Carg26889 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26889
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphospholipase A(1) LCAT3
LocationCarg_Chr05: 5430403 .. 5432545 (-)
RNA-Seq ExpressionCarg26889
SyntenyCarg26889
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACAAAAACTTTACCAAAAGGGCCTCAAAGTGTTTTTTTTTAATTGTTTTCTTTACTTTTCTTTTTCTGTTCTTGAGTGTGTACTAGAGGCCAGAATTGCTAATGCTTAATATGAATTTCTTGCGAGACATAGGCTTCCTTCAGTTACTGACTTCCACCTTTTATTGTCGATTTCATTCAATGATTCAAGTTGATTGTTGTCCCGGCTGTAAGAGTGATTAAGCAACTCCTCCTGCTATGTTTCTTCTTCATTACTATTATCATGCTTCCAAAATGACTCAACAATTGCATTATATCCGGTTCTTGGGATATTGATCTGAAGAATTTTACTAATTTGCTTGATCTGTTTTTATCCATCATACTATACCAGAGTTTTCTTTTTACTGTTACAGGTGGTAAAATGCCTCCATGTGGATGACGTTTATCACTTTCATAATATAATTGATATGCTTGTTGGATGCGGCTACAAGAAGGGAACGACATTGTTTGGTTTTGGTTATGATTTCCGGCAGAGTAATAGGTAGATCATTCTTCATCTCTTGTTTTAGTATCAAAATTTCATGAATGATTTAATTGCTAGTAGCCGAAAGTGTATGCATGAATCAACATTGATGTAGGAGCATTGGTTGTTGGTGACAGAATTGGCAAGGCTATGGATGGTCTTAAAGCGAAGCTGGAAACTGCTAGTAAAGCTTCTGGTGGTAGAAAAGTGAACATAATATCTCATTCTATGGGTGGGCTGCTACTTTCGTGTTTCATGTCACTCCATAATGATGTACGCACGTATTCTCTTGACTAGTTGAAACTTGCATCTATGAGCACGAACTTGTTTTATGGATTCGGCATGATGTGCTTATTGTTAATTGGCAGATTTTTTCCAAATACGTAAATAAGTGGATTGCTATAGCTTGCCCTTTCCAAGGTAATTCAAACCTATTGCTTATTTCCATTCGTCAATAGCTGTAATCTGAATCTAGTCCAATCATTGAAACTGTTCCTTATGTGAACAAATTCCTTTGATCAAGTTGTCCTTCTAACTTAGTTTCTCATTATTATTTATTTGATAGTAAACATTAGGAAAAATTGAATGTATGACCGATCTAACACAAAATAATAGCAAATATAGCACAAGCTCAAAATATTTGCCAATATGACACAACTGTAAGCCATATCAGTCTGGACTGAGGTCTATCACTGATAAACCTATCACTGACTGATATCGATCTATGATTGAGGTCTATCACTGATAAACCTCTCAATGATTGAGGTATGTCAATGATTGTTTGCATGCTTGTTTGCTATTACGTTATTACTAATATATTACTATCATAGAATATAAATGTAGTGGCTTCTTCTTGTCGCACTCTATATCTTTGTTTTTGTTCGTTTTGTCTTTTTCTTTCAATATCCTTTAGGCTAGTGAATATTGTGTTCCATGGAGGTGATGAGCTTCTGCATCCATAACATTAACTTTTGTATTTGGCTTGAAATCGACATGAGTTTGTTGAAGACATGAAGTACAAGTTGAAGATTCCCTTCTGTCTTTCATCTGTTTTGGATAATTCTCTAATTGATCCATTGCAAAATCCTGTACACTTATTTTTTCTTTGTAAGCAAGTCAAAGATGTTTCTGAGACTATCCGTTTGGCCAAGTATAGGATTCCCCAAGAAAGAAAATTCAAGTATCAGTTGGAAATTCGAATGTATAGTTCTTTGGGAAATGATTAGAGATTTTCTCTTAAAGATTGAGAAAAAGCACTCATCTTTCACTTTTCCGAATCATGTCAGGGAAAAATATTGTAGTCGGAGCTAGTTAAAGATAATCAACTTCATAAAAGAAAAATAAAATGCTTGTACATTTTGAGTGAGGAAAGAAAAAGAAGTGGAAATGAACTTCAATTTTGTCTCGGTGGTTTCTAGATTGCTAGCTCACAATTCTTGGAAGGACATTCATGATTGGTACATGATCATTAGAAGCATACAATCCTTGCTCAACCATTTCTTCCATCTAAATCCTTTTAGGGTGGACAAGGCGTTCCTCTGTTGCACGAAAAAAGTGGCAAGCTCTCGGTTGTAAATAGAACCATGGTAGATGAGGAACACTTGAACAACCTAGTGGTTCCTTCATATGGAGGATGA

