Carg26726 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26726
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	la-related protein 6B-like
Location	Carg_Chr14: 7939806 .. 7949786 (+)
RNA-Seq Expression	Carg26726
Synteny	Carg26726

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAACATTCTTCCTCCTCTTCCCTTTCCCCTTCCCAATCCGATCCATCTCTATCTCGCAACTCTTCTCTCAGTCGTCTCAACGCGCAGGCTCCTGAGTTCGTTCCCACTCGCCCATCCTCTCGTTCCGATCTACAACAGCCGCCGCACTCCGCCGCTGGCCCTGCTCCTCCTCCGCCCAAGCAATCGCCTCGGATTCTGATCCCTTCTCCTCCGCCTCCTCCGCCGGCTATGATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTCCCTGTCCCCACTCATGTGGTTTCTCTTCAGAATCATCACTATCATCGTCATCATCGTCACCATCGTCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGACAATGGCGGATTTCATGACCCGGACACGGTCGTGCAGCAAGCTCAGAAGCCTCAGGTTGAGACTGATTATGCTGCTCCATCTAGAAGTAAACTCGCTGAGGACGTTTCTTTAAAGCTTTTGAATCAGGTTGCTTTCTTCTTTTGACTAGATCCTCTATGTTTATTCTCTTCTCTCTATGTCAACAGTTTGTTATCTGCTTGCTTCTTCAATAATTACTTTGGTATGAAGCTGAGTTTCATATTCATCTGTCGAATTTGTATGGATTTGCTGCGTGGGTTAATTTATGAAGAACCGTAACTTATGGAGCTATTGTGTTTTGATCCAGCGAATTCTGTTGTTTCTTTAGGCACACATTGAGTTAGCTGGAAGTCATGGTTACTTGAAAGGTCTTAGAACTCGCTGGGAATTTTGTTCTGGATTCCCCTTTCCTGTTGTACGAATATTGTCGATATCTGCAAAATTTCTGTTTGCTTGAGACTGTTGATAAATGGTAAACTAGGCATAGCTAAATATGATGGTCAAAAAAATTGGAAACCAACTATTTATTGCATACGACATTGAACAGACACAAAAGGTTCATTGGTCCTCATGTGCACCGAGCATGGACAATTCCCGTTCGATCAATTTTAGTAGGATAGGAGCTGTGGAGACTCTCTCATGTCCAAAGTGTTGCTGTTGGACGTGTATGCATTGATACACTTCAAACCCATGTCTACATGTGATTTGGAGCAGGTTTTTCATTTTTTTTTGTTAACTTGTCCAAATTTCAGACAATTTGGGACTCACAAGACGAATTGGTAGAGACATGTTGAGCACACTCTAGGCATGTGGGGGCATTTTGAGAAGAAAAAAAAAAGAAGAAATTATGTTTAAGGTGCTGGTGAAAACCTAGGTTTAGGAAAACTGTGTGGGGGACAGGACTTGGGGAATAGGTTTGGGACATCATTGAAGCCCATGAGTTTATCCAATAAACTCCAAGCTTGGCAAACTAACGTAGTAAACATGTCACCTGAATCTAAACCCTCACTCAAAACACATCCCTATTTACCCCCTAAATGACGATGGCATCTAGAATCCAAGATTATATAATTACTTAAATATGCTGATGTTTTGGAAGGCTCAATTGGTTTTTTGGGATGATAGTTAACATAATAATCACCATAACACACACTTTGGATCATTTATCTACTGAAGAAAACTATGTTGATAGCTGGAGGACGACTTTCCATTGAAGAATATCCATAAAACTAATTGTTTGGGGGCAAGTCACATGAAAGGTGATGTCATGAAAGGACACTTTAAAGCTGTCAGATGGATATTCACTCGGAAGTGAATATTCTACATTTATTATATAGCACTCAGAAGCGATGATTTGAGTAGGTACCTAATGACGTCTCTTCTGTTCCTATGACCTGACACTAAGTCAAAAAAATGGAAATGGAAGAGGGCTGTGGAACAATGGATAAAAGTACTTGGATATCCTTATTTTGAAGTTGCTTTAGTGGTGAACTGTCCTTTCTGTCTCAAGGTTATGATGTAATTCTTAAAACAAGGAGTTGCATCACTTATTTATCTTCTTAGTCTGGAGGTGCTGCTCCAATCGTTTGTATAACTGTGTGGATGTTGGTATCGTTGAAGATAATTAAACTACTGCCCTTCGTTACTGGCAAACTACTGCTTACATTTGGAAATTGATTAAAAATTATCTTCTTGTCATCAATAAATACCAAAGCAGCTAGTAATTGTCGTCTTAAGGATCTTGAAGCTGAAATTTTCCCAATCATAGTACTTGCTGTGTCAATAAAATCCAACATTTTGAGGTTTTTGTCATTCAGTCCCTGGCTTTTACTTCTGTTGTTATTGAAGTAAATTTATTTTGGAGGTTACTGATGATTGTCAATTTTAGTTAGTTGGATTATTCCTTAAAGCGTTTGGTGCTCACTATTCCTTCTCAGCAAAGATCAGTTTAAATATTGTGTTAGTTTTGGCATTTCTCTTTGATGACTTTGGAATCACAAATTTCAATGTTTGTGACCATCAGTTTAGGATATTACTTTTCTACGAGTATGCTTTGAAATTAGTAGAAAGGCATATAAGTTTGCAGGACATTTACAGTCGTTATTAATTAAAAAGTTGAATGGTTGATTTAGTAGGTTAGGTACTTCTGCTATGTTTTCCAATTTCCAATATGAATTGGATATTACTCTCTATGCCTACTTTTTATTTAACCTTATTTGCTTATTGAATTCTTTGTAAAATCATGGTTTTTAGGTGGAATATTATTTCAGTGATTTAAATTTGACAACAACTGATCATTTGATGAGGTTCATCAATAAAGATCCCGATGGATATGGTAAGATCCTCTCTTGGCATCTTTATTTGAATTCCGTTAATGTGTGGAACTCCTGCTTTTACCATCCCACCACAGGTGGATTCTTTTGATTAAATTTACAACATAATGAAAATTTAGAATGACCTCTTAGAATTAGACAACCGAACTTCTTTTTCTATCTCTCCCTCCAAAACACTTCACCTGGTAAGGTCCATTTTAATTCAGTGCCCATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATCAATAGTCACTCTCAGCTAGCCAATATTTTACGGAACTCTTCTAAGCTTGTGAGTATTTTATTTGTGATATTGTAAGCATCTTTCTTTACCATTGTTGTCCTTGAGTTATTCTCAATTCTCTTTCTGGTTGTCCACCTCCTGTTTTTTGTTTCAATATGCTGTAGATGGTTAGTGAAGATGGAAAGAAAGTCAAACGTAAGCAACCACTTTCTGAGTCAGATATGGAGGAGCTGCAAGTAGGGTTTGTTTATTTATTTTTTTTTATTTTTAAAATAACGTTTTAATCAATTTTGTAAAAGTAGTTATACGTATATATTTTATTTTTTAATAAAAATTTAAAACCTTGTGCATTGGTTCTGTTTCATGTTACAACATGTGGGATGGTTCCATCCCAGTGTCCACAATATGTTATTGACTTACAAACCAATGCATTTAATCCTTGCATGCTGCTTGTTTTACTTGCCCACTGTCAGTCTCGCATAGTAATTGCGGAGAACTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTTTCTGCTGTTGGGAGGTACAAGTGTTAAATGATTTTGTTTGCATGTTCTTCAGCAGCTTGCTAAAGTTATATTGAATTATCATGCTGCTTTCTTCTTTGGCAGTGTTAAGAATATTCGAACTTGTCAACCTCAAATCTCAGATAGTGGAGCTTCTTCAACGGCTAAATCAGCAAAAGCTGATGGAATGCATTACAGTAGCAAGGTATACTTATTTTCTGTAGCATACGGTATCTGAGCTTTTCTGGTGCAATCTTTTTTCTCCATTAACCTCTATCATTGTTGGGACAATGTATTATTTCCTTGAAGTCTGTTGTATGGGTTATCCAAAATCTCCACAAGGACGTGTTGCAAAATCAGGCGGGGAACGCTGGTTCAAACACATGAGAACTTGTTCCAAATCACGTGGGGAACCCCTGTTTGAAATGGGTTGAAGTAAATGAACAGGAGAAACTTTTTCCCCTATCTGATTTTCAGGAACAACCCCCCCCCCCCCCTTTGGCTTTCATTCAAAATTTTCTACTCAAATACGGGGGAGAGGTTGAGCCACAACACTGCCAACAATATTTGAGTTGCTCATCTAAAGAGCAGACTATGACGATATTCTTCTAATGAGGTTTCTAGTAGGTCTTGTATATAAGTGTTGTAGATTAAGATATCATCATAGAACATTGATGCAAACTGTCGTAAGTAAGTCTCTAAGATATCCTTCATTAGAGATAGAAAAGGAGAGGGAGCATTGTGCCAACCAAAAGGCATAAACAAAAATAGTTAGACTTGAGATCAATCTTAAACACTATAGCACCAAATAACTCATCAAGCAATTCATCCACTTCGGGAATAGGGTTCTTATTTGGGATAGTCGTATGGCTAAGTTTGTATTGCAACATATCTCATCAAATCTCTGTTTGATAAGAACCATTTCTTGCCTGTTCCACAAAAGATAAACCAACATCCTCCGTTATTTTCTCAATCTCTTTTCTTTGCCTGAACTACCATGGGGATTTTGATTCTACCCTCGATGATTCTTTCAAGTCATTTTTCAACCAATTCTGGAACTCCATCTCATAAAGCTAGAAATTTCTAAATCAAGATGAAGATGGTTCCTATATTAGGTTGCCAACTTCTAACATCCAAAAGGAATGGTTTATCGAAGACTTCGCCAACATATTCGGTTGTAAAAAGATTGAATGGCCAAATATGTTGTAATGCCCCATGCCCAGAATTCAGAATTCGAATTCAAATTCAAATTCGGCACCCGATGGCCCTAGCATTCCCTTGCATCACCAACGACATGGTCGCTCAACATAGAATTGCTCCAAGTAAAGCACACTGAACTATGAAGTTTCTATGATTGAGCCACTGAAAAGGAAGGTTCCCCTTGTTGGTATAGGTAGTAATTTTCATTTACTTTAAGACTTTCTTAGTCATTCTATTCTCAGGATTGCTCTCATTCGGATATGGTCTCAATTCATTCATGTACCCCTCTTTTACTCGAGTGTCAAATGCCTTGGTTTGTCCCCGAACCACATTTTATTGGGAGAGGTATCGCTCTGATACCATTTGTAATGCCCCATGCCCAAGATTCAAATCAGGATTTGGAATCTGGATTCGACATCTGATGGCCCTAACATTTCTTTACCATCGTTTGCGACATGGTCACGTTACCTACTCCTTGTTTCTTAAGAGTGAAGGTTACCTTATAGACCAATATGAGTCCTTCTAGCATGCTTTGTCCTCTCACACATGCATCCTAGGAACATTCTTAGAAATTCACCCCACGTAAAATTGCTCCAAGTAAAGCACGTTTATCTATGGAGTTCCTATGATTGAGCCACCAAAAAGGAAGGTGTACCTTGTTGGTATAGGTATAGGTAGTAACTTTCATTTCCTTTAAACCTTTCTTAATCATCCTATCTTCAGGGTCGCTCTTATTCGGATGAGGTCTTGGTTCATTCATCTACCCTTCCTTTACTCGAGTGTCACATATGTACCTAGGATTGCTCTTAAATGGGAATCATAAATCCTTCTCCTTCTGGAAGAACATTATTGAAAAAATAGAAAGAAGATTATCAACATGGTCATCATGTTATACTTCAAAAGGCAGAAAATCACCTTAATACAAGCCACACTATTCAACCTTCCCACTTGCTACATATCTCTATTCAAATTGCCTAGAAAAGTGGCTACAAAAATAGAAAAGATTATTCATAGATATATATAGAAAGATGACCTACGTCTTGTTTGATGGAATTCCATAAACCTCCCGATGAATAAAGGAGGCATTGGTCTATTTCCAATAAAGAGCACTAAAACATCATCACCAATTGTATTTGCCATAGAGTGGGTGCTGGGGGAAGCATAGTTGTAACGACCTGTTTTTCGATGCCTCGAATCATGGTCGCCACGTAGACTCAAGAGTAAAAAGGGCGATAAAATCTTTCAAATTGAAATGCTTGAGACAAGGAAAAGTTTTAATTTAAAAATGCATTAAAACTAACATAAGGTCAATTAAAAGTACAAAACAACGTACGTGGAGTTAGTCCAAAATAGTTTACATAAAATACACCAAAAACAACATTTAAAGATAATAAAATGACAAGAAAGGAAGACGACTCGATCTAAAGGCACCCTTGTAGCTGCACCACTTTGCACTCTTTTCCCCTCGACCGTGATCTCCACTCCTAAAAAAATAGAATAACATGGGATGAGTATAAAATACTCAGTAAGCAGCCAACTTTTAGGCTCTCGTTAGACTTAGTACTTACAATAATTCCTTAAGTATGTGCTCACATGTTGACTCTAGTGTTAACCATTACCATGGTTACCATCTATGCTAACCTTATAGGCTTATATGTACCGAGGCCATATACACTCCTACACTAGGGTGCATAACTAAGCCCCTCGGGTCATAATGTAGGGTTAGGTTGTACTCAACTTGTTGTTTATATCTCCCAAAGTCTACCCTTAACCTTGTGCTACTAGCACATGAGTCAACTTGCCCTATGGCGAGTTCGTGGGTAAGTCTCGTGTGTATGAGGTAATTTGTGCAATATATGCAGGCTAGTACTATAATTGCTTGCACCTCATACGAGCTATCTACAAGGTGCACCCTGGTAGCATGCTCTCTACAGCTCCTGGCATCCACTGTAGGTGACAACTAACCAATAGGTACCAAGTAGACCCTAACCATACTATGAAAGTTCACAATTGTTGGTTGTGCCCCAATTGTCCCTACTTGATTGTCTGGTCACCCGAGAATGCCAATGGGACCCAATGTGGGTTCTAAGACTAAAGGATGTGCACTAACCGTTCATAATCATGCATATTTATACCTATGCTCACTAGGACACATAACATATATCCAATAAAATATTCGGGCATACAAGGGTATGTAAAGGTTCCTAGGCTTAACTATAGACAACCTAATTAATTAGGTTTGTCGTCATGTTTTCTAATAAATATACATCTAGCTGAAATAGTCTCATTGTCATACTACCAAATAAGTATCTAACTTGATTAACTAGGTCTATCATCATGATTCCAATTGAGCATCCAACTTGATTAACTAAATTTATTAACATGCTTCCTAATGAATTTTGCCCATTGTCCTAATCGTCCCCTACAAGTATTACTTGAATAATCCATGTGGCTACTTGCATATTTGTTGTCTTCCCGAGCTTGTTTCAGGTCTTCAAGAGTTTCCAAATTTCTAAAAAGTCCTCAATTAGGTCCATCGGGTCGGGGTCCAGATGGCGGGTTGGAGTCAACTAGGTGGGTCTGGTTAAGTCCTTTAAATCGAGTCAGGTTGGTTTCGGGGGTCTCGGGCGATTGGATCACTAGGTGAGGCGGTTACTCGAGTTGGATCGAGTGGGTTGGGTCACTATACAGTTGGGTCACTCAGGTCGGTTTAGCCCAGCGGGTCAACTTCTTTCTTCTTCCTCCCCATAACTATCTTTCTCTGTTCTATGCGATTTGCAGAGGCAGCGTTCCTTCCTTCCTTTGCTTCAGCTCTCGCCCATCCATCTTCATCTTTTGTTGGAATCTCTCTCGTGGTGTTGCCTAGACTCCATACTTCCCTCATACTCCCTCTCTCTTGATTTAAACACAATGGCACCCCAAATCTGCTGAAATCAAGAAGGAAATTGGGTAGGTGGCTGACTTGTCTCCTTTGTCCGCTCTCTGCCCCCTCTGTGCATCCTTTTCACTTTGGAGGTCGCTGACCATAGTGTACGACCAGCGGCTCCATATCGTCCTTCCTTTCTTTTTTCCATTATATCTATATACAGTTGTCATCGCTTCCATCTTCATTTATTTCAGTTTTGTACTGACCCTTGGATTGAGAAACACTAGGCTAGCCTTGCAATATCCACTTATGTATAGACTCTCTCATGACAAAATGATCACGATCAAAGAAACATGGAAAGATGCCAACAAATTTTGGGACTTGAAGTTTGGGAGGAACTTAAAGATAATGAAGCTGTGGAATGGGCAGAGTTAAGCCTTGACCTAGCCCCAATTGTGTTGTCTAAAAAAGCAGAGTTAAGCCTTTTTTGTATTGTCTGAAAAAGCAGACTTATTAAAATGGCTTCCTAGCGCTGAAGTGGTCTTCTCTTTGGAATCTTTGATGAAGGACATAGGGGAAAAGGCAAAAGCAATCAACCCCACACTAGCAAAGACAATATGGAAAGGAAATCACCCTAAAAAGGTGAAGATTTTCTTATGGAAAATAGCGCATAAAGCTATTAGAGTAAGTGAAAACCTACCAAAAAAATAAAATAAAATAATAAATAATAATAATCATAATAATAATAATACTGTCCTACATGACTCTGTTCCCAAGTTGGTGCCTATTAGGTTAGAAAGACAATGAATCACAAAGCCATATATTTATGCTGCACATACCCATAATTTTTGGACAAGGATTCGCAATTTCTTTGGATGGTATCTCACTTTTCCCTACATAGGGTAAAAGAGCTATTGGACATGGCCTTAGCATATCATCCCCTCCATGAATGCTAACTTTTACGAAGAGTATTCATGGAGGAGGCAAACTTTTACGAAGTTTTTCTGCAACATTGTGTACCTTGCTATTTGTTGGTGTAAATTGTCAAATACTTTTGCTTCCTATAGTCACACCTCCCTCATCTGGTCTTTTGTATCCATCATGGATAGCACATCCCTTTTGTAAATTTCAAACATCGGATTAAAAAAAAAAAAAACTAGTTATGTAACCCTTAGTTCTTTGAAAATGATGGAGTTGGTCTCTCTCATATTTGATCAAGTAAAATATGAGAGATCGATTTAGTATACAATCTGCATATATTTTCATTGCCTAATCCCACAATGTTTTGATCTTCTTTTGGTTTTTGTCGCATCCCCCTGATTTTCATAGATGCTGGCAGTAAAATATATTTTCTGATGTTTGTAGATTAGCCTGTTTTATAGAATAACCGATGGGAAATTTTACTGTATAATCGATGCCTTATAAAATGTCCTATATCAATGGCCTTGTGAATAGCGATTAGTCATGGTACATTTGAGTAATATAACTTTTTTAGCCTTAAATAGGCTACTCAAACTACTGCTGAATATCAACGTCCATGACATTTTAAATTAACTACAATCTTTCTTATTCTTTATTCAAGGGAATAACATAATTCTCAACATTTTATGTTTCAGTTGCATGCATTCGTGGAATATGAATCAGTGGAGCTGGCGGAGAAGGCTGTAAGTGCTTTCAATTCCATTACGTATGAAAGTTTTTTCATTCTTGTAAAGGAGATTCAATGTAAAAGAAGTTGCATAATTTTTCAGGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTCAGGCTTCGTTTGATGCTTTCATGCCCGGTACTTAAACTAAGACTATACTTATTCCATGTATTTGATTTGGTTTCTGCTACATAGCTTAATATACTGTGTACTGTATTTCCTGTGTTTTATTGTGTGTTGCACGGGTTTTTTATATTCTCTTATTTGAACTTAAAAGACAGAACGGTGAGTTGCCTTCTTTACATGTTTAAGCATTTTTTTTTTATTTTATGTATACAAAAATTTATACTAGTTCCAAACCCTAAATTTGAAGCTTTGTTCTTGATTTATTTTCTTTCTTTGTTTTGTTTGTGCGTGTGTTTTAATTAAAAATTCATTGTTGTTCACAGTCAAAATCTTCTCTAGCTCGTGGAAAGAAGGGACATAGTGGTGAGATGAACTGCAAAGATGATGAAACCTCTGAACAACCACGTATTGAGAAGCATGTAGACGATCTTTCTGATCAAGTTGACATTCATCCGCATGAACAAGTACAAGTGAACTCCCTCTAAGCTTCTTTAGATTCCTGGAAGCTTTAAATTAATGCACTCTCTCTTTAATT

mRNA sequence

ATGGCTCAACATTCTTCCTCCTCTTCCCTTTCCCCTTCCCAATCCGATCCATCTCTATCTCGCAACTCTTCTCTCAGTCGTCTCAACGCGCAGGCTCCTGAGTTCGTTCCCACTCGCCCATCCTCTCGTTCCGATCTACAACAGCCGCCGCACTCCGCCGCTGGCCCTGCTCCTCCTCCGCCCAAGCAATCGCCTCGGATTCTGATCCCTTCTCCTCCGCCTCCTCCGCCGGCTATGATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTCCCTGTCCCCACTCATGTGGTTTCTCTTCAGAATCATCACTATCATCGTCATCATCGTCACCATCGTCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGACAATGGCGGATTTCATGACCCGGACACGGTCGTGCAGCAAGCTCAGAAGCCTCAGGTTGAGACTGATTATGCTGCTCCATCTAGAAGTAAACTCGCTGAGGACGTTTCTTTAAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGACAACAACTGATCATTTGATGAGGTTCATCAATAAAGATCCCGATGGATATGTGCCCATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATCAATAGTCACTCTCAGCTAGCCAATATTTTACGGAACTCTTCTAAGCTTATGGTTAGTGAAGATGGAAAGAAAGTCAAACGTAAGCAACCACTTTCTGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTAATTGCGGAGAACTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTTTCTGCTGTTGGGAGTGTTAAGAATATTCGAACTTGTCAACCTCAAATCTCAGATAGTGGAGCTTCTTCAACGGCTAAATCAGCAAAAGCTGATGGAATGCATTACAGTAGCAAGTTGCATGCATTCGTGGAATATGAATCAGTGGAGCTGGCGGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTCAGGCTTCGTTTGATGCTTTCATGCCCGTCAAAATCTTCTCTAGCTCGTGGAAAGAAGGGACATAGTGGTGAGATGAACTGCAAAGATGATGAAACCTCTGAACAACCACGTATTGAGAAGCATGTAGACGATCTTTCTGATCAAGTTGACATTCATCCGCATGAACAAGTACAAGTGAACTCCCTCTAAGCTTCTTTAGATTCCTGGAAGCTTTAAATTAATGCACTCTCTCTTTAATT

Coding sequence (CDS)

ATGGCTCAACATTCTTCCTCCTCTTCCCTTTCCCCTTCCCAATCCGATCCATCTCTATCTCGCAACTCTTCTCTCAGTCGTCTCAACGCGCAGGCTCCTGAGTTCGTTCCCACTCGCCCATCCTCTCGTTCCGATCTACAACAGCCGCCGCACTCCGCCGCTGGCCCTGCTCCTCCTCCGCCCAAGCAATCGCCTCGGATTCTGATCCCTTCTCCTCCGCCTCCTCCGCCGGCTATGATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGAGCCCTGTCCCTGTCCCCACTCATGTGGTTTCTCTTCAGAATCATCACTATCATCGTCATCATCGTCACCATCGTCACCACCATCATTCCCATCATGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCCGACAATGGCGGATTTCATGACCCGGACACGGTCGTGCAGCAAGCTCAGAAGCCTCAGGTTGAGACTGATTATGCTGCTCCATCTAGAAGTAAACTCGCTGAGGACGTTTCTTTAAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAATTTGACAACAACTGATCATTTGATGAGGTTCATCAATAAAGATCCCGATGGATATGTGCCCATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATCAATAGTCACTCTCAGCTAGCCAATATTTTACGGAACTCTTCTAAGCTTATGGTTAGTGAAGATGGAAAGAAAGTCAAACGTAAGCAACCACTTTCTGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTAATTGCGGAGAACTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTTTCTGCTGTTGGGAGTGTTAAGAATATTCGAACTTGTCAACCTCAAATCTCAGATAGTGGAGCTTCTTCAACGGCTAAATCAGCAAAAGCTGATGGAATGCATTACAGTAGCAAGTTGCATGCATTCGTGGAATATGAATCAGTGGAGCTGGCGGAGAAGGCTGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTCAGGCTTCGTTTGATGCTTTCATGCCCGTCAAAATCTTCTCTAGCTCGTGGAAAGAAGGGACATAGTGGTGAGATGAACTGCAAAGATGATGAAACCTCTGAACAACCACGTATTGAGAAGCATGTAGACGATCTTTCTGATCAAGTTGACATTCATCCGCATGAACAAGTACAAGTGAACTCCCTCTAA

Protein sequence

MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPPPKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRHHRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALRLRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQVQVNSL

Homology

[Close]

BLAST of Carg26726 vs. NCBI nr
Match: KAG7018168.1 (La-related protein 6B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 798.1 bits (2060), Expect = 3.6e-227
Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120
           PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120

Query: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180
           HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS
Sbjct: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
           LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR
Sbjct: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQVQVNS 420
           LRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQVQVNS
Sbjct: 361 LRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQVQVNS 420

Query: 421 L 422
           L
Sbjct: 421 L 421

[Close]

BLAST of Carg26726 vs. NCBI nr
Match: KAG6571819.1 (La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 770.4 bits (1988), Expect = 8.1e-219
Identity = 409/415 (98.55%), Postives = 411/415 (99.04%), Query Frame = 0


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120
           PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY   HRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY---HRH 120

Query: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180
           HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS
Sbjct: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
           LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR
Sbjct: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQ 416
           LRLMLSCPSKS+L+RGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIH HEQ
Sbjct: 361 LRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQ 412

[Close]

BLAST of Carg26726 vs. NCBI nr
Match: XP_022952369.1 (la-related protein 6B-like [Cucurbita moschata])

HSP 1 Score: 770.4 bits (1988), Expect = 8.1e-219
Identity = 409/415 (98.55%), Postives = 411/415 (99.04%), Query Frame = 0


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120
           PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY   HRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY---HRH 120

Query: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180
           HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS
Sbjct: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
           LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR
Sbjct: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQ 416
           LRLMLSCPSKS+L+RGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIH HEQ
Sbjct: 361 LRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQ 412

[Close]

BLAST of Carg26726 vs. NCBI nr
Match: XP_022971972.1 (la-related protein 6B-like [Cucurbita maxima])

HSP 1 Score: 769.2 bits (1985), Expect = 1.8e-218
Identity = 406/415 (97.83%), Postives = 410/415 (98.80%), Query Frame = 0


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQ PPHSAAGPAPPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQPPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120
           PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY   HRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY---HRH 120

Query: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180
           HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKL EDVS
Sbjct: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLTEDVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
           LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR
Sbjct: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASST+KSAKADGMHYSSKLHAFVEYESVELAEKAVAE+NDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTSKSAKADGMHYSSKLHAFVEYESVELAEKAVAEINDEGNWRNALR 360

Query: 361 LRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQ 416
           LRLMLSCPSKS+LARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVD+HPHEQ
Sbjct: 361 LRLMLSCPSKSALARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDVHPHEQ 412

[Close]

BLAST of Carg26726 vs. NCBI nr
Match: XP_023553969.1 (la-related protein 6B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 767.3 bits (1980), Expect = 6.8e-218
Identity = 408/415 (98.31%), Postives = 409/415 (98.55%), Query Frame = 0


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQ PPHSAAGPAPPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQPPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120
           PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY   HRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY---HRH 120

Query: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180
           HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKL EDVS
Sbjct: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLTEDVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
           LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR
Sbjct: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQ 416
           LRLMLSCPSKS+LARGKKGHSGEMN KDDETSEQPRIEKHVDDLSDQVDIHPHEQ
Sbjct: 361 LRLMLSCPSKSALARGKKGHSGEMNFKDDETSEQPRIEKHVDDLSDQVDIHPHEQ 412

[Close]

BLAST of Carg26726 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 351.3 bits (900), Expect = 1.5e-95
Identity = 234/437 (53.55%), Postives = 291/437 (66.59%), Query Frame = 0


Query: 4   HSSSSSLS-PSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPPPK 63
           HS+SS+ S  S SDPSL R+ SLSRLNA APEFVP                 G   PP  
Sbjct: 24  HSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVP-----------------GRTTPPLP 83

Query: 64  QSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRHHR 123
           Q PR++I  PPPPP  M+H+Y   P   PF+ P+  PVP+  H+V +QNH  H HHR H+
Sbjct: 84  QPPRMII--PPPPPHGMLHMYHHQP---PFNTPVLGPVPIQPHLVPVQNH--HPHHRFHQ 143

Query: 124 HHHHSHH-----VPVLYHPHNPQYYADNGGFHDPDTVVQQ-------------AQKPQVE 183
           HHHH+ H     VPV  H    Q     GG  +PD V ++              Q  +  
Sbjct: 144 HHHHNRHQNQQYVPVRNHGEY-QQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETG 203

Query: 184 TDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKK 243
              +  S++ L ED   K++NQVEYYFSDLNL TTDHLMRFI KDP+GYVPI VVASFKK
Sbjct: 204 ASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKK 263

Query: 244 IKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCH 303
           IKA+IN++SQLA +L+NS+KL VSEDGKKV+R  P++ES +EELQSRI++AENLPEDHC+
Sbjct: 264 IKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCY 323

Query: 304 QNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKS-AKADGMHYSSKLHAFVEYESVELAE 363
           QNLMKIFS VGSVKNIRTCQPQ + SGA   A+S AK+DG  +S+K+HAFVEYE VELAE
Sbjct: 324 QNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAE 383

Query: 364 KAVAELNDEGNWRNALRLRLMLSCPS---KSSLARGKKGHSGEMNCKDDE--TSEQPRIE 416
           +AV EL++ GNWR+ L++RLML   +   K    RG+KGH  ++  ++D+  TSEQ  IE
Sbjct: 384 RAVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIE 435

[Close]

BLAST of Carg26726 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.2e-49
Identity = 108/228 (47.37%), Postives = 154/228 (67.54%), Query Frame = 0


Query: 149 HDPDT---VVQQAQKPQVETDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRF 208
           HDP     +   A +     + ++ S++ L++D+ LK++ QVEY F+D++L   + + + 
Sbjct: 111 HDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKH 170

Query: 209 INKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDM 268
           I+KDP+GYVP+S +AS KKIKAL ++H  ++  LR+SSKL+VSEDGKKVKR    ++ D 
Sbjct: 171 ISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDR 230

Query: 269 EELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMH 328
           EELQ R V+AENLP+DH +QNL KIF  VG+VK IR C P  S+S         K D + 
Sbjct: 231 EELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNS------SRPKGDFL- 290

Query: 329 YSSKLHAFVEYESVELAEKAVAELNDEGNWRNALRLRLMLSCPSKSSL 374
            S+K+HA +EY++  +A+KAV +LNDE NWR  LR+RL+L C  KS L
Sbjct: 291 MSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVL 331

[Close]

BLAST of Carg26726 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.0e-35
Identity = 83/199 (41.71%), Postives = 125/199 (62.81%), Query Frame = 0


Query: 177 EDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 236
           ++++ K++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 237 NILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGS 296
           + L+ SS L+VS D KKVKR  PL E  + + +   V+ ENLPEDH ++N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 297 VKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWR 356
           +K++  C P    +    + K  K +     ++LHAFVEYE+VE AEKA A LN+E +WR
Sbjct: 221 IKSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 357 NALRLRLMLSCPSKSSLAR 376
           N LR++L+     K +  R
Sbjct: 281 NGLRVKLLEQAAGKFAQRR 292

[Close]

BLAST of Carg26726 vs. ExPASy Swiss-Prot
Match: Q28G87 (La-related protein 7 OS=Xenopus tropicalis OX=8364 GN=larp7 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.9e-14
Identity = 57/201 (28.36%), Postives = 100/201 (49.75%), Query Frame = 0


Query: 151 PDTVVQQAQKPQVETDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDP 210
           P   V++ +   +  D     RS++ + +   +  QV+++F D+NL     L   I K  
Sbjct: 9   PSNKVKEDESTDLRKDREKKKRSRV-KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKTR 68

Query: 211 DGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQS 270
           DGY+ IS++ASF K+K +      +A  ++NSS + ++  G K++R+ PL E   +++ S
Sbjct: 69  DGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLGEKP-QDVDS 128

Query: 271 RIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKL 330
           R V  E LP++  H  + ++F   G V  +    P+   +G                 K 
Sbjct: 129 RTVYVELLPKNVTHSWIERVFGKYGMV--VYVSIPRYKSTG---------------DPKG 188

Query: 331 HAFVEYESVELAEKAVAELND 352
            AF+E+E+ E A KA+  LN+
Sbjct: 189 FAFIEFETQEQAAKAIEVLNN 190

[Close]

BLAST of Carg26726 vs. ExPASy Swiss-Prot
Match: Q7ZWE3 (La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-13
Identity = 60/186 (32.26%), Postives = 100/186 (53.76%), Query Frame = 0


Query: 166 DYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKI 225
           D     RS++ + +S  +  QVE++F D+NL     +   I +  DGY+ I+V+ +F ++
Sbjct: 30  DNEKKKRSRVKQLLS-DVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRM 89

Query: 226 KALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQ 285
           K L      +A  L+NS+ + V+++G +++RK+PL E+  +++ SR V  E LP+   H 
Sbjct: 90  KNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELLPKTVTHI 149

Query: 286 NLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKA 345
            L ++FS  G V  I           +    KS +       SK  AFVE+E+ E A+KA
Sbjct: 150 WLERVFSKCGHVVYI-----------SIPRYKSTR------HSKGFAFVEFETQEQAQKA 196

Query: 346 VAELND 352
           V  LN+
Sbjct: 210 VEMLNN 196

[Close]

BLAST of Carg26726 vs. ExPASy TrEMBL
Match: A0A6J1GLH8 (la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV=1)

HSP 1 Score: 770.4 bits (1988), Expect = 3.9e-219
Identity = 409/415 (98.55%), Postives = 411/415 (99.04%), Query Frame = 0


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120
           PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY   HRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY---HRH 120

Query: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180
           HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS
Sbjct: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
           LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR
Sbjct: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360

Query: 361 LRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQ 416
           LRLMLSCPSKS+L+RGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIH HEQ
Sbjct: 361 LRLMLSCPSKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQ 412

[Close]

BLAST of Carg26726 vs. ExPASy TrEMBL
Match: A0A6J1I3E0 (la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111470630 PE=4 SV=1)

HSP 1 Score: 769.2 bits (1985), Expect = 8.7e-219
Identity = 406/415 (97.83%), Postives = 410/415 (98.80%), Query Frame = 0


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQ PPHSAAGPAPPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQPPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120
           PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY   HRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHY---HRH 120

Query: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLAEDVS 180
           HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKL EDVS
Sbjct: 121 HRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETDYAAPSRSKLTEDVS 180

Query: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240
           LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR
Sbjct: 181 LKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILR 240

Query: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300
           NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI
Sbjct: 241 NSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNI 300

Query: 301 RTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRNALR 360
           RTCQPQISDSGASST+KSAKADGMHYSSKLHAFVEYESVELAEKAVAE+NDEGNWRNALR
Sbjct: 301 RTCQPQISDSGASSTSKSAKADGMHYSSKLHAFVEYESVELAEKAVAEINDEGNWRNALR 360

Query: 361 LRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQ 416
           LRLMLSCPSKS+LARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVD+HPHEQ
Sbjct: 361 LRLMLSCPSKSALARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDVHPHEQ 412

[Close]

BLAST of Carg26726 vs. ExPASy TrEMBL
Match: A0A6J1EJ80 (la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111434957 PE=4 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 5.0e-190
Identity = 368/429 (85.78%), Postives = 386/429 (89.98%), Query Frame = 0


Query: 1   MAQHSSSSSLS------PSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAA 60
           MA HSSSS         PSQSDPSLSRNSSLSRLNAQAPEFVPTR S R DL QPPHS++
Sbjct: 1   MAHHSSSSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDL-QPPHSSS 60

Query: 61  GPAPPPP----KQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQS----PVPVPTHV 120
           G  PPPP    KQSPRILIPS PPPPPA+MHVYPPPPPGSPFHVPIQS    PVPVPTHV
Sbjct: 61  GSQPPPPPPSSKQSPRILIPS-PPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 120

Query: 121 VSLQNHHYHRHHRHHRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETD 180
           VS+ NHHYH HHRH  HHHHSHHVPVLYHPHNPQYYADNGGFHDPD VVQQ QKP VE+D
Sbjct: 121 VSIPNHHYHPHHRH--HHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESD 180

Query: 181 YAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIK 240
           Y APSR+KL E+VS KLLNQVEYYFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIK
Sbjct: 181 YGAPSRTKLTEEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIK 240

Query: 241 ALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQN 300
           ALINSHSQLANILRNSSKLMV+EDGKKV+RKQPLSESDMEELQSRIVIAENLP+DHCHQN
Sbjct: 241 ALINSHSQLANILRNSSKLMVNEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQN 300

Query: 301 LMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAV 360
           LMKIFSAVGSVKNIRTCQPQISD+G SST+KSAKADGMHYS+KLHAFVEYESV LAEKAV
Sbjct: 301 LMKIFSAVGSVKNIRTCQPQISDTGTSSTSKSAKADGMHYSNKLHAFVEYESVVLAEKAV 360

Query: 361 AELNDEGNWRNALRLRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSD 416
           AELNDEGNWRNALRLRLML+C SKS+  RGKKGH+GEMNCKDD+TSEQP IEKHVDDLSD
Sbjct: 361 AELNDEGNWRNALRLRLMLTCTSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSD 420

[Close]

BLAST of Carg26726 vs. ExPASy TrEMBL
Match: A0A6J1I059 (la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111468508 PE=4 SV=1)

HSP 1 Score: 668.7 bits (1724), Expect = 1.6e-188
Identity = 367/429 (85.55%), Postives = 383/429 (89.28%), Query Frame = 0


Query: 1   MAQHSSSSSLS--------PSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHS 60
           MA HSSSS           PSQSDPSLSRNSSLSRLNAQAPEFVPTR S R DL QPP S
Sbjct: 1   MAHHSSSSPSPSPSPSPPLPSQSDPSLSRNSSLSRLNAQAPEFVPTRSSPRPDL-QPPQS 60

Query: 61  AAG--PAPPPPKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQS----PVPVPTHV 120
           ++G  P PPP KQSPRILIPS PPPPPA+MHVYPPPPPGSPFHVPIQS    PVPVPTHV
Sbjct: 61  SSGSQPPPPPSKQSPRILIPS-PPPPPAVMHVYPPPPPGSPFHVPIQSPVPVPVPVPTHV 120

