAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGA 110
            K  L  GDC +   +     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G 
Sbjct: 2516 KETLRIGDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYHPEETKLGKRQSDGK 2575

Query: 111  KELFLSDHFDVQSAHTIEGKCTVHSFKNYTKL----DNVGAED-YFCRFEYKAATGGF-T 170
              L+ S H D     TI  KC V   + Y ++         +D Y+    Y   TG   T
Sbjct: 2576 NALYQSCHEDENDVQTISHKCQVVGREQYEQMMRGRKYQDQQDLYYLAGTYDPTTGRLVT 2635

Query: 171  PDRVAVYC 173
             D V V C
Sbjct: 2636 ADGVPVLC 2643

[Close]

BLAST of Carg27155 vs. ExPASy Swiss-Prot
Match: E6ZGB4 (Lysine-specific demethylase phf2 OS=Dicentrarchus labrax OX=13489 GN=phf2 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 168 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDC 218
           V VYC C +PY+    M++C+ CKDWFH SC+G+  D+A  +D + C +C
Sbjct: 4   VPVYCICRLPYDVTQFMIECDACKDWFHGSCVGVDEDDAPDIDIYHCPNC 53

[Close]

BLAST of Carg27155 vs. ExPASy TrEMBL
Match: A0A6J1JN00 (chromatin remodeling protein EBS-like OS=Cucurbita maxima OX=3661 GN=LOC111486148 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.6e-119
Identity = 215/247 (87.04%), Postives = 215/247 (87.04%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVR                                GDCV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVR-------------------------------PGDCV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 216

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 216

[Close]

BLAST of Carg27155 vs. ExPASy TrEMBL
Match: A0A6J1ESB9 (chromatin remodeling protein EBS-like OS=Cucurbita moschata OX=3662 GN=LOC111437125 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.6e-119
Identity = 215/247 (87.04%), Postives = 215/247 (87.04%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVR                                GDCV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVR-------------------------------PGDCV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 216

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 216

[Close]

BLAST of Carg27155 vs. ExPASy TrEMBL
Match: A0A6J1C3E6 (chromatin remodeling protein EBS-like OS=Momordica charantia OX=3673 GN=LOC111007999 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 7.3e-117
Identity = 210/247 (85.02%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVR                                G+CV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVR-------------------------------PGECV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVHSFKNYTKL+NVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHSFKNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+FLCSDCSSENDAKRS NAFPVSPSAEAKV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSENDAKRSLNAFPVSPSAEAKV 216

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 216

[Close]

BLAST of Carg27155 vs. ExPASy TrEMBL
Match: A0A1S3C280 (chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495624 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 7.3e-117
Identity = 210/247 (85.02%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVR                                GDCV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVR-------------------------------PGDCV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVHSFKNYTKL+NVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHSFKNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+FLCSDCSSEN+AKRS NAFPVSPSAEAKV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSENEAKRSLNAFPVSPSAEAKV 216

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 216

[Close]

BLAST of Carg27155 vs. ExPASy TrEMBL
Match: A0A0A0K3H3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041880 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.3e-116
Identity = 209/247 (84.62%), Postives = 214/247 (86.64%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           MAKTKPGKKDLDSYTIKGTNKIVR                                GDCV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRH-------------------------------GDCV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120
           LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD
Sbjct: 61  LMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFD 120

Query: 121 VQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180
           VQSAHTIEGKCTVH+FKNYTKL+NVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP
Sbjct: 121 VQSAHTIEGKCTVHTFKNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNP 180

Query: 181 DDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 240
           DDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+FLCSDCSSEN+AKRS NAFPVSPSAEAKV
Sbjct: 181 DDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSENEAKRSLNAFPVSPSAEAKV 216

Query: 241 EPKRRKR 248
           EPKRRKR
Sbjct: 241 EPKRRKR 216

[Close]

BLAST of Carg27155 vs. TAIR 10
Match: AT4G22140.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 372.1 bits (954), Expect = 3.5e-103
Identity = 176/246 (71.54%), Postives = 199/246 (80.89%), Query Frame = 0


Query: 2   AKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCVL 61
           +K K G+K+LDSYTIKGTNK+VR                               AGDCVL
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVR-------------------------------AGDCVL 69

Query: 62  MRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDV 121
           MRPSD+ KPPYVARVEKIEAD RNNVKV  RWYYRPEES+GGRRQFHGAKELFLSDHFDV
Sbjct: 70  MRPSDAGKPPYVARVEKIEADARNNVKVHCRWYYRPEESLGGRRQFHGAKELFLSDHFDV 129