mRNA sequence

ATGAAACAAAAACTTTACCAAAAGGGCCTCAAAGTGGTAAAATGCCTCCATGTGGATGACGTTTATCACTTTCATAATATAATTGATATGCTTGTTGGATGCGGCTACAAGAAGGGAACGACATTGTTTGGTTTTGGTTATGATTTCCGGCAGAGAGCATTGGTTGTTGGTGACAGAATTGGCAAGGCTATGGATGGTCTTAAAGCGAAGCTGGAAACTGCTAGTAAAGCTTCTGGTGGTAGAAAAGGTGGACAAGGCGTTCCTCTGTTGCACGAAAAAAGTGGCAAGCTCTCGGTTGTAAATAGAACCATGGTAGATGAGGAACACTTGAACAACCTAGTGGTTCCTTCATATGGAGGATGA

Coding sequence (CDS)

ATGAAACAAAAACTTTACCAAAAGGGCCTCAAAGTGGTAAAATGCCTCCATGTGGATGACGTTTATCACTTTCATAATATAATTGATATGCTTGTTGGATGCGGCTACAAGAAGGGAACGACATTGTTTGGTTTTGGTTATGATTTCCGGCAGAGAGCATTGGTTGTTGGTGACAGAATTGGCAAGGCTATGGATGGTCTTAAAGCGAAGCTGGAAACTGCTAGTAAAGCTTCTGGTGGTAGAAAAGGTGGACAAGGCGTTCCTCTGTTGCACGAAAAAAGTGGCAAGCTCTCGGTTGTAAATAGAACCATGGTAGATGAGGAACACTTGAACAACCTAGTGGTTCCTTCATATGGAGGATGA

Protein sequence

MKQKLYQKGLKVVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKLETASKASGGRKGGQGVPLLHEKSGKLSVVNRTMVDEEHLNNLVVPSYGG
Homology
BLAST of Carg26889 vs. NCBI nr
Match: KAG7029922.1 (Phospholipase A(1) LCAT3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   MKQKLYQKGLKVVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRI 60
           MKQKLYQKGLKVVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRI
Sbjct: 1   MKQKLYQKGLKVVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRI 60

Query: 61  GKAMDGLKAKLETASKASGGRKGGQGVPLLHEKSGKLSVVNRTMVDEEHLNNLVVPSYGG 120
           GKAMDGLKAKLETASKASGGRKGGQGVPLLHEKSGKLSVVNRTMVDEEHLNNLVVPSYGG
Sbjct: 61  GKAMDGLKAKLETASKASGGRKGGQGVPLLHEKSGKLSVVNRTMVDEEHLNNLVVPSYGG 120

BLAST of Carg26889 vs. NCBI nr
Match: XP_022973913.1 (phospholipase A(1) LCAT3 [Cucurbita maxima])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 12  VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKL 71
           VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ      +RIGKAMDGLKAKL
Sbjct: 112 VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ-----SNRIGKAMDGLKAKL 171

Query: 72  ETASKASGGRK 83
           ETASKASGGRK
Sbjct: 172 ETASKASGGRK 177

BLAST of Carg26889 vs. NCBI nr
Match: XP_023546771.1 (phospholipase A(1) LCAT3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 12  VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKL 71
           VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ      +RIGKAMDGLKAKL
Sbjct: 114 VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ-----SNRIGKAMDGLKAKL 173

Query: 72  ETASKASGGRK 83
           ETASKASGGRK
Sbjct: 174 ETASKASGGRK 179

BLAST of Carg26889 vs. NCBI nr
Match: XP_022933151.1 (phospholipase A(1) LCAT3 [Cucurbita moschata])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 12  VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKL 71
           VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ      +RIGKAMDGLKAKL
Sbjct: 115 VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ-----SNRIGKAMDGLKAKL 174

Query: 72  ETASKASGGRK 83
           ETASKASGGRK
Sbjct: 175 ETASKASGGRK 180

BLAST of Carg26889 vs. NCBI nr
Match: KAG6598962.1 (Phospholipase A(1) LCAT3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 12  VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKL 71
           VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ      +RIGKAMDGLKAKL
Sbjct: 114 VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ-----SNRIGKAMDGLKAKL 173

Query: 72  ETASKASGGRK 83
           ETASKASGGRK
Sbjct: 174 ETASKASGGRK 179

BLAST of Carg26889 vs. ExPASy Swiss-Prot
Match: Q93V61 (Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana OX=3702 GN=LCAT3 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-18
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 0

Query: 13  VKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKLE 72
           VK  H+ +VYHFH++I+MLVGCGYKKGTTLFG+GYDFRQ      +RI   + GLK KLE
Sbjct: 106 VKLCHLTEVYHFHDMIEMLVGCGYKKGTTLFGYGYDFRQ-----SNRIDLLILGLKKKLE 165

Query: 73  TASKASGGRKGGQGVPLLHEKSGKLSV 100
           TA K SGGRK    V ++    G L V
Sbjct: 166 TAYKRSGGRK----VTIISHSMGGLMV 183

BLAST of Carg26889 vs. ExPASy Swiss-Prot
Match: Q71N54 (Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana OX=3702 GN=LCAT4 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 19  DDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKLETASKAS 78
           + VY+FH +I  ++G G+++G TLFGFGYDFRQ      +R+ + +D    KLET  KAS
Sbjct: 117 ESVYYFHEMIVEMIGWGFEEGKTLFGFGYDFRQ-----SNRLQETLDQFAKKLETVYKAS 175

Query: 79  GGRK 83
           G +K
Sbjct: 177 GEKK 175

BLAST of Carg26889 vs. ExPASy TrEMBL
Match: A0A6J1IEK6 (phospholipase A(1) LCAT3 OS=Cucurbita maxima OX=3661 GN=LOC111472543 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.6e-27
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 12  VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKL 71
           VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ      +RIGKAMDGLKAKL
Sbjct: 112 VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ-----SNRIGKAMDGLKAKL 171

Query: 72  ETASKASGGRK 83
           ETASKASGGRK
Sbjct: 172 ETASKASGGRK 177

BLAST of Carg26889 vs. ExPASy TrEMBL
Match: A0A6J1EYB8 (phospholipase A(1) LCAT3 OS=Cucurbita moschata OX=3662 GN=LOC111439951 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.6e-27
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 12  VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKL 71
           VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ      +RIGKAMDGLKAKL
Sbjct: 115 VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQ-----SNRIGKAMDGLKAKL 174

Query: 72  ETASKASGGRK 83
           ETASKASGGRK
Sbjct: 175 ETASKASGGRK 180

BLAST of Carg26889 vs. ExPASy TrEMBL
Match: A0A0A0LHR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093800 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 12  VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKL 71
           +VKCLHVDDVYHFH++IDMLVGCGYKKGTTLFGFGYDFRQ      +RIGKAMDGLKAKL
Sbjct: 107 MVKCLHVDDVYHFHDMIDMLVGCGYKKGTTLFGFGYDFRQ-----SNRIGKAMDGLKAKL 166

Query: 72  ETASKASGGRK 83
           ETASKASGGRK
Sbjct: 167 ETASKASGGRK 172

BLAST of Carg26889 vs. ExPASy TrEMBL
Match: A0A5A7U650 (Phospholipase A(1) LCAT3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00130 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 12  VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKL 71
           +VKCLHVDDVYHFH++IDMLV CGYKKGTTLFGFGYDFRQ      +RIGKAMDGLKAKL
Sbjct: 36  MVKCLHVDDVYHFHDMIDMLVECGYKKGTTLFGFGYDFRQ-----SNRIGKAMDGLKAKL 95

Query: 72  ETASKASGGRK 83
           ETASKASGGRK
Sbjct: 96  ETASKASGGRK 101

BLAST of Carg26889 vs. ExPASy TrEMBL
Match: A0A1S3B3Q4 (phospholipase A(1) LCAT3 OS=Cucumis melo OX=3656 GN=LOC103485824 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 12  VVKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKL 71
           +VKCLHVDDVYHFH++IDMLV CGYKKGTTLFGFGYDFRQ      +RIGKAMDGLKAKL
Sbjct: 108 MVKCLHVDDVYHFHDMIDMLVECGYKKGTTLFGFGYDFRQ-----SNRIGKAMDGLKAKL 167

Query: 72  ETASKASGGRK 83
           ETASKASGGRK
Sbjct: 168 ETASKASGGRK 173

BLAST of Carg26889 vs. TAIR 10
Match: AT3G03310.1 (lecithin:cholesterol acyltransferase 3 )

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-19
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 0

Query: 13  VKCLHVDDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKLE 72
           VK  H+ +VYHFH++I+MLVGCGYKKGTTLFG+GYDFRQ      +RI   + GLK KLE
Sbjct: 106 VKLCHLTEVYHFHDMIEMLVGCGYKKGTTLFGYGYDFRQ-----SNRIDLLILGLKKKLE 165

Query: 73  TASKASGGRKGGQGVPLLHEKSGKLSV 100
           TA K SGGRK    V ++    G L V
Sbjct: 166 TAYKRSGGRK----VTIISHSMGGLMV 183

BLAST of Carg26889 vs. TAIR 10
Match: AT4G19860.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-10
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 19  DDVYHFHNIIDMLVGCGYKKGTTLFGFGYDFRQRALVVGDRIGKAMDGLKAKLETASKAS 78
           + VY+FH +I  ++G G+++G TLFGFGYDFRQ      +R+ + +D    KLET  KAS
Sbjct: 117 ESVYYFHEMIVEMIGWGFEEGKTLFGFGYDFRQ-----SNRLQETLDQFAKKLETVYKAS 175

Query: 79  GGRK 83
           G +K
Sbjct: 177 GEKK 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7029922.11.2e-61100.00Phospholipase A(1) LCAT3, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022973913.11.6e-2690.14phospholipase A(1) LCAT3 [Cucurbita maxima][more]
XP_023546771.11.6e-2690.14phospholipase A(1) LCAT3 [Cucurbita pepo subsp. pepo][more]
XP_022933151.11.6e-2690.14phospholipase A(1) LCAT3 [Cucurbita moschata][more]
KAG6598962.11.6e-2690.14Phospholipase A(1) LCAT3, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Q93V612.1e-1857.47Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana OX=3702 GN=LCAT3 PE=1 SV=1[more]
Q71N543.1e-0946.88Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Match NameE-valueIdentityDescription
A0A6J1IEK67.6e-2790.14phospholipase A(1) LCAT3 OS=Cucurbita maxima OX=3661 GN=LOC111472543 PE=4 SV=1[more]
A0A6J1EYB87.6e-2790.14phospholipase A(1) LCAT3 OS=Cucurbita moschata OX=3662 GN=LOC111439951 PE=4 SV=1[more]
A0A0A0LHR51.4e-2585.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093800 PE=4 SV=1[more]
A0A5A7U6501.2e-2484.51Phospholipase A(1) LCAT3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3B3Q41.2e-2484.51phospholipase A(1) LCAT3 OS=Cucumis melo OX=3656 GN=LOC103485824 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G03310.11.5e-1957.47lecithin:cholesterol acyltransferase 3 [more]
AT4G19860.12.2e-1046.88alpha/beta-Hydrolases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029058Alpha/Beta hydrolase foldGENE3D3.40.50.1820alpha/beta hydrolasecoord: 6..83
e-value: 8.8E-10
score: 40.3
IPR003386Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferasePFAMPF02450LCATcoord: 9..80
e-value: 1.9E-4
score: 20.7
NoneNo IPR availablePANTHERPTHR11440LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATEDcoord: 12..82
NoneNo IPR availablePANTHERPTHR11440:SF53PHOSPHOLIPASE A(1) LCAT3coord: 12..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26889-RACarg26889-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008374 O-acyltransferase activity