Carg26896 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26896
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Late embryogenesis abundant protein family protein
Location	Carg_Chr05: 5522532 .. 5523193 (+)
RNA-Seq Expression	Carg26896
Synteny	Carg26896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTGGGGCAGCAGCCATTGCAAGGAGATCACCCACTTCCAACACTTCCCTCCTTTTCGCTTCCAACCCCAAATTTATTCACGTAAGTACGTCGTCCTTCCACCAAATTTGTTCCTTAAAGAAGTCAGAGATTCGAATCTCATATTTCAGATGATGATGTGATGTTTTTGTGCGTCTTTTGACAGACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCGGAGGCAAATGAAGGAATGACGCCTGGTGAACATATGATGCAGGACAAGGCTTACTCTACTGCAGAACATGTGATCAAACTTCCAACTTTTTATTTTATTTTATTTTATTTTTTAAATTAATTGAATCGAAGCTACGAACGAGAGCGATGTTGAAGATAGATAAGATGGGGTAAATTTGGAAATGCAGGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTGAGTGCAAGAGCGCAAGAGGTATCAGCAAAGGCAAAGCAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACACAGTGGTTGAGACTACCAGAGACTCCAAGCAATTTGTCAAAGCCAATGCAAAGACTGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAATTTCCCCTTCTTTCTTTCTTTTTTTTTTTT

mRNA sequence

CATTTTGGGGCAGCAGCCATTGCAAGGAGATCACCCACTTCCAACACTTCCCTCCTTTTCGCTTCCAACCCCAAATTTATTCACGTAAACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCGGAGGCAAATGAAGGAATGACGCCTGGTGAACATATGATGCAGGACAAGGCTTACTCTACTGCAGAACATGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTGAGTGCAAGAGCGCAAGAGGTATCAGCAAAGGCAAAGCAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACACAGTGGTTGAGACTACCAGAGACTCCAAGCAATTTGTCAAAGCCAATGCAAAGACTGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAATTTCCCCTTCTTTCTTTCTTTTTTTTTTTT

Coding sequence (CDS)

ATGACGCCTGGTGAACATATGATGCAGGACAAGGCTTACTCTACTGCAGAACATGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTGAGTGCAAGAGCGCAAGAGGTATCAGCAAAGGCAAAGCAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACACAGTGGTTGAGACTACCAGAGACTCCAAGCAATTTGTCAAAGCCAATGCAAAGACTGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAA

Protein sequence

MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVVETTRDSKQFVKANAKTVEKCMNTKNRS

Homology

[Close]

BLAST of Carg26896 vs. NCBI nr
Match: KAG7029929.1 (hypothetical protein SDJN02_08272 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.0 bits (406), Expect = 4.6e-36
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV 60
          MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV
Sbjct: 1  MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV 60

Query: 61 ETTRDSKQFVKANAKTVEKCMNTKNRS 88
          ETTRDSKQFVKANAKTVEKCMNTKNRS
Sbjct: 61 ETTRDSKQFVKANAKTVEKCMNTKNRS 87

[Close]

BLAST of Carg26896 vs. NCBI nr
Match: XP_022933143.1 (uncharacterized protein At4g13230 [Cucurbita moschata])

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-35
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV 60
           MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK+AMEAAKDSAHRAKDTVV
Sbjct: 64  MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAHRAKDTVV 123

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNRS 88
           ETT+DSKQFVKANAKTVEKCMNTKNRS
Sbjct: 124 ETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of Carg26896 vs. NCBI nr
Match: KAG6598970.1 (hypothetical protein SDJN03_08748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-35
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV 60
           MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK+AMEAAKDSAHRAKDTVV
Sbjct: 64  MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAHRAKDTVV 123

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNRS 88
           ETT+DSKQFVKANAKTVEKCMNTKNRS
Sbjct: 124 ETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of Carg26896 vs. NCBI nr
Match: XP_023546410.1 (uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-35
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV 60
           MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK+AMEAAKDSAHRAKDTVV
Sbjct: 64  MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAHRAKDTVV 123

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNRS 88
           ETT+DSKQFVKANAKTVEKCMNTKNRS
Sbjct: 124 ETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of Carg26896 vs. NCBI nr
Match: XP_022973925.1 (uncharacterized protein At4g13230 [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 2.2e-33
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV 60
           MT GE MMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD+VV
Sbjct: 64  MTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDSVV 123

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNRS 88
           ETT+DSKQFVKANAKTVEKCMNTKNRS
Sbjct: 124 ETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of Carg26896 vs. ExPASy Swiss-Prot
Match: Q8LFD5 (Uncharacterized protein At4g13230 OS=Arabidopsis thaliana OX=3702 GN=At4g13230 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.8e-05
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 10  DKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAA----KDSAHRAKDTVVETTRD 69
           DKA    + V++K  + A  +S  A  +  KAK   E A    KD+  + KDTV   T +
Sbjct: 39  DKATEAQQKVAKKADEGAQTISDAAGNLKDKAKNTAEEAWDKVKDTTEKIKDTVTGKTEE 98

Query: 70  SKQFVKANAKTVEKCMNTKN 86
           +K+ +KA AKTVE+ MNTKN
Sbjct: 99  TKESIKATAKTVERSMNTKN 118

[Close]