Query: 122 QSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPD 181
           QSAHTIEGKC VH+FKNYT+L+NVGAEDY+CRFEYKAATG FTPDRVAVYCKCEMPYNPD
Sbjct: 130 QSAHTIEGKCIVHTFKNYTRLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPD 189

Query: 182 DLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKVE 241
           DLMVQCEGCKDW+HP+C+GMTI+EAKKLD+F+C++CSS++D K+S N F  SP+ + KVE
Sbjct: 190 DLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCAECSSDDDVKKSQNGFTSSPADDVKVE 224

Query: 242 PKRRKR 248
            KRRKR
Sbjct: 250 TKRRKR 224

[Close]

BLAST of Carg27155 vs. TAIR 10
Match: AT4G22140.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-100
Identity = 170/239 (71.13%), Postives = 193/239 (80.75%), Query Frame = 0


Query: 2   AKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCVL 61
           +K K G+K+LDSYTIKGTNK+VR                               AGDCVL
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVR-------------------------------AGDCVL 69

Query: 62  MRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDV 121
           MRPSD+ KPPYVARVEKIEAD RNNVKV  RWYYRPEES+GGRRQFHGAKELFLSDHFDV
Sbjct: 70  MRPSDAGKPPYVARVEKIEADARNNVKVHCRWYYRPEESLGGRRQFHGAKELFLSDHFDV 129

Query: 122 QSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPD 181
           QSAHTIEGKC VH+FKNYT+L+NVGAEDY+CRFEYKAATG FTPDRVAVYCKCEMPYNPD
Sbjct: 130 QSAHTIEGKCIVHTFKNYTRLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPD 189

Query: 182 DLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKV 241
           DLMVQCEGCKDW+HP+C+GMTI+EAKKLD+F+C++CSS++D K+S N F  SP+ + KV
Sbjct: 190 DLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCAECSSDDDVKKSQNGFTSSPADDVKV 217

[Close]

BLAST of Carg27155 vs. TAIR 10
Match: AT4G39100.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 278.1 bits (710), Expect = 6.9e-75
Identity = 141/245 (57.55%), Postives = 164/245 (66.94%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           M K K  +K L SY +K  NK ++                                GD V
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQE-------------------------------GDAV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHR-NNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHF 120
           LMR S+  KP YVARVE IE D R ++ KVRVRWYYRPEESIGGRRQFHGAKE+FLSDHF
Sbjct: 61  LMRSSEPGKPSYVARVEAIETDARGSHAKVRVRWYYRPEESIGGRRQFHGAKEVFLSDHF 120

Query: 121 DVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYN 180
           D QSA TIEGKC VHSF +YTKLD+VG +D+FCRFEY + TG F PDRV V+CKCEMPYN
Sbjct: 121 DFQSADTIEGKCKVHSFSSYTKLDSVGNDDFFCRFEYNSTTGAFDPDRVTVFCKCEMPYN 180

Query: 181 PDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAK 240
           PDDLMVQCE C +WFHPSC+G TI+EAKK DNF C +CS +     +SN+   S + +AK
Sbjct: 181 PDDLMVQCEECSEWFHPSCIGTTIEEAKKPDNFYCEECSPQQQNLHNSNS--TSNNRDAK 212

Query: 241 VEPKR 245
           V  KR
Sbjct: 241 VNGKR 212

[Close]

BLAST of Carg27155 vs. TAIR 10
Match: AT4G04260.1 (Bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-68
Identity = 128/187 (68.45%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 62  MRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDV 121
           MRPSD+ K PYVARVEKIEAD RNNVKV  RWYY PEES GGRRQ HGAKELFLSDHFDV
Sbjct: 1   MRPSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFDV 60

Query: 122 QSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPD 181
           QSAHTIEGKC VH+FKNYT+L+NVG EDY+C F+YKAATG FTPDRVAVY KCEMPYN D
Sbjct: 61  QSAHTIEGKCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYNSD 120

Query: 182 DLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSEND-AKRSSNAFPVS------P 241
           +LM +   C    H +C+G+TI+EAKKL++F+C +CSS+ D  KR  N F  S      P
Sbjct: 121 ELM-ELLLCHYRVHLACVGVTIEEAKKLEHFVCVECSSDEDGVKRFQNGFASSTTNDLKP 180

[Close]

BLAST of Carg27155 vs. TAIR 10
Match: AT4G39100.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-61
Identity = 115/194 (59.28%), Postives = 130/194 (67.01%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRRIVSLGTNMIFVLPLVLRLLLLFLCSKRRLIAGDCV 60
           M K K  +K L SY +K  NK ++                                GD V
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQE-------------------------------GDAV 60

