
Carg27080 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTTCTTCTTTCTAGGGCAGCAGCACTGGCAGCACTCCGCTCGTAGCCGCCGGTAACCCCTCTCTTCTTCTCTCTCCTGAATGCCCGTTCGTTTTTACGTTTTCACCGTTATGTTTTCTTTCTGTCTTTGTGTACTCAAAACAAGAAAATATTTCCGTCTTTTACTCACAAGAATCAACAGTCTTGTGCAATTTATCTATTGCCTCAAGACTTCGGGATCTTTCCCTTAAGTCTTGCCTCTTGTTTTGATCTGTTTGTTACAGTTAGAGTGTTGTGTTTTCATCCTTGATTTCGTTTATTAGTGCTATTCTTATTGATAAATTTCCTCCCGTTTCGTTGTTCGGTTCTGGCAGGAGGGTAATTTTGATACAGGGTTTCAGCGATGGCACCTAAAGGTATGTGCGCATTGTGTTTTTGTGGTTTCAGTACGCAATGTTCGTTTATTCGAATCAGTGTGTTCCATTGTAATCTATTACGGGCATATTACTCGAAAATTTATGATATCAACTTCTGCTCTGAGCTACATGGGTCAGTGGATTTCTATGTGCCTGGTGTTTATAGAAATTTATTTTCTTCTATTCCTATGTATACTATTTGGTGTTAGGATTTAAACATATTATATTGCTGAGAAGATTAGTTAGTTGTGACCAATACTCTCAATATTTTCCAGTATAGTTGGTACCGATCCTAGAAATTGTTAGTGCATTATGTCCTCTTTCATTTGGTTGTTTTCTCCTCGTTTGATGGAAAACAAATTGATGTTTTAAATTTGAATTGTTTTGAGAATATACTGGAAGAATGGCATCTGAGCTCTTAATGTACTGTACTAACTGGTTGCTCTTGAGCTGTTGCAATTCTTTGTTGTGTTCTATTCTAAATTGATGGTTTTGCAGCTGAAAACACCAAGAAGGCTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAGTCTGGGCCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACATTCCATCGCCCTAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGACTTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGTACGCATGTATGAACTTAGAAGTTACACTTGCCACCAAAGTTTACCATCATCATTTACCTAGGTGGCATGGAACAGAAGAAATAATAGTTCGTATGGTTCTTTCTAGCTTCGCCAATGGCAATACCTTAGCTCTAACTGCTTGGCTGTTTGGGTTCGATAGTGCATGCCATTTTATCTTCAGATATTTTTCATAATGAATAAAGTGAAAATTGATTTGTTAATTGCATGAAGTCTACATTGAAATTATGACTAGTGTCCTAACTATATTCTTGGTATGCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATC TTTCTTCTTTCTAGGGCAGCAGCACTGGCAGCACTCCGCTCGTAGCCGCCGGGTTTCAGCGATGGCACCTAAAGCTGAAAACACCAAGAAGGCTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAAAGGATAGGAATCCCAATGCGACTTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATC ATGGCACCTAAAGCTGAAAACACCAAGAAGGCTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAAAGGATAGGAATCCCAATGCGACTTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGACTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATC MAPKAENTKKADPKAQALKTAKAVKRIGIPMRLPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII Homology
BLAST of Carg27080 vs. NCBI nr
Match: KAG7030529.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
BLAST of Carg27080 vs. NCBI nr
Match: XP_022941924.1 (60S ribosomal protein L23a-like [Cucurbita moschata]) HSP 1 Score: 204.5 bits (519), Expect = 5.2e-49 Identity = 116/152 (76.32%), Postives = 118/152 (77.63%), Query Frame = 0
BLAST of Carg27080 vs. NCBI nr
Match: KAG6599854.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 203.4 bits (516), Expect = 1.2e-48 Identity = 116/152 (76.32%), Postives = 117/152 (76.97%), Query Frame = 0
BLAST of Carg27080 vs. NCBI nr
Match: XP_023541685.1 (60S ribosomal protein L23a-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 200.7 bits (509), Expect = 7.5e-48 Identity = 114/152 (75.00%), Postives = 116/152 (76.32%), Query Frame = 0
BLAST of Carg27080 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia]) HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47 Identity = 114/153 (74.51%), Postives = 117/153 (76.47%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2) HSP 1 Score: 184.5 bits (467), Expect = 7.2e-46 Identity = 109/154 (70.78%), Postives = 115/154 (74.68%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 7.2e-46 Identity = 108/154 (70.13%), Postives = 115/154 (74.68%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 3.6e-45 Identity = 108/154 (70.13%), Postives = 114/154 (74.03%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 1.8e-44 Identity = 107/157 (68.15%), Postives = 110/157 (70.06%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 1.8e-44 Identity = 107/154 (69.48%), Postives = 113/154 (73.38%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy TrEMBL
Match: A0A6J1FPV3 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447140 PE=3 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49 Identity = 116/152 (76.32%), Postives = 118/152 (77.63%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47 Identity = 114/153 (74.51%), Postives = 117/153 (76.47%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy TrEMBL
Match: A0A6J1JKM4 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487755 PE=3 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47 Identity = 113/152 (74.34%), Postives = 117/152 (76.97%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy TrEMBL
Match: W9R299 (50S ribosomal protein L23, chloroplastic OS=Morus notabilis OX=981085 GN=L484_025406 PE=3 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47 Identity = 114/156 (73.08%), Postives = 116/156 (74.36%), Query Frame = 0
BLAST of Carg27080 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47 Identity = 114/156 (73.08%), Postives = 118/156 (75.64%), Query Frame = 0
BLAST of Carg27080 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB ) HSP 1 Score: 188.0 bits (476), Expect = 4.7e-48 Identity = 109/148 (73.65%), Postives = 114/148 (77.03%), Query Frame = 0
BLAST of Carg27080 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA ) HSP 1 Score: 184.5 bits (467), Expect = 5.1e-47 Identity = 109/154 (70.78%), Postives = 115/154 (74.68%), Query Frame = 0
BLAST of Carg27080 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA ) HSP 1 Score: 184.5 bits (467), Expect = 5.1e-47 Identity = 109/154 (70.78%), Postives = 115/154 (74.68%), Query Frame = 0
BLAST of Carg27080 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB ) HSP 1 Score: 184.5 bits (467), Expect = 5.1e-47 Identity = 108/154 (70.13%), Postives = 115/154 (74.68%), Query Frame = 0
BLAST of Carg27080 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB ) HSP 1 Score: 184.5 bits (467), Expect = 5.1e-47 Identity = 108/154 (70.13%), Postives = 115/154 (74.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|