Query: 121 VSLQNHHYHRHHRHHRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTVVQQAQKPQVETD 180
           VS+ NHHYH HHRH  HHHHSHHVPVLYHPHNPQYYADNGGFHDPD VVQQ QKP VE+D
Sbjct: 121 VSIPNHHYHPHHRH--HHHHSHHVPVLYHPHNPQYYADNGGFHDPDNVVQQPQKPPVESD 180

Query: 181 YAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIK 240
           Y APSR+KL  +VS KLLNQVEYYFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIK
Sbjct: 181 YGAPSRTKLTGEVSQKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIK 240

Query: 241 ALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQN 300
           ALINSHSQLANILRNSSKLMVSEDGKKV+RKQPLSESDMEELQSRIVIAENLP+DHCHQN
Sbjct: 241 ALINSHSQLANILRNSSKLMVSEDGKKVRRKQPLSESDMEELQSRIVIAENLPDDHCHQN 300

Query: 301 LMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAV 360
           LMKIFSAVGSVKNIRTCQPQISDSG SST+KSAK DGMHYS+KLHAFVEYESV LAEKAV
Sbjct: 301 LMKIFSAVGSVKNIRTCQPQISDSGTSSTSKSAKTDGMHYSNKLHAFVEYESVVLAEKAV 360

Query: 361 AELNDEGNWRNALRLRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSD 416
           AELNDEGNWRNALRLRLML+C SKS+  RGKKGH+GEMNCKDD+TSEQP IEKHVDDLSD
Sbjct: 361 AELNDEGNWRNALRLRLMLTCTSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSD 420

[Close]

BLAST of Carg26726 vs. ExPASy TrEMBL
Match: A0A5A7TGF6 (La-related protein 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G003570 PE=4 SV=1)

HSP 1 Score: 657.5 bits (1695), Expect = 3.7e-185
Identity = 365/419 (87.11%), Postives = 379/419 (90.45%), Query Frame = 0


Query: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPP 60
           MAQHSSS     SQSD SLSRNSSLSRLNAQAPEFVPTRPS+R DLQ        P PPP
Sbjct: 1   MAQHSSS-----SQSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQ--------PLPPP 60

Query: 61  PKQSPRILIPS-PPPPPPAMMHVYPPPPPGSPFHVPIQ-SPVPVPTHVVSLQNHHYHRHH 120
           PKQSPRILIPS PPPPPPAMMH YPPPPPGSPFHVPIQ +PVPVPTHVVSLQNH Y   H
Sbjct: 61  PKQSPRILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSLQNHPY---H 120

Query: 121 RHHRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAE 180
            HHRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQ AQKP +E+DYAAPSRSKL +
Sbjct: 121 PHHRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDYAAPSRSKLTD 180

Query: 181 DVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLAN 240
           +VS KLLNQVEYYFSDLNL TTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLAN
Sbjct: 181 EVSQKLLNQVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLAN 240

Query: 241 ILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSV 300
           ILRNSSKL+VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSV
Sbjct: 241 ILRNSSKLLVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGSV 300

Query: 301 KNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWRN 360
           KNIRTCQPQISDSGASST+KSAKADGMHYS+KLHAFVEYESVELAEKAVAELNDEGNWRN
Sbjct: 301 KNIRTCQPQISDSGASSTSKSAKADGMHYSNKLHAFVEYESVELAEKAVAELNDEGNWRN 360

Query: 361 ALRLRLMLSCPSKSSLARGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHPHEQV 417
           ALRLRLMLSC SKS+  RGKKGH+GEMN KD + SEQP IEKHVDDLSDQVD+HP EQV
Sbjct: 361 ALRLRLMLSCSSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQVDVHPPEQV 403

[Close]

BLAST of Carg26726 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-96
Identity = 234/437 (53.55%), Postives = 291/437 (66.59%), Query Frame = 0


Query: 4   HSSSSSLS-PSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPPPK 63
           HS+SS+ S  S SDPSL R+ SLSRLNA APEFVP                 G   PP  
Sbjct: 24  HSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVP-----------------GRTTPPLP 83

Query: 64  QSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRHHR 123
           Q PR++I  PPPPP  M+H+Y   P   PF+ P+  PVP+  H+V +QNH  H HHR H+
Sbjct: 84  QPPRMII--PPPPPHGMLHMYHHQP---PFNTPVLGPVPIQPHLVPVQNH--HPHHRFHQ 143

Query: 124 HHHHSHH-----VPVLYHPHNPQYYADNGGFHDPDTVVQQ-------------AQKPQVE 183
           HHHH+ H     VPV  H    Q     GG  +PD V ++              Q  +  
Sbjct: 144 HHHHNRHQNQQYVPVRNHGEY-QQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETG 203

Query: 184 TDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKK 243
              +  S++ L ED   K++NQVEYYFSDLNL TTDHLMRFI KDP+GYVPI VVASFKK
Sbjct: 204 ASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKK 263

Query: 244 IKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCH 303
           IKA+IN++SQLA +L+NS+KL VSEDGKKV+R  P++ES +EELQSRI++AENLPEDHC+
Sbjct: 264 IKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCY 323

Query: 304 QNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKS-AKADGMHYSSKLHAFVEYESVELAE 363
           QNLMKIFS VGSVKNIRTCQPQ + SGA   A+S AK+DG  +S+K+HAFVEYE VELAE
Sbjct: 324 QNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAE 383

Query: 364 KAVAELNDEGNWRNALRLRLMLSCPS---KSSLARGKKGHSGEMNCKDDE--TSEQPRIE 416
           +AV EL++ GNWR+ L++RLML   +   K    RG+KGH  ++  ++D+  TSEQ  IE
Sbjct: 384 RAVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIE 435

[Close]

BLAST of Carg26726 vs. TAIR 10
Match: AT2G43970.2 (RNA-binding protein )

HSP 1 Score: 316.2 bits (809), Expect = 3.9e-86
Identity = 221/437 (50.57%), Postives = 276/437 (63.16%), Query Frame = 0


Query: 4   HSSSSSLS-PSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAGPAPPPPK 63
           HS+SS+ S  S SDPSL R+ SLSRLNA APEFVP                 G   PP  
Sbjct: 24  HSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVP-----------------GRTTPPLP 83

Query: 64  QSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRHHR 123
           Q PR++I  PPPPP  M+H+Y   P   PF+ P+  PVP+  H+V +QNH  H HHR H+
Sbjct: 84  QPPRMII--PPPPPHGMLHMYHHQP---PFNTPVLGPVPIQPHLVPVQNH--HPHHRFHQ 143

Query: 124 HHHHSHH-----VPVLYHPHNPQYYADNGGFHDPDTVVQQ-------------AQKPQVE 183
           HHHH+ H     VPV  H    Q     GG  +PD V ++              Q  +  
Sbjct: 144 HHHHNRHQNQQYVPVRNHGEY-QQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETG 203

Query: 184 TDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKK 243
              +  S++ L ED   K++NQVEYYFSDLNL TTDHLMRFI KDP+GYVPI VVASFKK
Sbjct: 204 ASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKK 263

Query: 244 IKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCH 303
           IKA+IN++SQLA +L+NS+KL VSEDGKKV+R  P++ES +EELQSRI++AENLPEDHC+
Sbjct: 264 IKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCY 323

Query: 304 QNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKS-AKADGMHYSSKLHAFVEYESVELAE 363
           QNLMKIFS VGSVKNIRTCQPQ + SGA   A+S AK+DG  +S+K              
Sbjct: 324 QNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNK-------------- 383

Query: 364 KAVAELNDEGNWRNALRLRLMLSCPS---KSSLARGKKGHSGEMNCKDDE--TSEQPRIE 416
             V EL++ GNWR+ L++RLML   +   K    RG+KGH  ++  ++D+  TSEQ  IE
Sbjct: 384 --VTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIE 419

[Close]

BLAST of Carg26726 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 198.0 bits (502), Expect = 1.5e-50
Identity = 108/228 (47.37%), Postives = 154/228 (67.54%), Query Frame = 0


Query: 149 HDPDT---VVQQAQKPQVETDYAAPSRSKLAEDVSLKLLNQVEYYFSDLNLTTTDHLMRF 208
           HDP     +   A +     + ++ S++ L++D+ LK++ QVEY F+D++L   + + + 
Sbjct: 111 HDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKH 170

Query: 209 INKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDM 268
           I+KDP+GYVP+S +AS KKIKAL ++H  ++  LR+SSKL+VSEDGKKVKR    ++ D 
Sbjct: 171 ISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDR 230

Query: 269 EELQSRIVIAENLPEDHCHQNLMKIFSAVGSVKNIRTCQPQISDSGASSTAKSAKADGMH 328
           EELQ R V+AENLP+DH +QNL KIF  VG+VK IR C P  S+S         K D + 
Sbjct: 231 EELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNS------SRPKGDFL- 290

Query: 329 YSSKLHAFVEYESVELAEKAVAELNDEGNWRNALRLRLMLSCPSKSSL 374
            S+K+HA +EY++  +A+KAV +LNDE NWR  LR+RL+L C  KS L
Sbjct: 291 MSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVL 331

[Close]

BLAST of Carg26726 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-36
Identity = 83/199 (41.71%), Postives = 125/199 (62.81%), Query Frame = 0


Query: 177 EDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 236
           ++++ K++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 237 NILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGS 296
           + L+ SS L+VS D KKVKR  PL E  + + +   V+ ENLPEDH ++N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 297 VKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWR 356
           +K++  C P    +    + K  K +     ++LHAFVEYE+VE AEKA A LN+E +WR
Sbjct: 221 IKSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 357 NALRLRLMLSCPSKSSLAR 376
           N LR++L+     K +  R
Sbjct: 281 NGLRVKLLEQAAGKFAQRR 292

[Close]

BLAST of Carg26726 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-36
Identity = 83/199 (41.71%), Postives = 125/199 (62.81%), Query Frame = 0


Query: 177 EDVSLKLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 236
           ++++ K++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 237 NILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGS 296
           + L+ SS L+VS D KKVKR  PL E  + + +   V+ ENLPEDH ++N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 297 VKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAFVEYESVELAEKAVAELNDEGNWR 356
           +K++  C P    +    + K  K +     ++LHAFVEYE+VE AEKA A LN+E +WR
Sbjct: 221 IKSVSICDP----NAVEESEKGGKKENF-IRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 357 NALRLRLMLSCPSKSSLAR 376
           N LR++L+     K +  R
Sbjct: 281 NGLRVKLLEQAAGKFAQRR 292

The following BLAST results are available for this feature:

BLAST of Carg26726 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018168.1	3.6e-227	100.00	La-related protein 6B, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6571819.1	8.1e-219	98.55	La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022952369.1	8.1e-219	98.55	la-related protein 6B-like [Cucurbita moschata]	[more]
XP_022971972.1	1.8e-218	97.83	la-related protein 6B-like [Cucurbita maxima]	[more]
XP_023553969.1	6.8e-218	98.31	la-related protein 6B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg26726 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80567	1.5e-95	53.55	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q9LHL3	2.2e-49	47.37	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
Q94A38	3.0e-35	41.71	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
Q28G87	3.9e-14	28.36	La-related protein 7 OS=Xenopus tropicalis OX=8364 GN=larp7 PE=2 SV=1	[more]
Q7ZWE3	1.9e-13	32.26	La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1	[more]

BLAST of Carg26726 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GLH8	3.9e-219	98.55	la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV...	[more]
A0A6J1I3E0	8.7e-219	97.83	la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111470630 PE=4 SV=1	[more]
A0A6J1EJ80	5.0e-190	85.78	la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111434957 PE=4 SV...	[more]
A0A6J1I059	1.6e-188	85.55	la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111468508 PE=4 SV=1	[more]
A0A5A7TGF6	3.7e-185	87.11	La-related protein 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of Carg26726 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43970.1	1.1e-96	53.55	RNA-binding protein	[more]
AT2G43970.2	3.9e-86	50.57	RNA-binding protein	[more]
AT3G19090.1	1.5e-50	47.37	RNA-binding protein	[more]
AT5G46250.1	2.2e-36	41.71	RNA-binding protein	[more]
AT5G46250.2	2.2e-36	41.71	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 186..203 score: 50.0 coord: 328..346 score: 27.75 coord: 243..256 score: 38.31 coord: 212..227 score: 32.95
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 177..257 e-value: 2.8E-35 score: 133.2
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 183..241 e-value: 3.1E-18 score: 65.5
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 173..264 score: 25.135078
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 171..260 e-value: 4.6E-26 score: 92.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 261..372 e-value: 2.7E-10 score: 42.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 371..421
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 376..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..84
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 7..393
None	No IPR available	PANTHER	PTHR22792:SF112	LA-RELATED PROTEIN 6B-LIKE	coord: 7..393
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 271..368 score: 9.473308
IPR034878	Plant La-related protein, RNA recognition motif	CDD	cd12288	RRM_La_like_plant	coord: 271..365 e-value: 6.50391E-45 score: 149.205
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 177..267
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 235..361

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26726-RA	Carg26726-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005844	polysome
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding