Carg26822 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26822
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr16: 7688787 .. 7689053 (+)
RNA-Seq Expression	Carg26822
Synteny	Carg26822

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTCCCAGGAAAGTAGCGAAGTTCAGATTCCACATTGTAGCAGCCCTAATCCTATCCCTAATTCTCTTCTCCCTCCTCCTCCTCGCCCCCAAATTCCTCTCCCTCCTCGCCTTCTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTTCTCGCCGTCCTCCTCTTCACCAACACCTCCCTTCCTCTGCCCGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCCCGACCACCACCTCGACGCCGATTAA

mRNA sequence

ATGGAGATTCCCAGGAAAGTAGCGAAGTTCAGATTCCACATTGTAGCAGCCCTAATCCTATCCCTAATTCTCTTCTCCCTCCTCCTCCTCGCCCCCAAATTCCTCTCCCTCCTCGCCTTCTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTTCTCGCCGTCCTCCTCTTCACCAACACCTCCCTTCCTCTGCCCGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCCCGACCACCACCTCGACGCCGATTAA

Coding sequence (CDS)

ATGGAGATTCCCAGGAAAGTAGCGAAGTTCAGATTCCACATTGTAGCAGCCCTAATCCTATCCCTAATTCTCTTCTCCCTCCTCCTCCTCGCCCCCAAATTCCTCTCCCTCCTCGCCTTCTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTTCTCGCCGTCCTCCTCTTCACCAACACCTCCCTTCCTCTGCCCGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCCCGACCACCACCTCGACGCCGATTAA

Protein sequence

MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTNTSLPLPDKAAEGLLNYVAGHPDHHLDAD

Homology

[Close]

BLAST of Carg26822 vs. NCBI nr
Match: KAG6577526.1 (hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015588.1 hypothetical protein SDJN02_23224, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 8.0e-36
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN
Sbjct: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDAD 89
          TSLPLPDKAAEGLLNYVAGHPDHHLDAD
Sbjct: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDAD 88

[Close]

BLAST of Carg26822 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_010324 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 5.4e-24
Identity = 70/87 (80.46%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP KV KFRFHI+  LILSL LFSL LLAP FLSLLA+FWPL LSTALFLLAVLLF N
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 88
          TSLP PDKAAEGLL+YVAGH  H LD+
Sbjct: 61 TSLPSPDKAAEGLLSYVAGH--HDLDS 85

[Close]

BLAST of Carg26822 vs. NCBI nr
Match: KAG7028299.1 (hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 67/87 (77.01%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP KV KFRFH +AAL L L LFSL+LLAP+ LSL+A+FWPLLLSTALFLLAVLLF N
Sbjct: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 88
           SLP PDK  EGLLNYVAGH D  LDA
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD--LDA 85

[Close]

BLAST of Carg26822 vs. NCBI nr
Match: KAG6596766.1 (hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-21
Identity = 66/87 (75.86%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP KV +FRFH +AAL L L LFSL+LLAP+ LSL+A+FWPLLLSTALFLLAVLLF N
Sbjct: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 88
           SLP PDK  EGLLNYVAGH D  LDA
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD--LDA 85

[Close]

BLAST of Carg26822 vs. NCBI nr
Match: XP_031404551.1 (uncharacterized protein LOC116213666 [Punica granatum] >OWM85804.1 hypothetical protein CDL15_Pgr012054 [Punica granatum] >PKI77517.1 hypothetical protein CRG98_002123 [Punica granatum])

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          M IP  + K+R HI+ A+ILSL L  L+LLAP+F++LLA+FWPL LSTALFL+AV+ F  
Sbjct: 1  MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPD 83
          TS P PDKA EGLL+YVAG PD
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82

[Close]

BLAST of Carg26822 vs. ExPASy TrEMBL
Match: A0A0A0L7E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.6e-24
Identity = 70/87 (80.46%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP KV KFRFHI+  LILSL LFSL LLAP FLSLLA+FWPL LSTALFLLAVLLF N
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 88
          TSLP PDKAAEGLL+YVAGH  H LD+
Sbjct: 61 TSLPSPDKAAEGLLSYVAGH--HDLDS 85

[Close]

BLAST of Carg26822 vs. ExPASy TrEMBL
Match: A0A218XLN4 (uncharacterized protein LOC116213666 OS=Punica granatum OX=22663 GN=LOC116213666 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.9e-17
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          M IP  + K+R HI+ A+ILSL L  L+LLAP+F++LLA+FWPL LSTALFL+AV+ F  
Sbjct: 1  MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPD 83
          TS P PDKA EGLL+YVAG PD
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82

[Close]

BLAST of Carg26822 vs. ExPASy TrEMBL
Match: M5WI68 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.0e-17
Identity = 49/87 (56.32%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP K+ KF+FH + ALIL L L+++ L+AP+FL++LA+FWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 88
          T+LP+ + + EGLL+YVAG P+H +++
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEHVVES 87

[Close]

BLAST of Carg26822 vs. ExPASy TrEMBL
Match: A0A314XNV4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_25186 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.0e-17
Identity = 49/87 (56.32%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP K+ KF+FH + ALIL L L+++ L+AP+FL++LA+FWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 88
          T+LP+ + + EGLL+YVAG P+H +++
Sbjct: 61 TTLPVTEPSGEGLLDYVAGQPEHVVES 87

[Close]

BLAST of Carg26822 vs. ExPASy TrEMBL
Match: A0A5E4FSR9 (PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.0e-17
Identity = 49/87 (56.32%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
          MEIP K+ KF+FH + ALIL L L+++ L+AP+FL++LA+FWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 88
          T+LP+ + + EGLL+YVAG P+H +++
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEHVVES 87

[Close]

BLAST of Carg26822 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-10
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 1   MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
           ME   K+ KF+  IV A +LSL+  +L+  +P FL++L++FWPL LSTALFL AV  F  
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  TS-LPLPDK-----------AAEGLLNYVAG--HPDHHLDA 88
           TS LP+              AAEG+L+YV G  H D   D+
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDS 101

[Close]

BLAST of Carg26822 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-09
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 1   MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
           MEI  K+ ++RFH +  +++S+I+ SL+  AP+ L++LA+FWPL  STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  TSLPLPDKAAEGLLNYVAGHPD 83
                 +   E L++YVAG P+
Sbjct: 182 FQQLSEEATGERLMDYVAGRPE 203

The following BLAST results are available for this feature:

BLAST of Carg26822 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577526.1	8.0e-36	100.00	hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56016.1	5.4e-24	80.46	hypothetical protein Csa_010324 [Cucumis sativus]	[more]
KAG7028299.1	1.1e-21	77.01	hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596766.1	2.5e-21	75.86	hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_031404551.1	1.4e-16	64.63	uncharacterized protein LOC116213666 [Punica granatum] >OWM85804.1 hypothetical ...	[more]

BLAST of Carg26822 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26822 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9	2.6e-24	80.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
A0A218XLN4	6.9e-17	64.63	uncharacterized protein LOC116213666 OS=Punica granatum OX=22663 GN=LOC116213666...	[more]
M5WI68	9.0e-17	56.32	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]
A0A314XNV4	9.0e-17	56.32	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_251...	[more]
A0A5E4FSR9	9.0e-17	56.32	PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1	[more]

BLAST of Carg26822 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13175.1	6.1e-10	44.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G16400.1	4.0e-09	40.24	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR34125:SF4	PROTEIN, PUTATIVE-RELATED	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26822-RA	Carg26822-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane