Carg26945 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26945
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 3637481 .. 3642614 (+)
RNA-Seq ExpressionCarg26945
SyntenyCarg26945
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAGAGAGAAATTTATTGCTTTTTTAGAGAGTTGTGCGCCGTGTGGGTTTACACCTTTCTCCTTTGTTGGTGGCCATCCGCCATTGTTGTCTTGAGCGAGCTTCTTCTTGTTCTTCTGGTTTGTTTTCATTTGGCGGCGTGGTAGAGGAACTGCTGTGGATTTGTGAGTTTAAGAGGGTTTTTTGGAGATGGGTTCTGCTAGTTTAGCAGCAGATGCAGGGACCATGGTAGCTCTGGTCGCCATTTTTGTGTTTTGGGGCTGGTTTTTCTGTGTGCTGTGCGGCGAGGATGGAATCTGCTTCCCGTCAGAAGCTTGAGGTCCGAAAACACCTCCGGCGCTTGAACAAGCCGGCTGTTAAAACCATCGAGGTTTGTAATCTGTATTCATTTTGGGTTTGGTTTAAGTGGATCTTGCTCTGTTTTGTTTCTGAAATGCTAGAAAATGGGGTGGAAATGGTTGGATTCCTTTGTTTTCTCGGGAACCAAACAAGGATAAACATGTTCCACTTTCTCCCCTTTTCTACTCTAATGGGGTTTCTGTTTTTTCCGGGAAAATGTTTGGATTCCTTTGTTTTCTCAGGAACCAAACAACGATGAACATATTCCACTTTCTTCCCGTTTCTACTCAAATGGGGTTTGCTTGTAGTGGCTGTCTGTTTGGTTTCCGGGAAAATGTTTGGATTCCTTTGTTTTCTCGGGAACCAAACAAAGATGAACACATTCCCACTTTCTTCCCTTTTCTACTGAAGTGGGGTTTCTGGGAAAATGGTTGGATTCCTCTGTTTTCTCAGGAACCGAACAAGGATGAACATGTTCCACTTTCTTCCCTTTTCTACTCAAATGGGGTTTCTGTTTTTTCCGGGTAAATATTTGGATTCCTTTGTTTTCTCAGGAACCAGACAAGGGTGAACTTATTCCACTTCCTTCCATTTTCTACTCAAATGGGGGTTGCTTGTAATGGCGGTCTGTTTGGTTTCCGGGAAAATGTTTGGATTCCTCTGTTTTCTCGGGAACCAAACAAGGATGAACATATTCCACTTCCTTCCTTTTCTACTTTAATGGGGTTTCTGTTTGGTTTCCGGGAAAATGTTTGGATTCCTTTGTTTTCTCGGGAGCCAAACAAGGATGAACATGTTCCACTTTCTTCCCTTTTCTACTCGAATGGGGTTTCTGTTTTTTCCGGGAAAATGTTTGGATTCTTCTGTTTTCTCAGGAACCAAACAAGGAAGAACATATTCCACTTTCTCTTGAAATCTCTGTCTTAACCTTCTTAGGAGCCAAACACCATACAATGTTGTTCTTATGTTTGTTCTATTGGTTGAACCAGAGCCCAGATGGGGACCTAATTGACTGTGTTCATATGTCTCGTCAACCTGCCATTTGACCATCCTTTCCTTAAAGACCACAAAAATCCAGGTTGTTCTTGTTTCATCAGTTCATTACCATATTTTTCTCTCATTTTCTCTACGATCCATAAGTTTTTTGTTCATCTTGGTTCTATGTGTTCTTCAGACGAGGCCAACTTTTCATCCAGAATGGCTAGATGAGAGCAAAGTAGCTGAGAAAGCCAGTGAAAAACCGAATCCAATTAAGCAACTATGGCATGTTAATGGAAAGTGCCCTGAAGGTACCATCCCCATTAGAAGAACCAAACATGAGGATGTTTTGAGAGCAAGTTCAGTGAAGAGATATGGAAGAAAAAAGCACAGATCAGCCCCAATACCCCCTAGATCTGCTGAGCCTGATCTCATCAACCAAAGTGGCCATCAGGTAATCATCCATTTCTTGGCTTTTTTGTAACCGCCCAAGCCTACCACGAGCTGATATTGTCTTCTTTTAACTTTCCCTTTCGAGCTTCCCCTCAAGATTTTTAAAACGCGTGTGCTAGAGAGATGTTTTCACACCTCCTCTCCAACCGATATGGGTTTTCACAATCCTCCCCCTTTTGGGGCCCAGCTTCCTCGTGCACTCGTTCCCTTCTCTAACCCTCCAATCCACCCCCTTTGAGACTCAGCCTCCTCGCTGACACGTTGCCCGGTGTCTGGCTCTGATACCATTTGTAACAGCCCAAGTCCATCACTAGTAGACATTGTCCTCTTCGGGCTTTTTCCCTTTCGGGCTCCCCCTCAAAGTTTTTAAAATGCTTCTGCTAGTGAAAGGTTTTCACACCTTGTTTCGTTTTCCTCCCCATCCGATGTAGTATCTCACAATCCACCCCCCTTCGAGGTCTAATGTCCTCGTTGGCACTCGTTCCCTTCGACAATCGATGTGGGATCCTCCAATCCACCCTCCCTTCGAGGTCCAATGTCCTCGTTGGCACTCGTTCCCTTCAACAATCGATGTGGGATCCTCCTTCCGGTGTCTTGCTTTGATACCATTTGTAACAGCCCAAGCTCACCGCTAGCAGATAGTTCTTTTTGGGCTTTTCCTTCTAAGCTTCTCCTCAAGGTTTTTAAAACGCGTCCACTAGGGAGAGGTTTTCACACCCTTAAGAATGTTTCGTTCTCCTCCCCAACAGATATGGGATCTCACACTGTTCACTTACATGTAATCCTTTTCGGCTCTGATTTTCTTCTTTTTGGGCTTGTTTAGCATGCCATAGCTATGCTCAGAAGGAAGACAAGTATTATGGACAAAGCCCACTATGAACGGTGGGAGTACCCAGCATTCACAGCCAAATGAGTTTCGCTTATCACAGCTTATATTGGGAGGCCTCGTTGCTAAGATCTTATAACAGCATTGAAGCTGGTTGGCAGGTTTCATCCTTTTCATTATCTTTCATGAACTTATATAACCAGAAAGTGTCCATAACTTCTTGTTCTTCCACAAACAGCGTCAGTCCGAATCTCTACGCGCGACAACAACACAGACTCTTCACATACTATACGACGCGGTGAGCCCGACCATACATTCGATCGTTACTGTTTCGTTATTTTGCTTCAAGTTAGCGAGGCGTTCTCGTAATAATCTTTCTTCTAAATGTTTGCTTATAGAGCGATGCCATATCAAGCTACAGGCTGTTACAAACCTCCTCTGCTCGGGCTTTATTCAAAATCAACAGCGATATCGCAATGGAGCAAGCATTTCCCCTGCTCTCGGCGTTCGAAATTCGCAATACGAAACAGTATACTTGTCTGAAGGTAACAGCCAAAAACAGGCCTTTATTAGAGTTTTGAATTAGCGCATGAGAGTTTCTGAAACAAGGAGAAAAAATCCAATGTCCATGAAAATGATAGTAACGATATAGATAAGCATGTGGGGCATCAGTTTATGGTTGTTGTCCAACCCAGCTGATATCTATACACATTTCAAATTCTTTGGCCATATCAATAGTTACCTTACAACAATAAATGAGACACTAATGAGGCGAAAAACAAGTGGCATTGCTATGTTCTTATGCTCCTAAGAATCTTTTGGCCTTAACCATGACAGGTTGGCCTAAGGAAAAAAGGGGACGATTAACTGTAAACACGAATACTTTTAGGAATTAGAGGGACCGTCGAACTGTCGTCTCCTTCTATAGATTAGTCATAGAGTGTATGCAAGTTGTTTTAAACACATTCTTTCGTTGTAATCAAAACTCAACCAAACACATCGTTTATTAGTCGGGGTGTATCTCCCCCACCTATCACGTCTCTTGACGAGACGCCACAACCGAGTGTAACCGAGTCTCAGGTCCTTTCGGTTGTGGGCTTTGCATCATTTATTAGTCGGGGTGTATCAGGTCTCTTGATGAGATGCCACAACTGAGTATAACCGAGTCTCAGATCCTTTTGGTTGTGGGCTTTGCATCATTTATTAGTCGGGGTGTATGTCCCCTACCATGTCTCTTGATGAGACGCCACAACCGAGTATAACCGAGTCTCAGGTCCTTTCGGTTGTGGGCTATTAGTCAGGGTGTATCTCCCCTACCACGTCTCTTAACAAGACACTACAACCGAGTACAACCGAGTCTCAGGTCCTTTCATAATGTATCTCCCCTACCACGTCTCATGACGAGACCCCACAACCGAGTACAACCGACTCTCAGGTCCTTCAATTGTGAGCTTTGCAGATCTGAAATGGTTTATTTGATGATTTTTATGTAGACCAAAAAAGGGGCATTGGTGGATGCAATTTGGCAATGGCTACGTAATGGGATATTGGCTTCATTCTATCTCATATTTAGCGACAGTGCCATCTCCATGATTGAGTGGGGAGGTGAGTGGTAAACTCAGAGCCAATGGACAGCACACTTCAACACAAATGGGGAGCGCCATTTCCAGATGAAGGATTGGTAAAGCAAGCTATTTAGAACATTCAAGTGTTGATGCATCGTTCAAACAATTCAAACCACCAAAAGCATTGCACATTCCACAGAGCAGCCTGATTGCATGATAGTTCAAACAGGAAAGCATGGGGATTGGGGTCACTTCTTTTTACTATGGAGGCCCTGGTAGGGAACCCCAATTGCCCATCGAATGAAGGTGAAATTCGCCCATTGTTACCCTCCCGAAACTCTTCTCTCTTCTCTCTCTGTAAACTACTACCGTCTTAGTGCTAGTGTTAGGGGGTACATGTGTCATTTTCTTGCTGATGAAAGTTATTGGGTCTCTGTCATTGTCTTTTATGTAACAAAGATTCTGTAGCCCTGTAAGTGGTGGGGTAGGGGTTGGGGTAGGGGTAGGGGGGTAGGGTAGGGGAAGGCCCAAGTTTCTTAAAAGCCTGATAGAAACAGGGCCCTTTTGGCTATCATCCATGATGTGTGTGTATTTTAATTAGTTTGTTTAGTATACTCCTCTCTTTGGAGTTGCTTTATCACATGAAGAAGTAATGGGTTTTGATTGTTGTAGATTGTGAGGAATATTGTTCGAAAGATAAGGTCTTATTATGTTCGTTAACCGACGCTCTAGAATGATTGCATAAAGTTTCTTATACAAACATGAACCGAGATAAAGGTCCACATATCAACATTATGGTCGATTGAGTCTAGGTCAAGTGGTACACTGGGAAGAAGAATAAACGAGTCTAGAATGATTATAAAAAGTTTCTTACAAGAACATGAATCGAGATAAGGTTGTGCAATAATTTGATTTGATTCTCCACTTCTAGTGGTATCTTAACTCTTTGAATTTTCCACTGATCAACATTATG

mRNA sequence

GTGAGAGAGAAATTTATTGCTTTTTTAGAGAGTTGTGCGCCGTGTGGGTTTACACCTTTCTCCTTTGTTGGTGGCCATCCGCCATTGTTGTCTTGAGCGAGCTTCTTCTTGTTCTTCTGGTTTGTTTTCATTTGGCGGCGTGGTAGAGGAACTGCTGTGGATTTGTGAGTTTAAGAGGGTTTTTTGGAGATGGGTTCTGCTAGTTTAGCAGCAGATGCAGGGACCATGGTAGCTCTGGTCGCCATTTTTGTGTTTTGGGGCTGGTTTTTCTGTGTGCTGTGCGGCGAGGATGGAATCTGCTTCCCGTCAGAAGCTTGAGGTCCGAAAACACCTCCGGCGCTTGAACAAGCCGGCTGTTAAAACCATCGAGAGCCCAGATGGGGACCTAATTGACTGTGTTCATATGTCTCGTCAACCTGCCATTTGACCATCCTTTCCTTAAAGACCACAAAAATCCAGACGAGGCCAACTTTTCATCCAGAATGGCTAGATGAGAGCAAAGTAGCTGAGAAAGCCAGTGAAAAACCGAATCCAATTAAGCAACTATGGCATGTTAATGGAAAGTGCCCTGAAGGTACCATCCCCATTAGAAGAACCAAACATGAGGATGTTTTGAGAGCAAGTTCAGTGAAGAGATATGGAAGAAAAAAGCACAGATCAGCCCCAATACCCCCTAGATCTGCTGAGCCTGATCTCATCAACCAAAGTGGCCATCAGCATGCCATAGCTATGCTCAGAAGGAAGACAAGTATTATGGACAAAGCCCACTATGAACGGTGGGAGTACCCAGCATTCACAGCCAAATGAGTTTCGCTTATCACAGCTTATATTGGGAGGCCTCGTTGCTAAGATCTTATAACAGCATTGAAGCTGGTTGGCAGCGTCAGTCCGAATCTCTACGCGCGACAACAACACAGACTCTTCACATACTATACGACGCGAGCGATGCCATATCAAGCTACAGGCTGTTACAAACCTCCTCTGCTCGGGCTTTATTCAAAATCAACAGCGATATCGCAATGGAGCAAGCATTTCCCCTGCTCTCGGCGTTCGAAATTCGCAATACGAAACAGTATACTTGTCTGAAGTCGGGGTGTATGTCCCCTACCATGTCTCTTGATGAGACGCCACAACCGAGTATAACCGAGTCTCAGACCAAAAAAGGGGCATTGGTGGATGCAATTTGGCAATGGCTACGTAATGGGATATTGGCTTCATTCTATCTCATATTTAGCGACAGTGCCATCTCCATGATTGAGTGGGGAGGTGAGTGGTAAACTCAGAGCCAATGGACAGCACACTTCAACACAAATGGGGAGCGCCATTTCCAGATGAAGGATTGGTAAAGCAAGCTATTTAGAACATTCAAGTGTTGATGCATCGTTCAAACAATTCAAACCACCAAAAGCATTGCACATTCCACAGAGCAGCCTGATTGCATGATAGTTCAAACAGGAAAGCATGGGGATTGGGGTCACTTCTTTTTACTATGGAGGCCCTGGTAGGGAACCCCAATTGCCCATCGAATGAAGGTGAAATTCGCCCATTGTTACCCTCCCGAAACTCTTCTCTCTTCTCTCTCTGTAAACTACTACCGTCTTAGTGCTAGTGTTAGGGGGTACATGTGTCATTTTCTTGCTGATGAAAGTTATTGGGTCTCTGTCATTGTCTTTTATGTAACAAAGATTCTGTAGCCCTGTAAGTGGTGGGGTAGGGGTTGGGGTAGGGGTAGGGGGGTAGGGTAGGGGAAGGCCCAAGTTTCTTAAAAGCCTGATAGAAACAGGGCCCTTTTGGCTATCATCCATGATGTGTGTGTATTTTAATTAGTTTGTTTAGTATACTCCTCTCTTTGGAGTTGCTTTATCACATGAAGAAGTAATGGGTTTTGATTGTTGTAGATTGTGAGGAATATTGTTCGAAAGATAAGGTCTTATTATGTTCGTTAACCGACGCTCTAGAATGATTGCATAAAGTTTCTTATACAAACATGAACCGAGATAAAGGTCCACATATCAACATTATGGTCGATTGAGTCTAGGTCAAGTGGTACACTGGGAAGAAGAATAAACGAGTCTAGAATGATTATAAAAAGTTTCTTACAAGAACATGAATCGAGATAAGGTTGTGCAATAATTTGATTTGATTCTCCACTTCTAGTGGTATCTTAACTCTTTGAATTTTCCACTGATCAACATTATG

Coding sequence (CDS)

ATGAGTTTCGCTTATCACAGCTTATATTGGGAGGCCTCGTTGCTAAGATCTTATAACAGCATTGAAGCTGGTTGGCAGCGTCAGTCCGAATCTCTACGCGCGACAACAACACAGACTCTTCACATACTATACGACGCGAGCGATGCCATATCAAGCTACAGGCTGTTACAAACCTCCTCTGCTCGGGCTTTATTCAAAATCAACAGCGATATCGCAATGGAGCAAGCATTTCCCCTGCTCTCGGCGTTCGAAATTCGCAATACGAAACAGTATACTTGTCTGAAGTCGGGGTGTATGTCCCCTACCATGTCTCTTGATGAGACGCCACAACCGAGTATAACCGAGTCTCAGACCAAAAAAGGGGCATTGGTGGATGCAATTTGGCAATGGCTACGTAATGGGATATTGGCTTCATTCTATCTCATATTTAGCGACAGTGCCATCTCCATGATTGAGTGGGGAGGTGAGTGGTAA

Protein sequence

MSFAYHSLYWEASLLRSYNSIEAGWQRQSESLRATTTQTLHILYDASDAISSYRLLQTSSARALFKINSDIAMEQAFPLLSAFEIRNTKQYTCLKSGCMSPTMSLDETPQPSITESQTKKGALVDAIWQWLRNGILASFYLIFSDSAISMIEWGGEW
Homology
[Close]
BLAST of Carg26945 vs. NCBI nr
Match: KAG7022015.1 (hypothetical protein SDJN02_15744 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 313.9 bits (803), Expect = 7.7e-82
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0 

Query: 1   MSFAYHSLYWEASLLRSYNSIEAGWQRQSESLRATTTQTLHILYDASDAISSYRLLQTSS 60
           MSFAYHSLYWEASLLRSYNSIEAGWQRQSESLRATTTQTLHILYDASDAISSYRLLQTSS
Sbjct: 1   MSFAYHSLYWEASLLRSYNSIEAGWQRQSESLRATTTQTLHILYDASDAISSYRLLQTSS 60

Query: 61  ARALFKINSDIAMEQAFPLLSAFEIRNTKQYTCLKSGCMSPTMSLDETPQPSITESQTKK 120
           ARALFKINSDIAMEQAFPLLSAFEIRNTKQYTCLKSGCMSPTMSLDETPQPSITESQTKK
Sbjct: 61  ARALFKINSDIAMEQAFPLLSAFEIRNTKQYTCLKSGCMSPTMSLDETPQPSITESQTKK 120

Query: 121 GALVDAIWQWLRNGILASFYLIFSDSAISMIEWGGEW 158
           GALVDAIWQWLRNGILASFYLIFSDSAISMIEWGGEW
Sbjct: 121 GALVDAIWQWLRNGILASFYLIFSDSAISMIEWGGEW 157

The following BLAST results are available for this feature:
BLAST of Carg26945 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022015.17.7e-82100.00hypothetical protein SDJN02_15744 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg26945 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26945 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26945 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26945-RACarg26945-RAmRNA