Carg26838 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26838
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cleavage and polyadenylation specificity factor subunit 3-II
Location	Carg_Chr20: 4901369 .. 4913937 (+)
RNA-Seq Expression	Carg26838
Synteny	Carg26838

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACACGTCGCTCGCCGCTCGCAGAGCACTCGCCTGGTGGCTACCCTCCCTCTGCCTCTTCAATCTTCACTCGGCTCTTTTTCCCTTACGGTCGCTGTCGCCTCTCTTAGCTCAGTGCCGCAGTCGCCGTTTTTCTCCACTCGTACTGCTGACGTCTTTTTATGCGCTGGCCTCCTGGTCTCTCTTCGCTCGGGTGAGTCTGGCATTGTGTAGAAGTTTATCTGAGTTGAAGGACTACTGCAATGACCATCGATTGTCTCGTTCTTGGTAATCCCTTAGCTTTTTCTTATGTATTCTTTATCCAATTACGGTTTCCAACGTTGATTTTAGTCTTTATCGTCTTTTAGGCGCTGGGCAAGAAGTTGGGAAGAGTTGTGTGGTCGTCACAATCAATGGAAAGCGAATTATGTTTGATTGCGGCATGCATATGGGCTATCTCGATCATCGTCGATATCCTGATTTCTCTCGCATCTCTGCATCTCGCGATTACAATACTGTTCTTTCCTGTGTCATCATCACACATTTGTATGATTTTTTTCTTTTTTTGTTGTAGTAATCGATACATCTCTGTTACATTACATTACATTACAATTCTTTGTTTTTATTTGTCTTTTCTTTGCAATTTTGCAGTCACCTGGACCATATAGGTGCTCTTCCATACTTCACCGAAGTTTGTGGCTATAATGGACCCATTTACATGACGGTACATATCATCTAATACACATGCGCATAGATGTTTGTCCTTTTGGTTTCACCGTGGCCATGTTAGATTGTTTTTTGCATATAAAATGTTGTATGAAGTCACCCAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAAACACACGGATTATGGTTGGAGAATTCATGTGTAGCTTTCTTTCCTAGACCTAAATTCAGAGGTACAAAAAAACTTTGGAAGAAGAAGAGCTCACACAAAGTATGGTTGGAAAAATTTGAATCCATGTATAGCTTGCTTCCTTTGGCTTCGGTGCTGCCTTCTTTAGACCCTTCTTCTTTGCTTTCTTTAGGTTTCCAGCGTCCTCTCTCTGATAGAGTGGCGTTGGGAGTGGTAGGCCTTCTTTCTCTCTTTCAGGACGAGCATGTAATTCTAGGGAGTAGGGATGTTTGGATTTGGTCCCTTGATCCTTCTAAGGGCTTCACTTATCATTCTTTTTTCTCCTCTCTCTCTGAAAGGTTTATATTCCAAGGAAGGTTGAGTTGTTTGTGTGGCAGGTTTTACATGGGTGAGTTAATACCATGGATCGCATGCAAAGACTCTGTTCTTATGTTTTATTCTCGCAATTGTGTATTCTCGGTGGGCATGAAGTAGACCTGGATCATTTTTCTTGGAATTTCCAATGTTCTGACCACCTTTGGAGCATTGGTCGAGTGCGATTGCTGTTTGTCTCAGGTGGAGGAGGTGCTTTTGAGTTCTACTTTTAGGGAGAAGGGTAAAGTTTTTTTGACATGCTAGCTTCTTTGCTAGTTTTGAGTCTTTTGGATTGGGGGGAACAATGGAACTTTAAGAGAGGTGGAGAGGTCGGGTGAGGGTGTTTGGGAGGTGTCTAGGTTTAATGCATCATTGTGGGCGTCAGTCACTAGATCTTTTTGTAATTATGAGCTTGACATTGTTTTTTTTTGGCTTTTTGGAATTATGAGCTTGGTATTGTTTTTTTAGATTGATGTAATTTTCTATAGTTACCCTTTTTTGTGTGCCCTTGTATGTTCTTTCATCTCTCTAGGAAAGCGTGATTTGTTACCAAAAAAAAAAAAACTTTAAGACTCTTTAGTCCTATAATGAAGTTTATTGTCAATTTTGTTTTCTTACACGTTGATATGGGCATTGAAGCTCTCTTTACTTACCTTTGGCCACAGTATCCAACATTGGCATTGGCTCCTTTAATGTTGGAGGACTACCGGAAAGTGATGGTTGACCGAAGGGGTGAAGCAGAGCAATTTAGTAATGATCATATTATGGAGTGCATGAAAAAAGGTAACTGAATTATGTCAAGTTCATAAGTAGTATGCAACTAGTCTCTCTTGGTTGGAAATGTGATTGTTTAGGTGACCAAAGTATAAGCATTATCTCTATTTTTTAAAACGGATGAAGCATCAAAGTGCTGTGATCCATTAGGAGGATGTTACACACGTCCATGTTGCTTATCTCTCATACAATGTAGATATTACAACTATGTTGTGATAATTACTTTGTTTCCTTCCTTTTCCCATCCAATTTTGTGGGGTTCTAGGTGAACCTTCCCTTTTTTAACCCAGTGCCTTCACCAATGCCTTAGATACTATGTTCTCACAACTTTTTCCATCAATGATATTGTTACACACGTCATTACGTTGTATAGTTAGCTCTCTTTAGGGGTATGATTTATGTTCTTGGTTTACTTGACCGTGCTTTGTACCTTTTGTCTGATTCCAAATACTTTTGGATTTGGACATCTTGTGTACCTCTTATTTTTCATTTATCTCTATATTAAATGAAACTTGTTCCTTTTTTTTTTGCTTGTTTTCGTTCTACCTTACAAACACAGTGTAGAAGGAGAAACCTTTGACTGAATATGGAAAACTGCTATTTTATGAGATCCTTACCCTTCGTGTTTAACTAATTGTTCATCATTTGTGTTTGTACCCTTTTGCTTCATTTGATGATTGTTCTTGCTCAGATTGCGTTTTAGACTGCACTATTGATAGTTGTGTATGGCTTAACAATTAAGCTTCTGTGGGTACCTCTTATTTTTTTATTCATGTATTTGATGTACATCAATTGCTGTTCCATTATTTTCTTCAGTATATTAAGATTATCTGTCATTGATCTTGATTCACCTGCAGTTATACCTGTGGATTTGAAGCAGACTATACAGGTTGATGAAGATCTTCAAATTCGTGCTTACTATGCTGGACATGTAAGGCCTCGTTGATATATTTAGTATTCTTATTTTGCATCTCCTAGTATAGCTTTATTTAAAGCTGGCTGACAATCTTCCTCATCGGTGGTAGACATGTCCTATGTATTGTTGCTTAATTTCATCCTTGTTTCATTATTCAACTTGACTTTCATAACGTTATTAAGCTTCTCTCTCTCACTCTTTGTGTTTACGCAACAATATGTGCACTTATGTAAATGCTATAACAGTAATGATAGCAACCTTTATATTAAATTAGGTTGTTGGGGATTTTGTAACCTCCCTAGTCCTCTGGCCTTTAAACTGCATACACTGATTGGTTTTAATTCATCTCCTCCATATTAAAAGAAAGAAAGAAAGAAAGAATTGCAATGCACGAGCCTTGAAATTCTCCTGTATTTTCAATTTGAAACTTTTCGATGATGATATTATTTTTATTTTTCTCTGCTAATTTCCTCTTTTTTTGGTTTATTGTTTCCCCTCTAGTTTTTTTTTTTAAATACTTTTTCAGTCGGTAGGCAGATCTGGAAACTCAATGAACTCTTCCAAATAGAAAAAATTACATAATTCTGAAGTCTGTGCATTCTCTGGAATTCTATTTAGTTTCCTTAGAATATTTTTGTAGGTGAACGTGAATGCGCATGTTGGACATAGGGTATTCATTTCACAAAAAGTTAATAGACGTAAATGAGAGGGGTAACTTTGCTAAGGATGTATAGTAGTTTGAGTTTGACATATTGATATACCTAATTCTATCTGATGTGTCAAACTAATGGTAGTTTGAACGAAAAATTGTAACTTATTACTTGTATGTGCTTTTTAAATGGAATTTCTTTTGTATCGTATATGGGCATGCATGAATCCAGTAATTAGTTGCTTGCTGTGTGTATGCATCTATTTATCAATCTACTATTTTGCAAATTGTGGAACCCCAAATTGTGTCGTACCTTTATTCCCAGTTTAAATATAATCCACAAGCAACTTATGCTTGAATTATCGCCCAGAGTTGTGAACTTAGTTCTTAATATTGCTACGTCATTGTGCCTACTGTTTGTGCTTACTTGACTTATTCTCAAAGCTTTTTCTTGTTGCTTCCACGAACTTTGTCCATCAAACAACTGTAATGTGGAATGTGCATATTTATATTTTAATCATGTTCTTAAGGTTTTAGGAGCTGCCATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACACCTTGGAGCAGCTCAAATTGATCGAATGCAGTTAGACCTTCTTATAACAGAGTAAGAAGTTCAAAGAACTATTTTACTTGTTATAGTGTTGGTTGTGCACCCTTTTAATCTTCAGCTATGAAAACAATTTCTTCCAACCCTTGATTTCTCTCTGTAAGGGGAAAGTTGTATCGTAACATTGAATCCATCATATTTGGCAATGGTTTCAATTTTTTGATCTTCTAAGCATAACTTAACTAGTTAAGATATTATATATCTATTTGGTTCGAATATCCACTCTCACGTTGTTGAACTCAGAAAATAGGGCAAAAGAACCTTTTGTACTTAAAAGAGAACATGGGTAATGATAATTTTAAATAATCCCTTAAGCACATAAAAAACAAGGAGTTAAATGACCCTTAAAGAAAGAAGCATATTGTAATAAAATCATACACCTATGATTTATTTGCATGCTGTACATGAAAAAGAATGACGCACATAATGAAGCAACATCAAATGGGTTGAGATTGGACTTAAAATAAATGGGTTTTTATACTCCCATTATGTTGGGTTGTAAATGTATATTAAACTCAACTGGTCCTGATGTAGTCCATATCTCAAGGGCTGAATTTTTTTATTTTATTTTATTTTATTTTACTTCTAGGCTTTTGTTTGTATTTTGTCAATGAATGGTTTAGTTAGTAGTTAATTGGGCATTAGTTTGACGGTTCACAGAGTATTTTGAAGAACTAGCCGTTGCTTGTAGATTGTTTGTTAGATTTATAGCTGTTGGGGCTTGACTTGTAGAACTAAATTCTAGTTCCTTTTTTTCTTAAGTTGTCAACAAAAAGATGAAGATTTTTTTTCTATTTGCTTATGGTCTTCTAGTTAAACATAGGAGAGTTTTCTGTTCCTGATGCCTTTTCATCCGTAATTCAGCATGTGTATTCACTGCAAAGTATTTCTATTTTTAATCTTCCAATGTTTGTCTTCCGCAGGTCTACATATGCAACAACAATCCGTGATTCCAAATACGGCCGTGAGAGAGAATTTCTTAAAGCTGTATGTATAAATTAATTTATTAAAATCATTAACCCAGATTTGCCTTTTCTGCACCTCTTTATATTTTTAATTATAAATCTGATATGTTTGTTTTTCATTCATTGTCATGCATACTGACCTAATAGTAATTCAGGAGCCAGGACATAATTAAAGTTTAGCGAAGTTGTTCATGTTCTAATACCAACTTGGCATATTGTTTGAATGAAATATTATCTGTCTCTCGTTTGAAGATTGCAAAATCTTCTATTCTGTTGTAGGTTTTATTTTGTGATGTTTCAGGACTGTAGGTTGGTTGATCCCTATACTGTGTTTATAGGTTATTACAACTTTTCAGATGATAATTTGTACAGGGTATTGCATGTGAGAATTGTAGCATCATAGTTTAGGACCCATGATATAAGATATAAACTGGTGATGAATGGCTATTGGGCATTGATTAGTGACCTAAACCCATCATAAACTCTTTAAGTTCCTTAATAGACACTGAATTATTTTATCTTAAAAAAGTTCATAACGTTTAGCCATGAAAATGATTTGAAACAAGATATTTTTCCCGGATGATTTGGTATAGGTTCATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGTACTTTGCTAAATATTGTGTAGCTTTAAATCTTTATCTGCAAGCTGCATCTTTCATGACTAATTCATGTTATGTAATACTGTTACAGTTATAAAATTTTCCATTATGAGCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGCATGAATCTAAAGATTCCAATCTACTTTTCAGCAGGTCTCCTTTGAATAATAAGTTCTCATTTCATCCTTATACTAGTAGATATGTATTAATACATCTTAGGCAACTCTTCAGCTTCCAGTTTCCTTTTCATGATTTCCAACTGCCTTGTAAGTCCATGATCTGCTTTGATAATCTTCTGCCCACAATTTGCTGATAAAGTTGAGATGCATGTTAGGCATTTATCGAGAACTGCAATTGCCGAGTTGCTATGAGTGATTATTGAGTGTTAGGGCGATTAGAGCATTTCGTGGTGGGCTAATCCTTCTATTTGTCTCACAATTAATGGTGAGCATGGGTGATGAATTTATGTAGTAATTGAACTAGATTCAAGCTTGAGATACACTTGGTTGGTGAGTCCAAGCCATCTTTCAATGAGCAATGTGTTTCAAATCTTTATAAGCATTAAGCACTAATCAACTTGTCTGGATTATTCGAGTTGGCGATCTTTTTTCTTCTATAGATGAGGCATGTGGTGAGAGGAAGACCAGGCTGAATCAGATTTCAGCATCATCTCATAGACCACCGTGAGAAAGAGTTGATAATGATAGCTACTAAATACGTTTCTTTAAAGTTGTTAGGAATTGCTTTGTTTCATATACAGTTCTTCTCACTCTGTTGTTTCCTATAAGTATTGCTTTTCTCGACTTTTATGTTCTTGTGTTCATTTTTCTGCTTTCAGGTTTGACTGTTCAAGCTAATATGTACTATAAAATGCTCATCAGTTGGACCAGCCAGAAGGTTAAGGAGACATACACGACAAGGAATGCTTTTGACTTTAAGAATGGTATGTCATTCACATGTTTCATGTTTTCAGGATTGGAATCAATTGATGAAACTGCCATAAAATAAATGTTATTATGTTGAGCATATTTGCTTACCCGGGAAGTGATGTGGGTACCCCTTTCAAAGTGGCCGCCTAGGTGGGGACATTTATCTGAGTATTGAGGCATCTTACCTGAACAATGAATAAAACGAGAGGACATTTAAATTGGAAGTAGAGATGTCCATAGGGCGGGGGTCTTGGCCCCCGTCCCCGCCTCCTATTTTATTTCCCATTCTCGCAAAATTTTTATTTATTTTTGCGGGCATTGGGACAGGGATTCCTTGAGGGGGGAAATTTTCCCCATTTTTTATATATATTGTTTTTAAAAATATCCATCTCAAAGAATTTTTTAATGGATAATTTTCATTTTCCAACATAATTTATATTAAAAAATGTAAAACATCATAATAAATCCAATAATATTTCTTAGGCAAGATAATAATATAATGTTTAGGCAAGATAATAATATAATGTTTAACATAATTTCAATATTACAACATAGTCTTTTACACTTTAATGAATAAATATATATATACAAAGTGAGATGGGGCGGGAATTTGGGCGAGGTCGGGGGTGGGGAATATAATTCCCATCTCTGGCCCCGTTTAACTAACAAGAAAACTTCTCTCCACTTCCTCTCCCACTTTCGGGTTAAATGAACCTCTCTAATGGGAAGAGATTGTTATGTCAAACTTACTTTTTCCATGACCCAAATCACTCATTTTAAAATAATTATATTTGACAATAATGTAGAGGTTATTTTGAAAAAATCCAAACTCACTCTTATGTGATTCTAGAAGTTGTAGATAGGAGGTGATTTTGGTGGGTGATTGACTAGGAATCAGTTACAGGTATAATGGCTTTAGAAATCTGAAGTGATTTATTATTAAATGCCTTTTATAACATCACTTATAATTAAATCATGGTAACACTTATTCTAAAGTCACTTTTAACCACATAGCATGTGTCATATTTTAACCACTGACAAACTTGCGTTACATTTTGCAGTTCAAAAGTTTCGACCGTTCTATGATTGATGCTCCTGGGCCTTGTGTTCTTTTTGCTACACCAGGGATGATTAGTGGTGGGTTTTCTCTTGAGGTTTTTAAGCGCTGGGCACCTTCTAAGTTGAATCTTATCACATTGCCCGGGTATTGACTATGGCTACTCTCTTTTGGCTATCGCTTTTGTGTTCATTATTCAAGTGTACTTTTGCAGGATGGTTCTTTGACAAACCATAAAGTTGTCCAACTTCTGTGACTGAGCTTTTTCTTTCACTTTTGAAGCTCTTTTCTTTTTTCTTTCTTTCTTTCTTTTTTCTTAAATAATTATTCCAATTTTTGCTTATGTTCATAGTTTGTGTTTGGTCATGTTATGGTCTTTACTACATCCAAGCATAATGTGATTTTGAAATTGCTATCTGAAAGCCATATTGCTTTATCCCATGTAGGTATTGCGTGGCCGGAACTATTGGGCACAAGTTAATGTCAGGAAAACCCACCAAAATTGATCTGGACAAGGACACTCAAATTGATGTGCAATGCCAGGCTAGTATCTATCAGCTTTACGTTGTTGTGTTTTCCTTTTTGAATATGATTTTTAGAATCATTAATCCTTAGTTTCACTAGGCCTGAATTACATCTCGATTTGGATTTTAATGTTTCTTAGAGGTTCACTACTCGGTAGCTTTGGTTGATAGCCTTTTTAGACTGTTGTTTACCTTAGGGGAAACTAGGAATATAAAACAAACTTATAATGCATGGTGCCATGTGTCGCAATCCGCGATGAGATTGTGCTTTGAGAAAGTCGTTGAGAACGATGACTAATTTAAGTGGTGAAGAATGTCACAACCATAATATGAAGAAAGTAGGTTGTGACTCTCATGTGCAAACAAGACAAGGTGGCGACACGGTAGGGGTGCCCGAGTAGCCATGGAGGGTCAAGACAAGACGAGTACCATGATGCGACCGAGGAGGACGGTGCATCATCTAACACACCACAAAGATGTGCATGAAAGATAAGCCAAGGCATAGGCAAGATAGAGACAACGATGTGACATGAGCATTAGAGATAGACTTGTTGAAGGGTTGGGCAAGGCGCCAGGCCTTAACCTTGAAAGTCAAGGTTTCGAAGGGAACTTGGACATGCGGTTATGGAGTCAAGTCTGTCCATATGAAATATGAAAGCTTGCCCAATTTGGTGTCAATCCACTCAACATCGTATGCCCGTTTGCCAAAATCATTTCTACACTCGCAAGATTGAAAATGCCTCAAAATATACTATAGGAGGAGATATGGTGTTAGCTCTCCACCACCTCTAAGCCATGTGGCTTAAGCGAGCTACCTTGTTGACATATACGTATGTCACAGTGAGAGCGATCATTGCAAGACTAGTGTCTCGGACGACTTCCTTTGAAATAGATTTTTTTCAAGGACAATGTTAGGCGGTACAAATGTGCCAACATTGTGTCCCAGCCCATGTGTCAGAGGTTGGTCAGATACCCGCTATTCGGTACAGAGTTTGTAAGTGATATAACATGGACACAGGAGGTTTAATGGAGGAAGGTCGAGTTAAGTGACTTGGCCTAGTGTAGAGGCAAATCAGTTGGGTCGTAGATGATTGAACATGCACGCGCAAGCGGCGTGCATGGTCGAACAAGCTTGGATTCCGCAACTTGGTGTTCGGTGGGTAAAGACAAACCTTGCCTAAGGTTTGATGAAGCCACAAAGCCACACAAAAAAATGAATATGGGGCTTGAGTCTTATCAAGGTTGGTCGTGAGCTTGTCAAGATCATGGCGCCGCATGGCTGAAAAAGTACGACCATGATAGTTGGTATCACAGCCACACTTTGTGTTTTTAATTGGACAAAATTGTCAGGAAGAACCTGAGGGTCGAATGAAGGCATCACAAGCGTGTCAAAAGTGTCATCGATGGAGCAATTGTGTTGTCATGGATCAGAAACAAGATGTGGGTTGAAGCCAAGACTCCCCTAAGTCACTAGTGTCGTGTGTTGACACCTCAGTAGGGGGGGTTCTGCCCGTCAAAAAGCTACTCAAAGCTCATTTGCCAAAGCTTGAGGTTCCAATCGGGCCGACAGATGAAAAAGAAGGTGTACCAAGTCGGTGCTTTCCAAAGAGTCACATGAAGAGGCAGCCGAGTTTGAGTGGGGAGGGCCCGAGAGAATGGGTTGCTTATCCAATGTGAGTGCTCCAAGAAGCAAGCACAAGTGAATTCTTTGAGTCATCCCCTCTGAGAGGCGGGTGATTTCACAATAGATGTCAAGACCAGCATTTGCTCGAGAAGGAGCACTAGGCTGGATATGAAGGCAACAGAAGAATGAAGTTGTGGGAAGACCGAGAGAAGCGAAAGTGGCCAAGAAAGGAGTTGGCTAAAGTGTAGTGCCAACAACTTAAAGGATTGTGTCAAAAAGCATTGACTTTGCCTCAATGAGGGATGTGGTCAGGACGAGAAAATATTGTGGTTGGGCTTGCAAGCCCCACCCTGAGGGGTGCACCAATTTATGTGACTCAGAGAAACGCAAGTTGAGGCAAAAGTGGCCATGATTGGGGCAAATGCCCTTTAGTGGATTGGTGAGTGTCCCTGGCGGAGTTCGAAGGTAAGGCATCGTAAGCCCAACTTCACCCATGCCATGGCAAAGAAAGCCCATATTTTGTCTGGTGAGTGTCCCTGACCAAGCCGAAGATAGATGTCATAAGAGCCAGCTATGCCAATATTGAATTGCAGTGTCTATGTTGCGAGTCTCGTGGCTAAGTCCTAGATGGGAGAAAAAAAGAATAGGTCTGAAAGTGGGGTAGCCCATAGATAGTGTGCACAAGATTTTCGTATTCGTTTTGAAGCACATTTATTTCCAGCAAGTCAGTTAGCAAGCAGTCTAGACCCCGCTACCCCGCTACCACAAAGAGATATTTAGTGAATTTGTACTCATTTGTACTCATTTGAAGCATGATCTGTTCTAGCGGGTCAAGTCAACAACCAGTCCAAAGTGGGGAGAGAATGTCACAATCCGCGATGGGATTGTGCCCCTAGAAAGTCATCAAAGACGATGACTAATTTAAGTGAGGGAGTGTCACGACCATACTAAGAAGAAAGTAGGTTGTGACCCTCACGTGCAAACAAGACAAGGTCGGGACACGATAATGGCGCCCGATTGGCCACGCGTGGGCCGAGACAAGATGAGTGCCATGATGCAACCGAGGAGGACGGTCCATCATCTAGCACACCATAAAGATGTGCATGAAAGATAAGTTGAGGCAACGATGTCAACATGAGCATCAGAGATAGGCTTGTTGAAGGGTTGGGTAGGACTTGGGCCTTAACCTTGAATGATCTTTGAAGGGAATTTTTACATGTAGTTCTGGAGTTGACTCCGTCTATGTGAAAGCTCACCAAAGTTGGTGTTAATCCAACGAACAGATGCTCCACGACATCATATGCTTGTTCGCCAAAACTATGTCTACACCAGCCAGATTGAAAATGTCTCAAAATGTACTACTGTAGGGGAAGATATGGTGTCGGCTTTCCAAACCCAGGTTCTTTGGATGCATCTTGTTTGGGCTTTCCTGTGGACAATTGCCTCTTTGATGAAAAGGGGAGCACTTCACTGTAAATCCAGAAACATTACTGGTACTTTGAGTTCAAAACGAAACATACGCAAATGGACACCGTTAAAGTTTACCTGGATGAACTTCTGTTTTCCTTTTATTGTGTATACATATATATATAAATTTTTAGTCCTGTAATCATTCTATTAAATGTTCCTGGCTATATATAACTATGTTTCATCCCAGATTCACCAACTGGCATTCAGCCCACATACTGATTCCAAAGGAATCATGGATCTTGTGAAGTTCCTTAGTCCCAAGCACGTGATACTTGTACATGGAGAGAAGCCTAAAATGGTTACTTTAAAGGAGAGGATTCATTCAGAACTGGGAATCCCATGTCATGATCCTGCAAATAACGAGACTGTATCCATTTCTTCAACTCTTTCTATCAAAGCAGAATCCTCAAGCATGTTTATTCAGAGTTGTTCAACTCCCAATTTCAAATTTTTGAAAAGAAACTTGAATGATAAGATTAATTCAAAAGAGTTAAGTTCGAAAGAAGGAGGAACTTCAAGCATGTTCTTCCGCAGACGCTCGAATCCCCATGTCAAGCATTTGAATAGAAATCTTGACGAAAAGTTTGATTCTAGTTTGAGTTGTGGTCCAGAGCTAGAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAACGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTACTTCTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAACTGTAGTCCTATATATTTTGGAAGCTTAGATGATACCCATGTCATGGATTGCATATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATTTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCGAAGGAAAGTTGCCCTTACCGAACTACAAACAGAATTGAAAATGAATCTGCTGCAGCATTCTATTGCTGTAGTTGGCTAGTCGCAGATGAAGTCCTCGCATGGCAAATCATTTCCATCTTGGAGAAGCATGATCTCAGTTCAACATGA

mRNA sequence

CAACACGTCGCTCGCCGCTCGCAGAGCACTCGCCTGGTGGCTACCCTCCCTCTGCCTCTTCAATCTTCACTCGGCTCTTTTTCCCTTACGGTCGCTGTCGCCTCTCTTAGCTCAGTGCCGCAGTCGCCGTTTTTCTCCACTCGTACTGCTGACGTCTTTTTATGCGCTGGCCTCCTGGTCTCTCTTCGCTCGGGTGAGTCTGGCATTGTGTAGAAGTTTATCTGAGTTGAAGGACTACTGCAATGACCATCGATTGTCTCGTTCTTGGCGCTGGGCAAGAAGTTGGGAAGAGTTGTGTGGTCGTCACAATCAATGGAAAGCGAATTATGTTTGATTGCGGCATGCATATGGGCTATCTCGATCATCGTCGATATCCTGATTTCTCTCGCATCTCTGCATCTCGCGATTACAATACTGTTCTTTCCTGTGTCATCATCACACATTTTCACCTGGACCATATAGGTGCTCTTCCATACTTCACCGAAGTTTGTGGCTATAATGGACCCATTTACATGACGTATCCAACATTGGCATTGGCTCCTTTAATGTTGGAGGACTACCGGAAAGTGATGGTTGACCGAAGGGGTGAAGCAGAGCAATTTAGTAATGATCATATTATGGAGTGCATGAAAAAAGTTATACCTGTGGATTTGAAGCAGACTATACAGGTTGATGAAGATCTTCAAATTCGTGCTTACTATGCTGGACATGTTTTAGGAGCTGCCATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACACCTTGGAGCAGCTCAAATTGATCGAATGCAGTTAGACCTTCTTATAACAGAGTCTACATATGCAACAACAATCCGTGATTCCAAATACGGCCGTGAGAGAGAATTTCTTAAAGCTGTTCATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGCATGAATCTAAAGATTCCAATCTACTTTTCAGCAGGTTTGACTGTTCAAGCTAATATGTACTATAAAATGCTCATCAGTTGGACCAGCCAGAAGTTCAAAAGTTTCGACCGTTCTATGATTGATGCTCCTGGGCCTTGTGTTCTTTTTGCTACACCAGGGATGATTAGTGGTGGGTTTTCTCTTGAGGTTTTTAAGCGCTGGGCACCTTCTAAGTTGAATCTTATCACATTGCCCGGGTATTGCGTGGCCGGAACTATTGGGCACAAGTTAATGTCAGGAAAACCCACCAAAATTGATCTGGACAAGGACACTCAAATTGATGTGCAATGCCAGGCTAGTATCTATCAGCTTTACATTCACCAACTGGCATTCAGCCCACATACTGATTCCAAAGGAATCATGGATCTTGTGAAGTTCCTTAGTCCCAAGCACGTGATACTTGTACATGGAGAGAAGCCTAAAATGGTTACTTTAAAGGAGAGGATTCATTCAGAACTGGGAATCCCATGTCATGATCCTGCAAATAACGAGACTGTATCCATTTCTTCAACTCTTTCTATCAAAGCAGAATCCTCAAGCATGTTTATTCAGAGTTGTTCAACTCCCAATTTCAAATTTTTGAAAAGAAACTTGAATGATAAGATTAATTCAAAAGAGTTAAGTTCGAAAGAAGGAGGAACTTCAAGCATGTTCTTCCGCAGACGCTCGAATCCCCATGTCAAGCATTTGAATAGAAATCTTGACGAAAAGTTTGATTCTAGTTTGAGTTGTGGTCCAGAGCTAGAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAACGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTACTTCTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAACTGTAGTCCTATATATTTTGGAAGCTTAGATGATACCCATGTCATGGATTGCATATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATTTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCGAAGGAAAGTTGCCCTTACCGAACTACAAACAGAATTGAAAATGAATCTGCTGCAGCATTCTATTGCTGTAGTTGGCTAGTCGCAGATGAAGTCCTCGCATGGCAAATCATTTCCATCTTGGAGAAGCATGATCTCAGTTCAACATGA

Coding sequence (CDS)

ATGACCATCGATTGTCTCGTTCTTGGCGCTGGGCAAGAAGTTGGGAAGAGTTGTGTGGTCGTCACAATCAATGGAAAGCGAATTATGTTTGATTGCGGCATGCATATGGGCTATCTCGATCATCGTCGATATCCTGATTTCTCTCGCATCTCTGCATCTCGCGATTACAATACTGTTCTTTCCTGTGTCATCATCACACATTTTCACCTGGACCATATAGGTGCTCTTCCATACTTCACCGAAGTTTGTGGCTATAATGGACCCATTTACATGACGTATCCAACATTGGCATTGGCTCCTTTAATGTTGGAGGACTACCGGAAAGTGATGGTTGACCGAAGGGGTGAAGCAGAGCAATTTAGTAATGATCATATTATGGAGTGCATGAAAAAAGTTATACCTGTGGATTTGAAGCAGACTATACAGGTTGATGAAGATCTTCAAATTCGTGCTTACTATGCTGGACATGTTTTAGGAGCTGCCATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACACCTTGGAGCAGCTCAAATTGATCGAATGCAGTTAGACCTTCTTATAACAGAGTCTACATATGCAACAACAATCCGTGATTCCAAATACGGCCGTGAGAGAGAATTTCTTAAAGCTGTTCATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGCATGAATCTAAAGATTCCAATCTACTTTTCAGCAGGTTTGACTGTTCAAGCTAATATGTACTATAAAATGCTCATCAGTTGGACCAGCCAGAAGTTCAAAAGTTTCGACCGTTCTATGATTGATGCTCCTGGGCCTTGTGTTCTTTTTGCTACACCAGGGATGATTAGTGGTGGGTTTTCTCTTGAGGTTTTTAAGCGCTGGGCACCTTCTAAGTTGAATCTTATCACATTGCCCGGGTATTGCGTGGCCGGAACTATTGGGCACAAGTTAATGTCAGGAAAACCCACCAAAATTGATCTGGACAAGGACACTCAAATTGATGTGCAATGCCAGGCTAGTATCTATCAGCTTTACATTCACCAACTGGCATTCAGCCCACATACTGATTCCAAAGGAATCATGGATCTTGTGAAGTTCCTTAGTCCCAAGCACGTGATACTTGTACATGGAGAGAAGCCTAAAATGGTTACTTTAAAGGAGAGGATTCATTCAGAACTGGGAATCCCATGTCATGATCCTGCAAATAACGAGACTGTATCCATTTCTTCAACTCTTTCTATCAAAGCAGAATCCTCAAGCATGTTTATTCAGAGTTGTTCAACTCCCAATTTCAAATTTTTGAAAAGAAACTTGAATGATAAGATTAATTCAAAAGAGTTAAGTTCGAAAGAAGGAGGAACTTCAAGCATGTTCTTCCGCAGACGCTCGAATCCCCATGTCAAGCATTTGAATAGAAATCTTGACGAAAAGTTTGATTCTAGTTTGAGTTGTGGTCCAGAGCTAGAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAACGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTACTTCTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAACTGTAGTCCTATATATTTTGGAAGCTTAGATGATACCCATGTCATGGATTGCATATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATTTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCGAAGGAAAGTTGCCCTTACCGAACTACAAACAGAATTGAAAATGAATCTGCTGCAGCATTCTATTGCTGTAGTTGGCTAGTCGCAGATGAAGTCCTCGCATGGCAAATCATTTCCATCTTGGAGAAGCATGATCTCAGTTCAACATGA

Protein sequence

MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFKSFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLKRNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRVNEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSWLVADEVLAWQIISILEKHDLSST

Homology

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: KAG7011001.1 (Cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1361.3 bits (3522), Expect = 0.0e+00
Identity = 668/668 (100.00%), Postives = 668/668 (100.00%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL
Sbjct: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF
Sbjct: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFKSFDRSMIDAP 300
           LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFKSFDRSMIDAP
Sbjct: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFKSFDRSMIDAP 300

Query: 301 GPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKPTKIDLDKD 360
           GPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKPTKIDLDKD
Sbjct: 301 GPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKPTKIDLDKD 360

Query: 361 TQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMVTLKERIH 420
           TQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMVTLKERIH
Sbjct: 361 TQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMVTLKERIH 420

Query: 421 SELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLKRNLNDKINSKELSSK 480
           SELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLKRNLNDKINSKELSSK
Sbjct: 421 SELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLKRNLNDKINSKELSSK 480

Query: 481 EGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRVNEGILVMENGKKTKV 540
           EGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRVNEGILVMENGKKTKV
Sbjct: 481 EGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRVNEGILVMENGKKTKV 540

Query: 541 VHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLWLSQLSSKLSSELSDR 600
           VHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLWLSQLSSKLSSELSDR
Sbjct: 541 VHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLWLSQLSSKLSSELSDR 600

Query: 601 NVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSWLVADEVLAWQIISIL 660
           NVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSWLVADEVLAWQIISIL
Sbjct: 601 NVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSWLVADEVLAWQIISIL 660

Query: 661 EKHDLSST 669
           EKHDLSST
Sbjct: 661 EKHDLSST 668

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: XP_022944195.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbita moschata])

HSP 1 Score: 1326.6 bits (3432), Expect = 0.0e+00
Identity = 659/683 (96.49%), Postives = 659/683 (96.49%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL
Sbjct: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF
Sbjct: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       IHQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------IHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540
           RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV
Sbjct: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW
Sbjct: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
           LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW
Sbjct: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660

Query: 661 LVADEVLAWQIISILEKHDLSST 669
           LVADEVLAWQIISILEKHDLSST
Sbjct: 661 LVADEVLAWQIISILEKHDLSST 676

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: XP_022986472.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbita maxima])

HSP 1 Score: 1315.1 bits (3402), Expect = 0.0e+00
Identity = 653/683 (95.61%), Postives = 655/683 (95.90%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL
Sbjct: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SCVIITHFHLDHIGALPYFTEVCGYNGPIYMT+PT+ALAPLMLEDYRKVMVDRRGEAEQF
Sbjct: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTFPTMALAPLMLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       IHQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------IHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSS FIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSTFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540
           RNLNDKINSKELSSKEGGTSSMF RRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV
Sbjct: 481 RNLNDKINSKELSSKEGGTSSMFTRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVME GKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW
Sbjct: 541 NEGILVMEKGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
           LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW
Sbjct: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660