BLAST of Carg26896 vs. ExPASy TrEMBL
Match: A0A6J1F3W7 (uncharacterized protein At4g13230 OS=Cucurbita moschata OX=3662 GN=LOC111439943 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV 60
           MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK+AMEAAKDSAHRAKDTVV
Sbjct: 64  MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAHRAKDTVV 123

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNRS 88
           ETT+DSKQFVKANAKTVEKCMNTKNRS
Sbjct: 124 ETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of Carg26896 vs. ExPASy TrEMBL
Match: A0A6J1ICL4 (uncharacterized protein At4g13230 OS=Cucurbita maxima OX=3661 GN=LOC111472556 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV 60
           MT GE MMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD+VV
Sbjct: 64  MTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDSVV 123

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNRS 88
           ETT+DSKQFVKANAKTVEKCMNTKNRS
Sbjct: 124 ETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of Carg26896 vs. ExPASy TrEMBL
Match: A0A6J1CSM2 (uncharacterized protein At4g13230-like OS=Momordica charantia OX=3673 GN=LOC111014202 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-17
Identity = 57/86 (66.28%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVV 60
           M PGE MM + AYSTA+HV EK  DM GM+ +   E+S KAKQ MEAA DSA RAKDTVV
Sbjct: 68  MMPGESMMTE-AYSTAQHVREKASDMGGMVXS---EISEKAKQTMEAAWDSAQRAKDTVV 127

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNR 87
           E T++SK+FVKANA++V+K MNTKNR
Sbjct: 128 EATKESKEFVKANAESVKKSMNTKNR 149

[Close]

BLAST of Carg26896 vs. ExPASy TrEMBL
Match: A0A2N9J2L7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58716 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.3e-12
Identity = 48/82 (58.54%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 8   MQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQ-AMEA---AKDSAHRAKDTVVETT 67
           +++KA+STAEHV++KT+DMAGM+SA AQ+V+ KAKQ A EA   AKD+A +AKDTV+   
Sbjct: 69  VKNKAFSTAEHVTQKTKDMAGMMSATAQDVTEKAKQTAQEAWGTAKDTAQKAKDTVLGKA 128

Query: 68  RDSKQFVKANAKTVEKCMNTKN 86
            +SK+ +K NA+TV++ MNTKN
Sbjct: 129 EESKECIKENAETVKESMNTKN 150

[Close]

BLAST of Carg26896 vs. ExPASy TrEMBL
Match: A0A5N6QS64 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_006291 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.3e-11
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 8   MQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQ----AMEAAKDSAHRAKDTVVETT 67
           ++DKA+STAEHV++KT+DMAG +SA AQ+ + KAKQ    A + AKD+A +AKDTV+   
Sbjct: 61  VKDKAFSTAEHVTQKTKDMAGNVSATAQDATEKAKQTAQDAWDTAKDTAQKAKDTVMGKA 120

Query: 68  RDSKQFVKANAKTVEKCMNTKN 86
             SK  +K NA+TV++ MNTKN
Sbjct: 121 EQSKGNIKENAETVKESMNTKN 142

[Close]

BLAST of Carg26896 vs. TAIR 10
Match: AT4G13230.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 47.4 bits (111), Expect = 6.9e-06
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 10  DKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAA----KDSAHRAKDTVVETTRD 69
           DKA    + V++K  + A  +S  A  +  KAK   E A    KD+  + KDTV   T +
Sbjct: 39  DKATEAQQKVAKKADEGAQTISDAAGNLKDKAKNTAEEAWDKVKDTTEKIKDTVTGKTEE 98

Query: 70  SKQFVKANAKTVEKCMNTKN 86
           +K+ +KA AKTVE+ MNTKN
Sbjct: 99  TKESIKATAKTVERSMNTKN 118

The following BLAST results are available for this feature:

BLAST of Carg26896 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029929.1	4.6e-36	100.00	hypothetical protein SDJN02_08272 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022933143.1	2.3e-35	97.70	uncharacterized protein At4g13230 [Cucurbita moschata]	[more]
KAG6598970.1	2.3e-35	97.70	hypothetical protein SDJN03_08748, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023546410.1	2.3e-35	97.70	uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo]	[more]
XP_022973925.1	2.2e-33	95.40	uncharacterized protein At4g13230 [Cucurbita maxima]	[more]

BLAST of Carg26896 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFD5	9.8e-05	41.25	Uncharacterized protein At4g13230 OS=Arabidopsis thaliana OX=3702 GN=At4g13230 P...	[more]

BLAST of Carg26896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3W7	1.1e-35	97.70	uncharacterized protein At4g13230 OS=Cucurbita moschata OX=3662 GN=LOC111439943 ...	[more]
A0A6J1ICL4	1.0e-33	95.40	uncharacterized protein At4g13230 OS=Cucurbita maxima OX=3661 GN=LOC111472556 PE...	[more]
A0A6J1CSM2	6.8e-17	66.28	uncharacterized protein At4g13230-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A2N9J2L7	2.3e-12	58.54	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58716 PE=4 SV=1	[more]
A0A5N6QS64	4.3e-11	54.88	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_006291 PE=4 SV=1	[more]

BLAST of Carg26896 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13230.1	6.9e-06	41.25	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..60
None	No IPR available	PANTHER	PTHR47372	DAUER UP-REGULATED-RELATED	coord: 7..85
None	No IPR available	PANTHER	PTHR47372:SF21	LATE EMBRYOGENESIS ABUNDANT PROTEIN, GROUP 3-LIKE	coord: 7..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26896-RA	Carg26896-RA	mRNA