Query: 61  LMRPSDSDKPPYVARVEKIEADHR-NNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHF 120
           LMR S+  KP YVARVE IE D R ++ KVRVRWYYRPEESIGGRRQFHGAKE+FLSDHF
Sbjct: 61  LMRSSEPGKPSYVARVEAIETDARGSHAKVRVRWYYRPEESIGGRRQFHGAKEVFLSDHF 120

Query: 121 DVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYN 180
           D QSA TIEGKC VHSF +YTKLD+VG +D+FCRFEY + TG F PDRV V+CKCEMPYN
Sbjct: 121 DFQSADTIEGKCKVHSFSSYTKLDSVGNDDFFCRFEYNSTTGAFDPDRVTVFCKCEMPYN 163

Query: 181 PDDLMVQCEGCKDW 194
           PDDLMVQCE C +W
Sbjct: 181 PDDLMVQCEECSEW 163

The following BLAST results are available for this feature:

BLAST of Carg27155 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022847.1	3.4e-140	100.00	Chromatin remodeling protein EBS [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022930734.1	3.3e-119	87.04	chromatin remodeling protein EBS-like [Cucurbita moschata] >XP_022930735.1 chrom...	[more]
XP_038888815.1	8.9e-117	85.02	chromatin remodeling protein EBS-like isoform X1 [Benincasa hispida] >XP_0388888...	[more]
XP_022136260.1	1.5e-116	85.02	chromatin remodeling protein EBS-like [Momordica charantia]	[more]
XP_008455467.1	1.5e-116	85.02	PREDICTED: chromatin remodeling protein EBS-like isoform X1 [Cucumis melo]	[more]

BLAST of Carg27155 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JL28	2.3e-99	71.13	Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=...	[more]
Q9FEN9	9.7e-74	57.55	Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=...	[more]
F4JGB7	1.3e-70	58.63	Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04...	[more]
Q3UHR0	5.8e-10	32.03	BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahc...	[more]
E6ZGB4	9.9e-10	46.00	Lysine-specific demethylase phf2 OS=Dicentrarchus labrax OX=13489 GN=phf2 PE=3 S...	[more]

BLAST of Carg27155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN00	1.6e-119	87.04	chromatin remodeling protein EBS-like OS=Cucurbita maxima OX=3661 GN=LOC11148614...	[more]
A0A6J1ESB9	1.6e-119	87.04	chromatin remodeling protein EBS-like OS=Cucurbita moschata OX=3662 GN=LOC111437...	[more]
A0A6J1C3E6	7.3e-117	85.02	chromatin remodeling protein EBS-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A1S3C280	7.3e-117	85.02	chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0K3H3	1.3e-116	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041880 PE=4 SV=1	[more]

BLAST of Carg27155 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22140.2	3.5e-103	71.54	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G22140.1	1.6e-100	71.13	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G39100.1	6.9e-75	57.55	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G04260.1	2.1e-68	68.45	Bromo-adjacent homology (BAH) domain-containing protein	[more]
AT4G39100.2	4.3e-61	59.28	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 171..218 e-value: 4.7E-10 score: 49.4
IPR001025	Bromo adjacent homology (BAH) domain	SMART	SM00439	BAH_4	coord: 52..167 e-value: 2.5E-41 score: 153.3
IPR001025	Bromo adjacent homology (BAH) domain	PFAM	PF01426	BAH	coord: 56..166 e-value: 2.2E-22 score: 79.2
IPR001025	Bromo adjacent homology (BAH) domain	PROSITE	PS51038	BAH	coord: 52..167 score: 23.126047
IPR043151	Bromo adjacent homology (BAH) domain superfamily	GENE3D	2.30.30.490		coord: 48..164 e-value: 3.6E-29 score: 103.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 165..232 e-value: 1.1E-20 score: 74.8
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 171..219 e-value: 1.6E-10 score: 40.7
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 169..220 score: 9.2497
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..247
None	No IPR available	PANTHER	PTHR46364	OS08G0421900 PROTEIN	coord: 1..24 coord: 55..247
None	No IPR available	PANTHER	PTHR46364:SF12	SUBFAMILY NOT NAMED	coord: 1..24 coord: 55..247
None	No IPR available	CDD	cd04714	BAH_BAHCC1	coord: 57..187 e-value: 9.10268E-57 score: 175.283
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 172..217
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 161..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27155-RA	Carg27155-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046872	metal ion binding