Query: 661 LVADEVLAWQIISILEKHDLSST 669
           LV DEVLAWQIISILEKHDLSST
Sbjct: 661 LVTDEVLAWQIISILEKHDLSST 676

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: XP_023513382.1 (cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1313.9 bits (3399), Expect = 0.0e+00
Identity = 653/683 (95.61%), Postives = 655/683 (95.90%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL
Sbjct: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF
Sbjct: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       IHQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------IHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSS FIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSTFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540
           RNLNDKINSKELSSKEGGTSSMF RRRSNPHVKHLNRNLDEKFDSSLSCGPE+EVSDDRV
Sbjct: 481 RNLNDKINSKELSSKEGGTSSMFIRRRSNPHVKHLNRNLDEKFDSSLSCGPEIEVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVME GKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHV+ CISRKSLW
Sbjct: 541 NEGILVMEKGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVIVCISRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
           LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW
Sbjct: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660

Query: 661 LVADEVLAWQIISILEKHDLSST 669
           LVADEVLAWQIISILEKHDLSST
Sbjct: 661 LVADEVLAWQIISILEKHDLSST 676

[Close]

BLAST of Carg26838 vs. NCBI nr
Match: XP_038901162.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901163.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901164.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901165.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901166.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901167.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901168.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida])

HSP 1 Score: 1222.6 bits (3162), Expect = 0.0e+00
Identity = 596/685 (87.01%), Postives = 630/685 (91.97%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMH+GY+DH +YPDFSRI AS DYNT L
Sbjct: 1   MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHHQYPDFSRIPASCDYNTAL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFHLDHIGALPYFTEVCGYNGPIYMTYPT+ALAPLMLEDYRKV+VDRRGEAEQF
Sbjct: 61  SCIIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPLMLEDYRKVLVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +NDHIMECMKKV+PVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 TNDHIMECMKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELC+LLDDYWERMNLK+PIY SAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCVLLDDYWERMNLKVPIYVSAGLTVQANMYYKMLISWTSQKVKETYSTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPC+LFATPGMISGGFSLEVFKRWAPSK NLITLPGYCVAGT+GH
Sbjct: 301 FKNVQKFDRSMIDAPGPCILFATPGMISGGFSLEVFKRWAPSKSNLITLPGYCVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       IHQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------IHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKM TLK+RIHSELGIPC+DPANNETVSISSTLS+KAE+S MFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMATLKQRIHSELGIPCYDPANNETVSISSTLSVKAEASRMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKI--NSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDD 540
           RNLN+K+  N K+LS K GGTS +F R+ SN H K+LNRNLD KFDSS SCGPEL+VSDD
Sbjct: 481 RNLNNKVDPNLKDLSCKAGGTSRVFIRKCSNHHFKYLNRNLDTKFDSSFSCGPELQVSDD 540

Query: 541 RVNEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKS 600
           RVNEGILVME GKKTKV+HQDE+LLLLGEQEHEVRFANC PIYFG+L++THVMDC+SRKS
Sbjct: 541 RVNEGILVMEKGKKTKVLHQDEVLLLLGEQEHEVRFANCRPIYFGNLEETHVMDCLSRKS 600

Query: 601 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 660
           LWLSQL SKLSSELSD+NVQN GEYLQVESFTLSICSKE CPYRTTNRIENES   F CC
Sbjct: 601 LWLSQLFSKLSSELSDKNVQNLGEYLQVESFTLSICSKEDCPYRTTNRIENESTIVFCCC 660

Query: 661 SWLVADEVLAWQIISILEKHDLSST 669
           SWL+ADE+LAW+IISILEKH+L ST
Sbjct: 661 SWLIADEILAWKIISILEKHNLGST 678

[Close]

BLAST of Carg26838 vs. ExPASy Swiss-Prot
Match: Q8GUU3 (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana OX=3702 GN=CPSF73-II PE=1 SV=2)

HSP 1 Score: 817.4 bits (2110), Expect = 1.2e-235
Identity = 409/676 (60.50%), Postives = 486/676 (71.89%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHMG  DH RYP+FS IS S D++  +
Sbjct: 1   MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFH+DH+GALPYFTEVCGYNGPIYM+YPT AL+PLMLEDYR+VMVDRRGE E F
Sbjct: 61  SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +  HI  CMKKVI +DLKQTIQVDEDLQIRAYYAGHVLGA M YAK+GDAA+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           T DRHLGAA+IDR+QLDLLI+ESTYATTIR SKY REREFL+AVH CVA GGK LIP+FA
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQ------------- 300
           LGRAQELC+LLDDYWERMN+K+PIYFS+GLT+QANMYYKMLISWTSQ             
Sbjct: 241 LGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFD 300

Query: 301 --KFKSFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
               K FDRS+I APGPCVLFATPGM+  GFSLEVFK WAPS LNL+ LPGY VAGT+GH
Sbjct: 301 FKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLM+GKPT +DL   T++DV+C+       +HQ+AFSPHTD+KGIMDL KFLSPK+V+LV
Sbjct: 361 KLMAGKPTTVDLYNGTKVDVRCK-------VHQVAFSPHTDAKGIMDLTKFLSPKNVVLV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKP M+ LKE+I SEL IPC  PAN ETVS +ST  IKA +S MF++SCS PNFKF  
Sbjct: 421 HGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKSCSNPNFKF-- 480

Query: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540
                                                          S   +L V+D R 
Sbjct: 481 -----------------------------------------------SNSTQLRVTDHRT 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
            +G+LV+E  KK K+VHQDE+  +L E+ H V  A+C P+      +   +D I      
Sbjct: 541 ADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKGESEDDDVDLI------ 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
             QLS+K+   +S   +      LQV SF  S+C K+ C +R+++   + S A F CC+W
Sbjct: 601 -KQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSSS---SSSEAVFLCCNW 610

Query: 661 LVADEVLAWQIISILE 662
            +AD  L W+II+ ++
Sbjct: 661 SIADLELGWEIINAIK 610

[Close]

BLAST of Carg26838 vs. ExPASy Swiss-Prot
Match: Q54YL3 (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum OX=44689 GN=ints11 PE=3 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 5.9e-166
Identity = 287/506 (56.72%), Postives = 371/506 (73.32%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTI  + LGAGQ+VG+SCV+VTI  K IMFDCGMHMG  D RR+PDFS IS +  +  V+
Sbjct: 1   MTIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVI 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
            CVIITHFHLDH GALP+FTE+CGY+GPIYMT PT A+ P++LEDYRK+ V+++GE   F
Sbjct: 61  DCVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +   I +CMKKVIPV+L QTI+VDE+L I+AYYAGHVLGAAMFYAKVGD ++VYTGDYNM
Sbjct: 121 TAQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLG+A ID+++ D+LITE+TYATTIRDSK GRER+FLK +H CV  GGKVLIP FA
Sbjct: 181 TPDRHLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFA 240

Query: 241 LGRAQELCILLDDYWERMNL-KIPIYFSAGLTVQANMYYKMLISWTSQKFKS-------- 300
           LGR QELCIL+D YWE+MNL  IPIYFSAGL  +AN+YYK+ I+WT+QK K         
Sbjct: 241 LGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFINWTNQKIKQTFVKRNMF 300

Query: 301 -------FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIG 360
                  F   ++DAPG  VLFATPGM+  G SLEVFK+WAP++LN+  +PGYCV GT+G
Sbjct: 301 DFKHIKPFQSHLVDAPGAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCVVGTVG 360

Query: 361 HKLMS--------GKPTK--IDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLV 420
           +KL++         KP    +++DK T I+V+C+       IH L+FS H D+KGI+ L+
Sbjct: 361 NKLLTTGSDQQQQSKPQSQMVEIDKKTTIEVKCK-------IHNLSFSAHADAKGILQLI 420

Query: 421 KFLSPKHVILVHGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAE-SSSMFI 480
           K  +P++VILVHGEK KM  L ++I  E+G+ C+ PAN  T+ I +  SI  + S ++  
Sbjct: 421 KMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTIIIDTMKSIPIDISLNLLK 480

[Close]

BLAST of Carg26838 vs. ExPASy Swiss-Prot
Match: Q5ZIH0 (Integrator complex subunit 11 OS=Gallus gallus OX=9031 GN=INTS11 PE=2 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 9.4e-156
Identity = 262/457 (57.33%), Postives = 341/457 (74.62%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAGQ+VG+SC++V+I GK +M DCGMHMGY D RR+PDFS I+ +      L CVII+H
Sbjct: 9   LGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISH 68

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FHLDH GALPYF+E+ GY+GPIYMT+PT A+ P++LEDYRK+ VD++GE   F++  I +
Sbjct: 69  FHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKD 128

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
           CMKKV+ V L QT+QVDE+L+I+AYYAGHVLGAAMF  KVG  ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTPDRHLG 188

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA ID+ + DLLITESTYATTIRDSK  RER+FLK VH  V  GGKVLIP FALGRAQEL
Sbjct: 189 AAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQEL 248

Query: 248 CILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK---------------FKSF 307
           CILL+ +WERMNLK PIYFS GLT +AN YYK+ I+WT+QK                K+F
Sbjct: 249 CILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAF 308

Query: 308 DRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKP 367
           DR+  D PGP V+FATPGM+  G SL++F++WA ++ N++ +PGYCV GT+GHK++SG+ 
Sbjct: 309 DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQ- 368

Query: 368 TKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKM 427
            K++++    ++V+ Q       +  ++FS H D+KGIM L++   P++V+LVHGE  KM
Sbjct: 369 RKLEMEGRQILEVKMQ-------VEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGEAKKM 428

Query: 428 VTLKERIHSELGIPCHDPANNETVSISSTLSIKAESS 450
             LK++I  E  + C+ PAN ET +I +  SI  + S
Sbjct: 429 EFLKQKIEQEFHVNCYMPANGETTTIFTNPSIPVDIS 457

[Close]

BLAST of Carg26838 vs. ExPASy Swiss-Prot
Match: Q9CWS4 (Integrator complex subunit 11 OS=Mus musculus OX=10090 GN=Ints11 PE=1 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.2e-155
Identity = 272/518 (52.51%), Postives = 363/518 (70.08%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAGQ+VG+SC++V+I+GK +M DCGMHMGY D RR+PDFS I+ S      L CVII+H
Sbjct: 9   LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FHLDH GALPYF+E+ GY+GPIYMT+PT A+ P++LEDYRK+ VD++GEA  F++  I +
Sbjct: 69  FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
           CMKKV+ V L QT+QVD++L+I+AYYAGHVLGAAMF  KVG  ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA ID+ + +LLITESTYATTIRDSK  RER+FLK VH  V  GGKVLIP FALGRAQEL
Sbjct: 189 AAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQEL 248

Query: 248 CILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK---------------FKSF 307
           CILL+ +WERMNLK+PIYFS GLT +AN YYK+ I+WT+QK                K+F
Sbjct: 249 CILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAF 308

Query: 308 DRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKP 367
           DR+  D PGP V+FATPGM+  G SL++F++WA ++ N++ +PGYCV GT+GHK++SG+ 
Sbjct: 309 DRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQ- 368

Query: 368 TKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKM 427
            K++++    ++V+ Q       +  ++FS H D+KGIM LV    P+ V+LVHGE  KM
Sbjct: 369 RKLEMEGRQMLEVKMQ-------VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKM 428

Query: 428 VTLKERIHSELGIPCHDPANNETVSISSTLSI---------KAESSSMFIQSCSTPNF-- 487
             L+++I  E  + C+ PAN ETV++ ++ SI         K E     +     P    
Sbjct: 429 EFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKREMVQGLLPEAKKPRLLH 488

Query: 488 -KFLKRNLNDKINSKELSSKEGGTSSMFFRRRSNPHVK 499
              + ++ N ++ S E + KE G +    R     H++
Sbjct: 489 GTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLQ 518

[Close]

BLAST of Carg26838 vs. ExPASy Swiss-Prot
Match: Q3MHC2 (Integrator complex subunit 11 OS=Rattus norvegicus OX=10116 GN=Ints11 PE=2 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 1.6e-155
Identity = 272/518 (52.51%), Postives = 363/518 (70.08%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAGQ+VG+SC++V+I+GK +M DCGMHMGY D RR+PDFS I+ S      L CVII+H
Sbjct: 9   LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FHLDH GALPYF+E+ GY+GPIYMT+PT A+ P++LEDYRK+ VD++GEA  F++  I +
Sbjct: 69  FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
           CMKKV+ V L QT+QVD++L+I+AYYAGHVLGAAMF  KVG  ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA ID+ + +LLITESTYATTIRDSK  RER+FLK VH  V  GGKVLIP FALGRAQEL
Sbjct: 189 AAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQEL 248

Query: 248 CILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK---------------FKSF 307
           CILL+ +WERMNLK+PIYFS GLT +AN YYK+ I+WT+QK                K+F
Sbjct: 249 CILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAF 308

Query: 308 DRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKP 367
           DR+  D PGP V+FATPGM+  G SL++F++WA ++ N++ +PGYCV GT+GHK++SG+ 
Sbjct: 309 DRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQ- 368

Query: 368 TKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKM 427
            K++++    ++V+ Q       +  ++FS H D+KGIM LV    P+ V+LVHGE  KM
Sbjct: 369 RKLEMEGRQMLEVKMQ-------VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKM 428

Query: 428 VTLKERIHSELGIPCHDPANNETVSISSTLSI---------KAESSSMFIQSCSTPNF-- 487
             L+++I  E  + C+ PAN ETV++ ++ SI         K E     +     P    
Sbjct: 429 EFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKREMVQGLLPEAKKPRLLH 488

Query: 488 -KFLKRNLNDKINSKELSSKEGGTSSMFFRRRSNPHVK 499
              + ++ N ++ S E + KE G +    R     H++
Sbjct: 489 GTLIMKDNNFRLVSSEQALKELGLAEHQLRFTCRVHLQ 518

[Close]

BLAST of Carg26838 vs. ExPASy TrEMBL
Match: A0A6J1FYI7 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448716 PE=3 SV=1)

HSP 1 Score: 1326.6 bits (3432), Expect = 0.0e+00
Identity = 659/683 (96.49%), Postives = 659/683 (96.49%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL
Sbjct: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF
Sbjct: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       IHQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------IHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540
           RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV
Sbjct: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW
Sbjct: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
           LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW
Sbjct: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660

Query: 661 LVADEVLAWQIISILEKHDLSST 669
           LVADEVLAWQIISILEKHDLSST
Sbjct: 661 LVADEVLAWQIISILEKHDLSST 676

[Close]

BLAST of Carg26838 vs. ExPASy TrEMBL
Match: A0A6J1J7M0 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484204 PE=3 SV=1)

HSP 1 Score: 1315.1 bits (3402), Expect = 0.0e+00
Identity = 653/683 (95.61%), Postives = 655/683 (95.90%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL
Sbjct: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SCVIITHFHLDHIGALPYFTEVCGYNGPIYMT+PT+ALAPLMLEDYRKVMVDRRGEAEQF
Sbjct: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTFPTMALAPLMLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       IHQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------IHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSS FIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSTFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540
           RNLNDKINSKELSSKEGGTSSMF RRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV
Sbjct: 481 RNLNDKINSKELSSKEGGTSSMFTRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVME GKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW
Sbjct: 541 NEGILVMEKGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
           LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW
Sbjct: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660

Query: 661 LVADEVLAWQIISILEKHDLSST 669
           LV DEVLAWQIISILEKHDLSST
Sbjct: 661 LVTDEVLAWQIISILEKHDLSST 676

[Close]

BLAST of Carg26838 vs. ExPASy TrEMBL
Match: A0A1S3C9L2 (cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo OX=3656 GN=LOC103498350 PE=3 SV=1)

HSP 1 Score: 1216.4 bits (3146), Expect = 0.0e+00
Identity = 600/686 (87.46%), Postives = 627/686 (91.40%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMH+GY+DHRRYPDFSRISASRDYN  L
Sbjct: 1   MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFHLDHIGALPYFTE+CGYNGPIYMTYPT+ALAP+ LEDYRKVMVDRRGEAEQF
Sbjct: 61  SCIIITHFHLDHIGALPYFTEICGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +NDHIMEC+KKV+PVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 TNDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKY REREFLKAVHNC+ASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELC+LLDDYWERMNLK PIY SAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMIS GFSLEVFKRWAPSKLNLITLPGYCVAGT+GH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDKDTQIDVQCQ       +HQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKDTQIDVQCQ-------VHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKM  LKERIHSELGIPCHDPANNETVSISSTLSIKAE+SSMFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINS--KELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDD 540
           RNL DKI+   K+LS K   TS+M  R  SNPH KHLNRNLD KFDSSLSCGPEL+VSDD
Sbjct: 481 RNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDSSLSCGPELQVSDD 540

Query: 541 RVNEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKS 600
           RVNEGILVMENGKKTK +HQDELLLLLGEQEHEVRFA+C PIYFGSLD+ HVMD +SRKS
Sbjct: 541 RVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKS 600

Query: 601 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAA-AFYC 660
           LWLSQLS KLS+ELSDRNVQN GEYLQVES TLSICSKE+CPYRTTNRIENES+A  F C
Sbjct: 601 LWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESSAMVFCC 660

Query: 661 CSWLVADEVLAWQIISILEKHDLSST 669
           CSWLVADE+LAW+IISILEKHDL ST
Sbjct: 661 CSWLVADEILAWKIISILEKHDLGST 679

[Close]

BLAST of Carg26838 vs. ExPASy TrEMBL
Match: A0A0A0LQW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435430 PE=3 SV=1)

HSP 1 Score: 1196.8 bits (3095), Expect = 0.0e+00
Identity = 591/684 (86.40%), Postives = 620/684 (90.64%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMH+GY+DHRRYPDFSRISAS DYN VL
Sbjct: 1   MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVL 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFHLDHIGALPYFTEVCGYNGPIYMTYPT+ALAP+ LEDYRKVMVDRRGEAEQF
Sbjct: 61  SCIIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +NDHIMEC+KKV+PVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM
Sbjct: 121 TNDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKY REREFLKAVHNC+ASGGKVLIPTFA
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------- 300
           LGRAQELC+LLDDYWERMNLK PIY SAGLTVQANMYYKMLISWTSQK K          
Sbjct: 241 LGRAQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFD 300

Query: 301 -----SFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
                 FDRSMIDAPGPCVLFATPGMIS GFSLEVFKRWAPSKLNLITLPGYCVAGT+GH
Sbjct: 301 FKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLMSGKPTKIDLDK TQIDVQCQ       +HQLAFSPHTDSKGIMDLVKFLSPKHVILV
Sbjct: 361 KLMSGKPTKIDLDKVTQIDVQCQ-------VHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKPKM  LKERIHSELGIPCHDPANNETVSISSTLS+KAE+SSMFIQSCSTPNFKFLK
Sbjct: 421 HGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLK 480

Query: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540
           RNL D  + K+LS K   TS+M  R  SNPH KHL RNLD KFDSSLSCGP L+VSDDRV
Sbjct: 481 RNLIDP-DLKDLSYKAERTSNMLIRECSNPHFKHLKRNLDAKFDSSLSCGPALQVSDDRV 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
           NEGILVMENGKKTK +HQDELLLLLG+QEHEVRFA+C PIYFGSLD+ HVMD +SRKSLW
Sbjct: 541 NEGILVMENGKKTKALHQDELLLLLGQQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLW 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAA-AFYCCS 660
           LSQLS KLS+ELSDRNVQN GEYLQVES TLSICSKE+CPYRT +RI+NES A  F CCS
Sbjct: 601 LSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTIDRIKNESTAMVFCCCS 660

Query: 661 WLVADEVLAWQIISILEKHDLSST 669
           WLVADE+LAW+IISILEKHDL ST
Sbjct: 661 WLVADEILAWKIISILEKHDLGST 676

[Close]

BLAST of Carg26838 vs. ExPASy TrEMBL
Match: Q6E435 (ACT11D09.9 OS=Cucumis melo OX=3656 GN=ACT11D09.9 PE=3 SV=1)

HSP 1 Score: 1181.4 bits (3055), Expect = 0.0e+00
Identity = 588/678 (86.73%), Postives = 613/678 (90.41%), Query Frame = 0


Query: 10  AGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITHFH 69
           AGQEVGKSCVVVTINGKRIMFDCGMH+GY+DHRRYPDFSRISASRDYN  LSC+IITHFH
Sbjct: 42  AGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTLSCIIITHFH 101

Query: 70  LDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIMECM 129
           LDHIGALPYFTE+CGYNGPIYMTYPT+ALAP+ LEDYRKVMVDRRGEAEQF+NDHIMEC+
Sbjct: 102 LDHIGALPYFTEICGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTNDHIMECL 161

Query: 130 KKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAA 189
           KKV+PVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAA
Sbjct: 162 KKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAA 221

Query: 190 QIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRA-QELC 249
           QIDRMQLDLLITESTYATTIRDSKY REREFLKAVHNC+ASGGKVLIPTFALGRA QELC
Sbjct: 222 QIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQQELC 281

Query: 250 ILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKFK---------------SFD 309
           +LLDDYWERMNLK PIY SAGLTVQANMYYKMLISWTSQK K                FD
Sbjct: 282 VLLDDYWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFD 341

Query: 310 RSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGKPT 369
           RSMIDAPGPCVLFATPGMIS GFSLEVFKRWAPSKLNLITLPGYCVAGT+GHKLMSGKPT
Sbjct: 342 RSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPT 401

Query: 370 KIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMV 429
           KIDLDKDTQIDV           HQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKM 
Sbjct: 402 KIDLDKDTQIDV-----------HQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMA 461

Query: 430 TLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLKRNLNDKIN 489
            LKERIHSELGIPCHDPANNETVSISSTLSIKAE+SSMFIQSCSTPNFKFLKRNL DKI+
Sbjct: 462 VLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMFIQSCSTPNFKFLKRNLIDKID 521

Query: 490 S--KELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRVNEGILV 549
              K+LS K   TS+M  R  SNPH KHLNRNLD KFDSSLS GPEL+VSDDRVNEGILV
Sbjct: 522 PDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDSSLSGGPELQVSDDRVNEGILV 581

Query: 550 MENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLWLSQLSS 609
           MENGKKTK +HQDELLLLLGEQEHEVRFA+C PIYFGSLD+ HVMD +SRKSLWLSQLS 
Sbjct: 582 MENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSF 641

Query: 610 KLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAA-AFYCCSWLVADE 669
           KLS+ELSDRNVQN GEYLQVES TLSICSKE+CPYRTTNRIENES A  F CCSWLVADE
Sbjct: 642 KLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESTAMVFCCCSWLVADE 701

[Close]

BLAST of Carg26838 vs. TAIR 10
Match: AT2G01730.1 (cleavage and polyadenylation specificity factor 73 kDa subunit-II )

HSP 1 Score: 817.4 bits (2110), Expect = 8.5e-237
Identity = 409/676 (60.50%), Postives = 486/676 (71.89%), Query Frame = 0


Query: 1   MTIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVL 60
           M IDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHMG  DH RYP+FS IS S D++  +
Sbjct: 1   MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60

Query: 61  SCVIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQF 120
           SC+IITHFH+DH+GALPYFTEVCGYNGPIYM+YPT AL+PLMLEDYR+VMVDRRGE E F
Sbjct: 61  SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120

Query: 121 SNDHIMECMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
           +  HI  CMKKVI +DLKQTIQVDEDLQIRAYYAGHVLGA M YAK+GDAA+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180

Query: 181 TPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFA 240
           T DRHLGAA+IDR+QLDLLI+ESTYATTIR SKY REREFL+AVH CVA GGK LIP+FA
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFA 240

Query: 241 LGRAQELCILLDDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQ------------- 300
           LGRAQELC+LLDDYWERMN+K+PIYFS+GLT+QANMYYKMLISWTSQ             
Sbjct: 241 LGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFD 300

Query: 301 --KFKSFDRSMIDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGH 360
               K FDRS+I APGPCVLFATPGM+  GFSLEVFK WAPS LNL+ LPGY VAGT+GH
Sbjct: 301 FKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGH 360

Query: 361 KLMSGKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILV 420
           KLM+GKPT +DL   T++DV+C+       +HQ+AFSPHTD+KGIMDL KFLSPK+V+LV
Sbjct: 361 KLMAGKPTTVDLYNGTKVDVRCK-------VHQVAFSPHTDAKGIMDLTKFLSPKNVVLV 420

Query: 421 HGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSSMFIQSCSTPNFKFLK 480
           HGEKP M+ LKE+I SEL IPC  PAN ETVS +ST  IKA +S MF++SCS PNFKF  
Sbjct: 421 HGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKSCSNPNFKF-- 480

Query: 481 RNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKFDSSLSCGPELEVSDDRV 540
                                                          S   +L V+D R 
Sbjct: 481 -----------------------------------------------SNSTQLRVTDHRT 540

Query: 541 NEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFGSLDDTHVMDCISRKSLW 600
            +G+LV+E  KK K+VHQDE+  +L E+ H V  A+C P+      +   +D I      
Sbjct: 541 ADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKGESEDDDVDLI------ 600

Query: 601 LSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSW 660
             QLS+K+   +S   +      LQV SF  S+C K+ C +R+++   + S A F CC+W
Sbjct: 601 -KQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSSS---SSSEAVFLCCNW 610

Query: 661 LVADEVLAWQIISILE 662
            +AD  L W+II+ ++
Sbjct: 661 SIADLELGWEIINAIK 610

[Close]

BLAST of Carg26838 vs. TAIR 10
Match: AT1G61010.1 (cleavage and polyadenylation specificity factor 73-I )

HSP 1 Score: 285.0 bits (728), Expect = 1.5e-76
Identity = 159/433 (36.72%), Postives = 234/433 (54.04%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAG EVG+SCV ++  GK I+FDCG+H  Y      P F  I  S      +  ++ITH
Sbjct: 27  LGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPSS-----IDVLLITH 86

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FH+DH  +LPYF E   +NG ++MT+ T A+  L+L DY KV      E   F    I +
Sbjct: 87  FHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINK 146

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
            M K+  +D  QT++V+  ++   Y AGHVLGAAMF   +    ++YTGDY+   DRHL 
Sbjct: 147 SMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLR 206

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA++ +   D+ I EST    +  S++ RE+ F   +H+ VA GG+VLIP FALGRAQEL
Sbjct: 207 AAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQEL 266

Query: 248 CILLDDYWERMN--LKIPIYFSAGLTVQANMYYKMLISWTSQKFKS-FDRSM-------- 307
            ++LD+YW        IPIY+++ L  +    Y+  I   + + ++ F  S         
Sbjct: 267 LLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHIS 326

Query: 308 -------IDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMS 367
                   +  GP V+ ATPG +  G S ++F  W   K N   +PGY V GT+  K + 
Sbjct: 327 PLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLA-KTII 386

Query: 368 GKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEK 423
            +P ++ L       +  Q       +H ++FS H D       +K L P ++ILVHGE 
Sbjct: 387 NEPKEVTLMNGLTAPLNMQ-------VHYISFSAHADYAQTSTFLKELMPPNIILVHGEA 444

[Close]

BLAST of Carg26838 vs. TAIR 10
Match: AT1G61010.2 (cleavage and polyadenylation specificity factor 73-I )

HSP 1 Score: 285.0 bits (728), Expect = 1.5e-76
Identity = 159/433 (36.72%), Postives = 234/433 (54.04%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAG EVG+SCV ++  GK I+FDCG+H  Y      P F  I  S      +  ++ITH
Sbjct: 27  LGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPSS-----IDVLLITH 86

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FH+DH  +LPYF E   +NG ++MT+ T A+  L+L DY KV      E   F    I +
Sbjct: 87  FHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINK 146

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
            M K+  +D  QT++V+  ++   Y AGHVLGAAMF   +    ++YTGDY+   DRHL 
Sbjct: 147 SMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLR 206

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA++ +   D+ I EST    +  S++ RE+ F   +H+ VA GG+VLIP FALGRAQEL
Sbjct: 207 AAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQEL 266

Query: 248 CILLDDYWERMN--LKIPIYFSAGLTVQANMYYKMLISWTSQKFKS-FDRSM-------- 307
            ++LD+YW        IPIY+++ L  +    Y+  I   + + ++ F  S         
Sbjct: 267 LLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHIS 326

Query: 308 -------IDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMS 367
                   +  GP V+ ATPG +  G S ++F  W   K N   +PGY V GT+  K + 
Sbjct: 327 PLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLA-KTII 386

Query: 368 GKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEK 423
            +P ++ L       +  Q       +H ++FS H D       +K L P ++ILVHGE 
Sbjct: 387 NEPKEVTLMNGLTAPLNMQ-------VHYISFSAHADYAQTSTFLKELMPPNIILVHGEA 444

[Close]

BLAST of Carg26838 vs. TAIR 10
Match: AT1G61010.3 (cleavage and polyadenylation specificity factor 73-I )

HSP 1 Score: 285.0 bits (728), Expect = 1.5e-76
Identity = 159/433 (36.72%), Postives = 234/433 (54.04%), Query Frame = 0


Query: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITH 67
           LGAG EVG+SCV ++  GK I+FDCG+H  Y      P F  I  S      +  ++ITH
Sbjct: 27  LGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPSS-----IDVLLITH 86

Query: 68  FHLDHIGALPYFTEVCGYNGPIYMTYPTLALAPLMLEDYRKVMVDRRGEAEQFSNDHIME 127
           FH+DH  +LPYF E   +NG ++MT+ T A+  L+L DY KV      E   F    I +
Sbjct: 87  FHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINK 146

Query: 128 CMKKVIPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
            M K+  +D  QT++V+  ++   Y AGHVLGAAMF   +    ++YTGDY+   DRHL 
Sbjct: 147 SMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLR 206

Query: 188 AAQIDRMQLDLLITESTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQEL 247
           AA++ +   D+ I EST    +  S++ RE+ F   +H+ VA GG+VLIP FALGRAQEL
Sbjct: 207 AAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQEL 266

Query: 248 CILLDDYWERMN--LKIPIYFSAGLTVQANMYYKMLISWTSQKFKS-FDRSM-------- 307
            ++LD+YW        IPIY+++ L  +    Y+  I   + + ++ F  S         
Sbjct: 267 LLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHIS 326

Query: 308 -------IDAPGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMS 367
                   +  GP V+ ATPG +  G S ++F  W   K N   +PGY V GT+  K + 
Sbjct: 327 PLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLA-KTII 386

Query: 368 GKPTKIDLDKDTQIDVQCQASIYQLYIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEK 423
            +P ++ L       +  Q       +H ++FS H D       +K L P ++ILVHGE 
Sbjct: 387 NEPKEVTLMNGLTAPLNMQ-------VHYISFSAHADYAQTSTFLKELMPPNIILVHGEA 444

[Close]

BLAST of Carg26838 vs. TAIR 10
Match: AT5G23880.1 (cleavage and polyadenylation specificity factor 100 )

HSP 1 Score: 146.7 bits (369), Expect = 6.5e-35
Identity = 102/363 (28.10%), Postives = 165/363 (45.45%), Query Frame = 0


Query: 20  VVTINGKRIMFDCGMHMGYLDHRRYPDFSRISASRDYNTVLSCVIITHFHLDHIGALPYF 79
           +V+I+G   + DCG +    D       SR++++ D       V+++H    HIGALPY 
Sbjct: 22  LVSIDGFNFLIDCGWN-DLFDTSLLEPLSRVASTID------AVLLSHPDTLHIGALPYA 81

Query: 80  TEVCGYNGPIYMTYPTLALAPLMLEDY---RKVMVDRRGEAEQFSNDHIMECMKKVIPVD 139
            +  G + P+Y T P   L  L + D    RK + D     + F+ D I    + VI + 
Sbjct: 82  MKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSD----FDLFTLDDIDSAFQNVIRLT 141

Query: 140 LKQTIQVD---EDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR 199
             Q   +    E + I  + AGH+LG +++        ++Y  DYN   +RHL    +  
Sbjct: 142 YSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERHLNGTVLQS 201

Query: 200 -MQLDLLITESTYAT-TIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILL 259
            ++  +LIT++ +A  T + ++  R++EFL  +   +  GG VL+P    GR  EL ++L
Sbjct: 202 FVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLIL 261

Query: 260 DDYWERMNLKIPIYFSAGLTVQANMYYKMLISWTSQKF-KSFDRSMIDA----------- 319
           + +W +     PIYF   ++     Y K  + W S    KSF+ S  +A           
Sbjct: 262 EQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAFLLRHVTLLIN 321

Query: 320 --------PGPCVLFATPGMISGGFSLEVFKRWAPSKLNLITLPGYCVAGTIGHKLMSGK 355
                   PGP V+ A+   +  GF+ E+F  WA    NL+        GT+   L S  
Sbjct: 322 KTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFGTLARMLQSAP 373

The following BLAST results are available for this feature:

BLAST of Carg26838 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011001.1	0.0e+00	100.00	Cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita argyrosp...	[more]
XP_022944195.1	0.0e+00	96.49	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbi...	[more]
XP_022986472.1	0.0e+00	95.61	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbi...	[more]
XP_023513382.1	0.0e+00	95.61	cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita pepo sub...	[more]
XP_038901162.1	0.0e+00	87.01	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Beninca...	[more]

BLAST of Carg26838 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GUU3	1.2e-235	60.50	Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thal...	[more]
Q54YL3	5.9e-166	56.72	Integrator complex subunit 11 homolog OS=Dictyostelium discoideum OX=44689 GN=in...	[more]
Q5ZIH0	9.4e-156	57.33	Integrator complex subunit 11 OS=Gallus gallus OX=9031 GN=INTS11 PE=2 SV=1	[more]
Q9CWS4	1.2e-155	52.51	Integrator complex subunit 11 OS=Mus musculus OX=10090 GN=Ints11 PE=1 SV=1	[more]
Q3MHC2	1.6e-155	52.51	Integrator complex subunit 11 OS=Rattus norvegicus OX=10116 GN=Ints11 PE=2 SV=1	[more]

BLAST of Carg26838 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYI7	0.0e+00	96.49	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucur...	[more]
A0A6J1J7M0	0.0e+00	95.61	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucur...	[more]
A0A1S3C9L2	0.0e+00	87.46	cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo OX=...	[more]
A0A0A0LQW3	0.0e+00	86.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435430 PE=3 SV=1	[more]
Q6E435	0.0e+00	86.73	ACT11D09.9 OS=Cucumis melo OX=3656 GN=ACT11D09.9 PE=3 SV=1	[more]

BLAST of Carg26838 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01730.1	8.5e-237	60.50	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[more]
AT1G61010.1	1.5e-76	36.72	cleavage and polyadenylation specificity factor 73-I	[more]
AT1G61010.2	1.5e-76	36.72	cleavage and polyadenylation specificity factor 73-I	[more]
AT1G61010.3	1.5e-76	36.72	cleavage and polyadenylation specificity factor 73-I	[more]
AT5G23880.1	6.5e-35	28.10	cleavage and polyadenylation specificity factor 100	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001279	Metallo-beta-lactamase	SMART	SM00849	Lactamase_B_5a	coord: 15..232 e-value: 1.8E-20 score: 84.0
IPR001279	Metallo-beta-lactamase	PFAM	PF16661	Lactamase_B_6	coord: 21..192 e-value: 2.5E-19 score: 69.4
IPR022712	Beta-Casp domain	SMART	SM01027	Beta_Casp_2	coord: 244..347 e-value: 2.4E-26 score: 103.5
IPR022712	Beta-Casp domain	PFAM	PF10996	Beta-Casp	coord: 244..347 e-value: 2.2E-22 score: 79.5
IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	PFAM	PF07521	RMMBL	coord: 376..428 e-value: 3.6E-12 score: 46.1
None	No IPR available	GENE3D	3.40.50.10890		coord: 212..377 e-value: 2.5E-129 score: 433.4
None	No IPR available	PANTHER	PTHR11203:SF37	INTEGRATOR COMPLEX SUBUNIT 11	coord: 1..662
None	No IPR available	PANTHER	PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	coord: 1..662
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	GENE3D	3.60.15.10		coord: 8..419 e-value: 2.5E-129 score: 433.4
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	SUPERFAMILY	56281	Metallo-hydrolase/oxidoreductase	coord: 4..439
IPR041897	Integrator complex subunit 11, MBL-fold	CDD	cd16291	INTS11-like_MBL-fold	coord: 5..203 e-value: 5.00365E-131 score: 382.379

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26838-RA	Carg26838-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010197	polar nucleus fusion
biological_process	GO:0016180	snRNA processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus