Carg26780 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26780
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Auxin responsive SAUR protein
Location	Carg_Chr15: 6696450 .. 6698600 (-)
RNA-Seq Expression	Carg26780
Synteny	Carg26780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTGGCGGCAGTGGCGGCGGTGGCGACAAGCATCAGCACCTCCTGCATCTGAATTTCCATTTCCATATTCATTTGCCTCACTTTCACCACCATCATCATCGGAACAAGGTGGAGACTCCCAAGGGGTGTTTGGCAATTCTCGTCGGCCAACAGCAAGAGCGGTTCGTGATTCCTGTCATTTATGTTAACCATCCTTTGTTCGCTCGGCTCTTGAAGGAGGCCGAAGACGAGTATGGCTTCGACCAGAAAGGACCTATCGCCATCCCTTGCCCTGTCGACGACTTCCGTACTCTCCAGGGCATAATTCATCACGATCATCACCCCCATCATCTTCTTCCCATCTCCTGTTTTAGGGATTCGTCTCATCCCCATTGCTGATATTGATGAATACCGACCTTAGTTCTTAGTTTTGGGTCCTCTTCGTTTGTTTGTTAATTTTCTGATACACATAACCAATAGCAATTCATGCGTTACCATTGCTTTCTGGAAGTGGAATTGGAATTTCCTCTGTTTATACATTCAAATTATTGTCACTGTCAACATGGTCTAGCTTGCCATTGAATGTTGTATCATATACGAGCTTCTTCAGCCTCAATCATGATGATTAATCTCTGTTTCTTCCTAGTTAAAATTCAAATAACGTAATCAAAACTGTCTGAAATTGATTCTCGGAAGGATATTTGACCATTGGAACTCTTTTATCTTTCTAAATTGGCCCGTTTGACTTCAAAAAATGAGGGATCTCTATCCCATGGGAAAAGGGGTGGGTGGAGATTGCTTTGCTTGTAAGGATGTAATAACTTTTTATTATTCTTTCTGGCAATGACACCTACAGCTTTGCTGACGCGTTTTTCTGTGTATACTAAATCCTCCCTTGAATAACGCTAAGTCAAATTCTCTTTAGAACATTATTATGCTTCTTCCACTTACAGTATGTATTGCATTACAGTCTTGCAGATGCCATCATTGACTTCCCAATTATGACCATCCATAGCCCACATGGAATGGACGACATCAGCTCACCCCACCTCAACCCCATCAGTATTCTTACTTTCCTGTTTCCCTTCATTGCTTTTCTTTTATTCATATATTCATTACGTTTGGAAGTAACTCGATATGTCAAGACTAAACCCATATGTTTACAGAAAAACATAAAAAAGAAACAGAATGAAGAATTCTAAAATCTTGAAAACTATATCTTCAAACGTTTATTTCAATTGAGCACTTAAGTTTGGGAGAATGAAAGAACATAATATAGCATATCAGTTTGGCAAGTCTCAGTAAAATCTGTATTCTGATCTCTGCCTTGTTTTTACATGTAGGAAGGATTATAAAGAACTGGGCGGTGAAATGGGAAAGAATGCAATACATGGTACATCCTCGTTTCTTTTTATGTTTCTCAATCGCATGGCCCTCTTTTATTCAGTGTTTTGAAGCTGCTAGGAATCAAATTGATAATACAATAAGGAGGAAAAATGAATCAAGTGTACAGCTATTGAACTATCTGCTTCTTCTGTGTGTTAATGTCTTGTATTAGAGTAGCGGATTGTAACACCATGTAGAAATCTTGTATATCCGAAAAAACTGAGTTTCCCATCAGAACTTCTTGTCCAATTCTGGAGAAAAGAATGAGCTATAGGACCCAGATTCATTTCCTGAACACATTTTAAACTTGCACTTCAATTCACTGTTGTTAGTTGTGTAAAATGTAGTAATTCCAAGCGTCGAATTGTTTCTTACCTGAACTAACTCATGTACTGAAATGACTCGATTTCCATCCTGCTCGAAATACTCGAAAGCTCGGGTGGCGATGCTTTCCCATCCTGCTACAGCCTCCAGCTGATATACACTGATTGCAGCTGCGCAGAACTCCTCAAAGCCCATTCTTTTGTTAGCGAGAGGTTCCATCTAAATACAAGTTGGAAATGTTAGTGAAAAAGAATATCAACCACGGCCGGAGAGCATTATGCCAAAGTTGCAGAGAATGTAACTTGATTTTGGTATATGCATAAAAGGTGTAACAACCAAGCCCACTGCTAGCAGGTATTGTCATCTTTGGACTTCCCTTTATAGGGAGAGGTTTCCACACCCTTATAAAGGGTATTTCGTTCTCCTCCCCAATCGACGTGGATCTAACAATCCACC

mRNA sequence

ATGGGGTTTGGCGGCAGTGGCGGCGGTGGCGACAAGCATCAGCACCTCCTGCATCTGAATTTCCATTTCCATATTCATTTGCCTCACTTTCACCACCATCATCATCGGAACAAGGTGGAGACTCCCAAGGGGTGTTTGGCAATTCTCGTCGGCCAACAGCAAGAGCGGTTCGTGATTCCTGTCATTTATGTTAACCATCCTTTGTTCGCTCGGCTCTTGAAGGAGGCCGAAGACGAGTATGGCTTCGACCAGAAAGGACCTATCGCCATCCCTTGCCCTGTCGACGACTTCCGTACTCTCCAGGGCATAATTCATCACGATCATCACCCCCATCATCTTCTTCCCATCTCCTGTTTTAGGGATTCGAAGGATTATAAAGAACTGGGCGGTGAAATGGGAAAGAATGCAATACATGGTACATCCTCGTTTCTTTTTATGTTTCTCAATCGCATGGCCCTCTTTTATTCAGTGTTTTGAAGCTGCTAGGAATCAAATTGATAATACAATAAGGAGGAAAAATGAATCAAGTGTACAGCTATTGAACTATCTGCTTCTTCTGTGTGTTAATGTCTTGTATTAGAGTAGCGGATTGTAACACCATGTAGAAATCTTGTATATCCGAAAAAACTGAGTTTCCCATCAGAACTTCTTGTCCAATTCTGGAGAAAAGAATGAGCTATAGGACCCAGATTCATTTCCTGAACACATTTTAAACTTGCACTTCAATTCACTGTTGTTAGTTGTGTAAAATGTAGTAATTCCAAGCGTCGAATTGTTTCTTACCTGAACTAACTCATGTACTGAAATGACTCGATTTCCATCCTGCTCGAAATACTCGAAAGCTCGGGTGGCGATGCTTTCCCATCCTGCTACAGCCTCCAGCTGATATACACTGATTGCAGCTGCGCAGAACTCCTCAAAGCCCATTCTTTTGTTAGCGAGAGGTTCCATCTAAATACAAGTTGGAAATGTTAGTGAAAAAGAATATCAACCACGGCCGGAGAGCATTATGCCAAAGTTGCAGAGAATGTAACTTGATTTTGGTATATGCATAAAAGGTGTAACAACCAAGCCCACTGCTAGCAGGTATTGTCATCTTTGGACTTCCCTTTATAGGGAGAGGTTTCCACACCCTTATAAAGGGTATTTCGTTCTCCTCCCCAATCGACGTGGATCTAACAATCCACC

Coding sequence (CDS)

ATGGGGTTTGGCGGCAGTGGCGGCGGTGGCGACAAGCATCAGCACCTCCTGCATCTGAATTTCCATTTCCATATTCATTTGCCTCACTTTCACCACCATCATCATCGGAACAAGGTGGAGACTCCCAAGGGGTGTTTGGCAATTCTCGTCGGCCAACAGCAAGAGCGGTTCGTGATTCCTGTCATTTATGTTAACCATCCTTTGTTCGCTCGGCTCTTGAAGGAGGCCGAAGACGAGTATGGCTTCGACCAGAAAGGACCTATCGCCATCCCTTGCCCTGTCGACGACTTCCGTACTCTCCAGGGCATAATTCATCACGATCATCACCCCCATCATCTTCTTCCCATCTCCTGTTTTAGGGATTCGAAGGATTATAAAGAACTGGGCGGTGAAATGGGAAAGAATGCAATACATGGTACATCCTCGTTTCTTTTTATGTTTCTCAATCGCATGGCCCTCTTTTATTCAGTGTTTTGA

Protein sequence

MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPVIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRDSKDYKELGGEMGKNAIHGTSSFLFMFLNRMALFYSVF

Homology

[Close]

BLAST of Carg26780 vs. NCBI nr
Match: KAG7016800.1 (Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 338.2 bits (866), Expect = 3.8e-89
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIP 60
           MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIP
Sbjct: 1   MGFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIP 60

Query: 61  VIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFR 120
           VIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFR
Sbjct: 61  VIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFR 120

Query: 121 DSKDYKELGGEMGKNAIHGTSSFLFMFLNRMALFYSVF 159
           DSKDYKELGGEMGKNAIHGTSSFLFMFLNRMALFYSVF
Sbjct: 121 DSKDYKELGGEMGKNAIHGTSSFLFMFLNRMALFYSVF 158

[Close]

BLAST of Carg26780 vs. NCBI nr
Match: XP_023549648.1 (auxin-responsive protein SAUR32 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 2   GFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPV 61
           G GG GGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPV
Sbjct: 5   GGGGGGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPV 64

Query: 62  IYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRD 121
           IYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRD
Sbjct: 65  IYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRD 124

Query: 122 S 123
           S
Sbjct: 125 S 125

[Close]

BLAST of Carg26780 vs. NCBI nr
Match: XP_022974339.1 (auxin-responsive protein SAUR32-like [Cucurbita maxima])

HSP 1 Score: 258.8 bits (660), Expect = 3.0e-65
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 2   GFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPV 61
           G GG GGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPV
Sbjct: 5   GGGGGGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPV 64

Query: 62  IYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRD 121
           IYVNHPLFA+LLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRD
Sbjct: 65  IYVNHPLFAQLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRD 124

Query: 122 S 123
           S
Sbjct: 125 S 125

[Close]

BLAST of Carg26780 vs. NCBI nr
Match: KGN49830.1 (hypothetical protein Csa_000428 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 7.1e-51
Identity = 99/118 (83.90%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 7   GGGGDK--HQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPVIYV 66
           G GGDK  HQHLLHLNFHFH+H PHF  +HHRNKVETPKGCLAILVGQ+Q+RF IPVIYV
Sbjct: 2   GFGGDKHHHQHLLHLNFHFHVHFPHF--YHHRNKVETPKGCLAILVGQEQQRFFIPVIYV 61

Query: 67  NHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRDS 123
           NHPLF +LLK+AEDEYGFDQKGPI+IPCPVDDFRTLQGII+HDHH HH LP+SCFRDS
Sbjct: 62  NHPLFVQLLKKAEDEYGFDQKGPISIPCPVDDFRTLQGIIYHDHHHHH-LPVSCFRDS 116

[Close]

BLAST of Carg26780 vs. NCBI nr
Match: KAG6605808.1 (Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.0 bits (458), Expect = 7.9e-42
Identity = 88/111 (79.28%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 12  KHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPVIYVNHPLFAR 71
           KHQHL  LN  FH+HLPHF   HHR+K +TPKGCLA+LVGQ+QERFVIPVIYVNHPLF +
Sbjct: 2   KHQHLPPLN--FHLHLPHF---HHRSKPDTPKGCLAVLVGQEQERFVIPVIYVNHPLFVQ 61

Query: 72  LLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRDS 123
           LLK+AEDEYGFDQKGPI+IPCPVDDFRTLQGIIHHD   HH L ISCFR S
Sbjct: 62  LLKDAEDEYGFDQKGPISIPCPVDDFRTLQGIIHHDSFIHH-LHISCFRPS 106

[Close]

BLAST of Carg26780 vs. ExPASy Swiss-Prot
Match: Q9ZUZ3 (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-22
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 40  ETPKGCLAILVGQQ---QERFVIPVIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDD 99
           + PKGCLAI VG Q   Q+RF++PV+Y NHPLF +LLKEAEDEYGFDQKG I IPC V++
Sbjct: 23  DVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVEE 82

Query: 100 FRTLQGII-----------HHDHHP-----HHLLPISCFR 121
           FR +Q +I           HH  H      HHL  + CFR
Sbjct: 83  FRYVQALIDGERSVYNGNNHHHRHGGRDQYHHL--VGCFR 120

[Close]

BLAST of Carg26780 vs. ExPASy Swiss-Prot
Match: O22150 (Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 35  HRNKVETPKGCLAILVGQQQ---ERFVIPVIYVNHPLFARLLKEAEDEYGFDQKGPIAIP 94
           H+     P+G LAI VGQ+     R ++P++Y NHPLF  LL+EAE EYGF  +G I IP
Sbjct: 73  HKKADPVPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGELLREAEKEYGFCHEGGITIP 132

Query: 95  CPVDDFRTLQ 102
           C   DF  ++
Sbjct: 133 CLYSDFERVK 142

[Close]

BLAST of Carg26780 vs. ExPASy Swiss-Prot
Match: P33080 (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 39  VETPKGCLAILVGQQQERFVIPVIYVNHPLFARLLKEAEDEYGFDQ-KGPIAIPCPVDDF 98
           VE PKG L + VG +  RF+IPV Y+N P F  LL +AE+E+G+D   G + IPC  D+F
Sbjct: 23  VEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEF 82

Query: 99  RTL 101
            T+
Sbjct: 83  LTV 85

[Close]

BLAST of Carg26780 vs. ExPASy Swiss-Prot
Match: P33082 (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 37  NKVETPKGCLAILVGQQQERFVIPVIYVNHPLFARLLKEAEDEYGFDQ-KGPIAIPCPVD 96
           N V+ PKG LA+ VG++ +RFVIPV Y+N P F  LL +AE+E+G+D   G + IPC  +
Sbjct: 13  NAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEE 72

Query: 97  DFRTL 101
            F+ +
Sbjct: 73  VFQRI 77

[Close]

BLAST of Carg26780 vs. ExPASy Swiss-Prot
Match: P33081 (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-11
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 40  ETPKGCLAILVGQQQERFVIPVIYVNHPLFARLLKEAEDEYGFDQ-KGPIAIPCPVDDFR 99
           + PKG LA+ VG++ +RFVIPV Y+N P F  LL +AE+E+G+D   G + IPC  D F+
Sbjct: 16  DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQ 75

Query: 100 TLQGIIH 106
            +   ++
Sbjct: 76  CITSCLN 82

[Close]

BLAST of Carg26780 vs. ExPASy TrEMBL
Match: A0A6J1IHB8 (auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111472971 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 2   GFGGSGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPV 61
           G GG GGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPV
Sbjct: 5   GGGGGGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPV 64

Query: 62  IYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRD 121
           IYVNHPLFA+LLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRD
Sbjct: 65  IYVNHPLFAQLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRD 124

Query: 122 S 123
           S
Sbjct: 125 S 125

[Close]

BLAST of Carg26780 vs. ExPASy TrEMBL
Match: A0A0A0KJC7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139100 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.4e-51
Identity = 99/118 (83.90%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 7   GGGGDK--HQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQQQERFVIPVIYV 66
           G GGDK  HQHLLHLNFHFH+H PHF  +HHRNKVETPKGCLAILVGQ+Q+RF IPVIYV
Sbjct: 2   GFGGDKHHHQHLLHLNFHFHVHFPHF--YHHRNKVETPKGCLAILVGQEQQRFFIPVIYV 61

Query: 67  NHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIHHDHHPHHLLPISCFRDS 123
           NHPLF +LLK+AEDEYGFDQKGPI+IPCPVDDFRTLQGII+HDHH HH LP+SCFRDS
Sbjct: 62  NHPLFVQLLKKAEDEYGFDQKGPISIPCPVDDFRTLQGIIYHDHHHHH-LPVSCFRDS 116

[Close]

BLAST of Carg26780 vs. ExPASy TrEMBL
Match: A0A2P5DFD6 (Small auxin-up RNA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_068350 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 76/124 (61.29%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 6   SGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNK----VETPKGCLAILVG---QQQERFV 65
           SG   +KH    H+NFH HI   HFHHHH +NK     + PKGCLA++VG   +Q++RFV
Sbjct: 4   SGEKLEKHNQQQHMNFHLHIPHIHFHHHHEKNKEVIMKDIPKGCLAVMVGEAEEQRQRFV 63

Query: 66  IPVIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGII----------HHDH 113
           IPVIY+NHPLF +LLKEAE+EYGFDQKGPIAIPC VD FRT+QGII          H DH
Sbjct: 64  IPVIYINHPLFMQLLKEAEEEYGFDQKGPIAIPCHVDQFRTVQGIIDKETSLHQHQHDDH 123

[Close]

BLAST of Carg26780 vs. ExPASy TrEMBL
Match: A0A2P5E6P5 (Small auxin-up RNA OS=Trema orientale OX=63057 GN=TorRG33x02_229440 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-33
Identity = 79/143 (55.24%), Postives = 91/143 (63.64%), Query Frame = 0


Query: 6   SGGGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVE---------TPKGCLAILVG---QQ 65
           SG   +KH    H+NFH HI   HFHHHHH +  E          PKGCLA++VG   +Q
Sbjct: 4   SGEKLEKHNQQQHMNFHLHIPHIHFHHHHHHHNDEKNKEVIVKDIPKGCLAVMVGEAEEQ 63

Query: 66  QERFVIPVIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGII--------- 121
           ++RFVIPVIY+NHPLF +LLKEAE+EYGFDQKGPIAIPC VD FRT+QGII         
Sbjct: 64  RQRFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPIAIPCHVDQFRTVQGIIDKETSLHQH 123

[Close]

BLAST of Carg26780 vs. ExPASy TrEMBL
Match: A0A6J1AA25 (auxin-responsive protein SAUR32 OS=Herrania umbratica OX=108875 GN=LOC110416336 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.7e-32
Identity = 76/123 (61.79%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 8   GGGDKHQHLLHLNFHFHI-HLPHFHHHHHRNKVETPKGCLAILVGQ--QQERFVIPVIYV 67
           G GDKH    H+NFH H  HL  FHHH  ++  + PKGCLAILVGQ  +Q+RFVIPVIY+
Sbjct: 2   GSGDKH----HVNFHLHTPHLHSFHHHEKKDLNDIPKGCLAILVGQGEEQQRFVIPVIYI 61

Query: 68  NHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGII-------HHDHHPHHLLPIS 121
           NHPLF +LLKEAE+EYGFDQKGPI IPC V++FR +QG I       HH HH HH   I 
Sbjct: 62  NHPLFMQLLKEAEEEYGFDQKGPITIPCHVEEFRNVQGKIDKDQHQHHHHHHHHHHHHIW 120

[Close]

BLAST of Carg26780 vs. TAIR 10
Match: AT4G00880.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-28
Identity = 66/129 (51.16%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 8   GGGDKHQHLLHLNFHFHIHLPHFHHHHHRNKVETPKGCLAILVGQ--QQERFVIPVIYVN 67
           G GDK      +  H+  H+P  HHH H ++ + PKGCLA+ VGQ  +QERFVIPV+Y N
Sbjct: 2   GNGDK------VMSHWSFHIPRLHHHEHDHE-KVPKGCLAVKVGQGEEQERFVIPVMYFN 61

Query: 68  HPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGII--------------HHDHHPH 121
           HPLF +LLKEAE+E+GF QKG I IPC V++FR +QG+I              HH HH +
Sbjct: 62  HPLFGQLLKEAEEEFGFAQKGTITIPCHVEEFRYVQGLIDRENTRFLGTNLLDHHHHHHN 121

[Close]

BLAST of Carg26780 vs. TAIR 10
Match: AT5G53590.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 117.5 bits (293), Expect = 9.9e-27
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 0


Query: 15  HLLHLNFHFHIHLPHFH---HHHHRNKVETPKGCLAILVGQQQE-----RFVIPVIYVNH 74
           H+ H+ F FH H+PH H   HHHH +  + PKGC+AI+VG + +     RFV+P+++++H
Sbjct: 17  HIKHMVFKFHFHVPHLHILPHHHHHHHHDVPKGCVAIMVGHEDDEEGLHRFVVPLVFLSH 76

Query: 75  PLFARLLKEAEDEYGFDQKGPIAIPCPVDDFRTLQGIIH-------------HDHHPHHL 120
           PLF  LLKEAE EYGF   GPI IPC VD+F+ +Q +I              H++H HH 
Sbjct: 77  PLFLDLLKEAEKEYGFKHDGPITIPCGVDEFKHVQEVIDEETHRRHSHGGHGHNNHNHHN 136

[Close]

BLAST of Carg26780 vs. TAIR 10
Match: AT2G46690.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-23
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 40  ETPKGCLAILVGQQ---QERFVIPVIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDD 99
           + PKGCLAI VG Q   Q+RF++PV+Y NHPLF +LLKEAEDEYGFDQKG I IPC V++
Sbjct: 23  DVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVEE 82

Query: 100 FRTLQGII-----------HHDHHP-----HHLLPISCFR 121
           FR +Q +I           HH  H      HHL  + CFR
Sbjct: 83  FRYVQALIDGERSVYNGNNHHHRHGGRDQYHHL--VGCFR 120

[Close]

BLAST of Carg26780 vs. TAIR 10
Match: AT3G61900.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-20
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 40  ETPKGCLAILVGQQQE---RFVIPVIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDD 99
           + PKGCLAI VG ++E   RFV+PV Y NHPLF +LL+EAE+EYGF+QKG I IPC V+ 
Sbjct: 29  DVPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVEV 88

Query: 100 FRTLQGIIHHD 108
           FR +Q +I+ +
Sbjct: 89  FRYVQDMINRE 99

[Close]

BLAST of Carg26780 vs. TAIR 10
Match: AT3G60690.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-15
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 42  PKGCLAILVGQQQ---ERFVIPVIYVNHPLFARLLKEAEDEYGFDQKGPIAIPCPVDDFR 101
           PKG  A+ +G++    +R ++P++Y NHPLF  LL+EAE+E+GF Q+G I IPCP  DF+
Sbjct: 89  PKGHSAVYIGKKDGDFQRVLVPIVYFNHPLFGELLREAEEEFGFSQEGGITIPCPYSDFK 148

The following BLAST results are available for this feature:

BLAST of Carg26780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016800.1	3.8e-89	100.00	Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_023549648.1	1.0e-65	98.35	auxin-responsive protein SAUR32 [Cucurbita pepo subsp. pepo]	[more]
XP_022974339.1	3.0e-65	97.52	auxin-responsive protein SAUR32-like [Cucurbita maxima]	[more]
KGN49830.1	7.1e-51	83.90	hypothetical protein Csa_000428 [Cucumis sativus]	[more]
KAG6605808.1	7.9e-42	79.28	Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg26780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUZ3	1.4e-22	54.00	Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S...	[more]
O22150	1.4e-12	47.14	Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 S...	[more]
P33080	1.1e-11	49.21	Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1	[more]
P33082	1.1e-11	47.69	Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P33081	3.3e-11	44.78	Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Carg26780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHB8	1.4e-65	97.52	auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111472971...	[more]
A0A0A0KJC7	3.4e-51	83.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139100 PE=3 SV=1	[more]
A0A2P5DFD6	3.2e-33	61.29	Small auxin-up RNA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_068350 PE=3 SV...	[more]
A0A2P5E6P5	9.4e-33	55.24	Small auxin-up RNA OS=Trema orientale OX=63057 GN=TorRG33x02_229440 PE=3 SV=1	[more]
A0A6J1AA25	4.7e-32	61.79	auxin-responsive protein SAUR32 OS=Herrania umbratica OX=108875 GN=LOC110416336 ...	[more]

BLAST of Carg26780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00880.1	2.4e-28	51.16	SAUR-like auxin-responsive protein family	[more]
AT5G53590.1	9.9e-27	44.44	SAUR-like auxin-responsive protein family	[more]
AT2G46690.1	1.0e-23	54.00	SAUR-like auxin-responsive protein family	[more]
AT3G61900.1	5.3e-20	59.15	SAUR-like auxin-responsive protein family	[more]
AT3G60690.1	5.1e-15	49.21	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 36..100 e-value: 1.3E-21 score: 76.6
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 18..112
None	No IPR available	PANTHER	PTHR31374:SF15	SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN	coord: 18..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26780-RA	Carg26780-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin