Carg26564 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26564
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	exosome complex component RRP4 homolog
Location	Carg_Chr02: 10040624 .. 10044517 (+)
RNA-Seq Expression	Carg26564
Synteny	Carg26564

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATTGTTGATTTCGTAACCATGTTTTGGAAAAATAAAACACAATAAGGTCATTTGATTTTGGCGCAGTTTCTTAAGGTCGTCCGTGTACAAAAACTCATTTATTTTCTTCTCCCTCCCTTTTTTTTCCTATGAACCCTAGATTTACGCTGTCACTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCATCCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCGTACGTTCAACTTCGCTGATTCCCCACGTTCTCCATTTCTTTCCCTCTCTCCTCTGCAACCATTGACGCTGTTTGCCGTCCGCATTTTGTATTTTTTCGTTTGCAGATCGCCTCGTTCCAGGGTCACTGCCGTCGCTGCATAGACGGCACCTGGTTGGCCTGTTGTACCTTTCGCCGTCGCACCTGGTTTGCTCGTCCACCTCTGTTCCTTTTATTCATTTTTTCCTCTATCTTCAGCAACCGGCGGCAACCTGTTGCCTCATTTGCACATTGTTCCATGTCCATAATTGATTGTTTTTTTTGCACAGTCGTGACTCGAAGAAATGATTATGTTGCGACGTTGCTAGTCCTTATTTGTGTAATTTTTTTCATCACGTACCAAATTATTACCGGATATCTGTACAAATATTTTGTTCCAGTACGTCGATTTTGGTGATCAGCATCCTGCAGCACCCCTATTTTCTAATTTAGTAATTTTCTTAATGCAGATATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCCAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTATATAATTCCTCACTATCTTTATACAATAGATATTTGGTTTGTGTACTTGCCTGGGGGTTATTGCATTGAGGATTAATTGAAATGTGTATACAGGGGACATGGAACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGGTTGTCCATGAATCTTTATAATTTGATTTTTCTTGATGATAGTTTAATGTTTCCCTTCTTTTGGTTTCTTGTTAGGGCGTCTTTTCTGATGCATTTGTCTGTATTGTTTATTAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTAAAACCAAATGCTTTTTATTAGGTTTAAGTTGGTGTGTAAAACTTATTCCTGAGTCATGGTTATGCTGTTCAAATCTGAAAAACGTGTTACAATGCAACCCCCCCAAATCTCTCCTATCTCATTCAGGTTGCTCCCAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGGTACTGGAGAAATCCCTTTTTTTTATGTACATAATGGTGTCTTGCACCAGACGATGAATTACTGCTGAATTTTGTAGATAACTCTACTGCAAACTTGCTGCAGTTTATCTTTTATAGAGTGATTGCGTTTGTGGATTATTGTTTGAACTTTGGTATATTCTTTTTTTTTTTTCCTAGAGGAGACGAACTGCAGTGGATGAACTCAACATGCGGACCATTTTTGAAGAAAATGATGTTATTTGCGTAAGTTTTTAGTTCCATTTTCACCTAGCACCATCAGAAAGAATACGTGCTACCAATTTTCTCATGTGACATACATCTAAGTGGGTTTGTTCCATGTTTTGAATATTTTGAAGCATTAAAATTTTATTAGTTTTTTTGGTTAGATAATTGTTTGATCCTAGGATATTTGATTGTTAAGAAACTTGTAGGATTTTAATATCATAGGAGAGTACCGTGGTACCATGGAGTTCGAACCATAACTTTAAGTTATACTGCCTTGACCTTTTGGCCAAAACACGATGGCCATGAATTTTTTTTATTTAACTCACAACGCCTTTGTAAAAGGTATGGAGCATAGGCTCCAGCACATTAGATTGATAGATGCATCTTTGGCACCTTGCTTGGTTTTGGGCCAGGTGTCTTAACTCAAGGGCCCTTTTGTGGCTTGTTGCTCTTCACTAAGGTCCCATTATTATTTTTTTGACATTCTAATGTTGTAGGTTCTTAACTCAAGAGCCTTGTTGTGCCTCTTGCCCATAAGTGTCATTCTTTAATTTTCTCTACTTTTCTCGCCTATAATTAAACACCACTCTCATCATTGATTGTTTCACATGCTTCATTTTCCAGTCAAGAAAAAAATAAAAATAAAATAACATCACCATAACTTTTCTCAGGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAGGCAAGAAGCCAGAAATATGGGAAGGTGAAATGAGTCCTTTTTTTAAGCTTCTGGATGTTGATGTAATAACAAAATAAGCTTTTGAAACAAATCTCCATACACATCTTCCCTTGTTTCTTAGGAGAGATTCTGTAAAAAGATTCTTGAAAGAATGTGAGTACTAATTTATAGAAGAACCTCCTGGGTAAATTCTAGTGGTTAAAACAAATTGTAAAGATGGGTTTGTTTGTTGCCCAGGAATAAGGGAAAAAGGGCTGTGATTAATGTGAAAAGAGTGACGGGTAGAAATCATTGAGTGAATGTAAGAACCAGCTAGCAGATGTGCCGAGGTAAGACAAAATGTAAGAGATGGTAAAAGAAAAGTTATTGTGCGAATGCGAAAAAACAAATACACCGCTAAGGCGTGAATAGCTATAACGCAAAATCTCAACACAGAAATTATGTTTACTTCTGATTGTTATATTTTCCTTTTATGCTTAAGCGTGATAAGTTCACAATCTTGGGAGGATTGTATTTGAATAAGATTTCTTCGTTGCAATGGTTATTATGTTCCTGACAACTTTTCTTAGTGACCGTTTTAAATATTGTTTTTCTTGATCAATAAGATTACTGCATTTGTATCCAGCTTGAAAGAGGTCAGCTTCTCACAGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGAATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAGTTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAAGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGAGGGGATGATTTGGTTTTCAAAATTGTGTAATTCACTCTTGATGGAAATTTTGCTACGAACAACTTGATTTTCTGAGGAACTCACTATGAGATCTTAGTTTGTGGAATTTTATGATGCCGACGATTGGTCTGCTACTAGTGTTAACATTATAGAATGCAATATTTGCTTAATTATTCTGTAGTAAGTGGTTTCATAAATTCACTAAACTTTATAAAATGTAGTATTTTCGCGGATGATATTTTTATTTGCCTACTCATTTGTATTACCGTAAAGGAATCGTTCATTCTGCGGTGTCTGTGACCAACCCAATGTAAGCTCTATGTGGAAGTTGATCAATTCTCTAAGTTACCAGGCAATGGAACAACGTCCGAGCAGACCAC

mRNA sequence

ATAATTGTTGATTTCGTAACCATGTTTTGGAAAAATAAAACACAATAAGGTCATTTGATTTTGGCGCAGTTTCTTAAGGTCGTCCGTGTACAAAAACTCATTTATTTTCTTCTCCCTCCCTTTTTTTTCCTATGAACCCTAGATTTACGCTGTCACTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCATCCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTTCACTGCCGCCTTCCATCGCCTCGTTCCAGGGTCACTGCCGTCGCTGCATAGACGGCACCTGGTTGGCCTGTTGTACCTTTCGCCGTCGCACCTGTCGTGACTCGAAGAAATGATTATGTTGCGACGTTGCTAGTCCTTATTTGTATATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCCAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGAACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGGGCGTCTTTTCTGATGCATTTGTCTGTATTGTTTATTAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTTGCTCCCAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGAGGAGACGAACTGCAGTGGATGAACTCAACATGCGGACCATTTTTGAAGAAAATGATGTTATTTGCGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAGGCAAGAAGCCAGAAATATGGGAAGCTTGAAAGAGGTCAGCTTCTCACAGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGAATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAGTTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAAGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGAGGGGATGATTTGGTTTTCAAAATTGTGTAATTCACTCTTGATGGAAATTTTGCTACGAACAACTTGATTTTCTGAGGAACTCACTATGAGATCTTAGTTTGTGGAATTTTATGATGCCGACGATTGGTCTGCTACTAGTGTTAACATTATAGAATGCAATATTTGCTTAATTATTCTGTAGTAAGTGGTTTCATAAATTCACTAAACTTTATAAAATGTAGTATTTTCGCGGATGATATTTTTATTTGCCTACTCATTTGTATTACCGTAAAGGAATCGTTCATTCTGCGGTGTCTGTGACCAACCCAATGTAAGCTCTATGTGGAAGTTGATCAATTCTCTAAGTTACCAGGCAATGGAACAACGTCCGAGCAGACCAC

Coding sequence (CDS)

ATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCCAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGAACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGGGCGTCTTTTCTGATGCATTTGTCTGTATTGTTTATTAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTTGCTCCCAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGAGGAGACGAACTGCAGTGGATGAACTCAACATGCGGACCATTTTTGAAGAAAATGATGTTATTTGCGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAGGCAAGAAGCCAGAAATATGGGAAGCTTGAAAGAGGTCAGCTTCTCACAGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGAATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAGTTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAAGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGAGGGGATGA

Protein sequence

MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG

Homology

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BLAST of Carg26564 vs. NCBI nr
Match: KAG7036378.1 (Exosome complex component RRP4-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 662.5 bits (1708), Expect = 1.9e-186
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM
Sbjct: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300
           VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM
Sbjct: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300

Query: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 341
           ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 340

[Close]

BLAST of Carg26564 vs. NCBI nr
Match: KAG6606437.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 630.6 bits (1625), Expect = 8.1e-177
Identity = 327/340 (96.18%), Postives = 327/340 (96.18%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVATICGVVERVNKLIYVRALRA             RYKPEVGDIIVGRVTEVAPKRW
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRA-------------RYKPEVGDIIVGRVTEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM
Sbjct: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300
           VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM
Sbjct: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300

Query: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 341
           ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg26564 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 627.9 bits (1618), Expect = 5.2e-176
Identity = 325/340 (95.59%), Postives = 326/340 (95.88%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVATICGVVERVNKLIYVRALRA             RYKPEVGDIIVGRVTEVAPKRW
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRA-------------RYKPEVGDIIVGRVTEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM
Sbjct: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300
           VEDPINKSEQKGSKFEG+FGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM
Sbjct: 241 VEDPINKSEQKGSKFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300

Query: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 341
           ETVSL ISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 ETVSLGISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg26564 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 627.5 bits (1617), Expect = 6.8e-176
Identity = 326/340 (95.88%), Postives = 326/340 (95.88%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVATICGVVERVNKLIYVRALRA             RYKPEVGDIIVGRVTEVAPKRW
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRA-------------RYKPEVGDIIVGRVTEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM
Sbjct: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300
           VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM
Sbjct: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300

Query: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 341
           ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg26564 vs. NCBI nr
Match: XP_022931250.1 (exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931253.1 exosome complex component RRP4 homolog [Cucurbita moschata])

HSP 1 Score: 626.3 bits (1614), Expect = 1.5e-175
Identity = 325/338 (96.15%), Postives = 325/338 (96.15%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVATICGVVERVNKLIYVRALRA             RYKPEVGDIIVGRVTEVAPKRW
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRA-------------RYKPEVGDIIVGRVTEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM
Sbjct: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300
           VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM
Sbjct: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300

Query: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKK 339
           ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKK
Sbjct: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]

BLAST of Carg26564 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 9.7e-117
Identity = 217/340 (63.82%), Postives = 270/340 (79.41%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+QTQK+R +RA+E L+S+SS ANSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GE++AT+CGVVERV+KL+YVR LRA             RYKPEVGDI+VGRV EVA KRW
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRA-------------RYKPEVGDIVVGRVIEVAQKRW 122

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHL 180
           R+++N++QD VLMLSSMN+PDGIQRRRT+VDELNMR IF E+DV+CAEVR FQHDG L L
Sbjct: 123 RVELNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQL 182

Query: 181 QARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDM 240
           QARSQKYGKLE+GQLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+     
Sbjct: 183 QARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE----- 242

Query: 241 MVEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVI 300
            V DP+   +QK  +   S  +  +E+ + PLETRQ ICR  NAIRVLS LGF +++EVI
Sbjct: 243 -VRDPMAIDDQKDEEMISS-SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVI 302

Query: 301 METVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKR 340
           METV+LS S NID+H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 METVNLSNSKNIDIHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of Carg26564 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.3e-43
Identity = 110/270 (40.74%), Postives = 156/270 (57.78%), Query Frame = 0


Query: 51  LKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVG 110
           ++GHGT   +G + A++ G V+RVNKLI V+ LR+             +Y PE+GD+I+G
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRS-------------KYVPEIGDLIIG 130

Query: 111 RVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVR 170
           ++ EV PKRW++DI   Q+AVLMLSS+NLP GIQRR+   DEL MR+ F+E D++ AEV+
Sbjct: 131 KIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQ 190

Query: 171 GFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWI 230
            +  DG + +  RS KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+
Sbjct: 191 QYFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWV 250

Query: 231 GEHVDPTEDMMVEDPINKSEQKGSKFEGSFGNQVQE-RIYTPLE-TRQNICRTANAIRVL 290
            +H    E+      I + E++ S  E  + N+  E   YT L  +R +IC    A R L
Sbjct: 251 SKH---NENQHSSVSITRLEEEAS--ESIYSNENDEIDGYTRLNISRVSICIKGLASRSL 310

Query: 291 -----SILGFIMSVEVIMETVSLSISLNID 313
                SI  F  S  V      L++  N+D
Sbjct: 311 PLTQASITNFYESSLVFSNLQDLTVPKNMD 321

[Close]

BLAST of Carg26564 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-42
Identity = 107/226 (47.35%), Postives = 139/226 (61.50%), Query Frame = 0


Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL +A + L     + +    VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVL 132
           RVNKLI V+AL+              RY  EVGDI+VGR+TEV  KRW+++ N   D+VL
Sbjct: 64  RVNKLICVKALKT-------------RYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVL 123

Query: 133 MLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLER 192
           +LSSMNLP G  RRR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +
Sbjct: 124 LLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQ 183

Query: 193 GQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWI---GEHVD 235
           G L+ VSP LVKR+K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 GVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

[Close]

BLAST of Carg26564 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-42
Identity = 105/227 (46.26%), Postives = 138/227 (60.79%), Query Frame = 0


Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     + +    VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVL 132
           RVNKLI V+AL+              RY  EVGDI+VGR+TEV  KRW+++ N   D+VL
Sbjct: 64  RVNKLICVKALKT-------------RYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVL 123

Query: 133 MLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLER 192
           +LSSMNLP G  RRR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +
Sbjct: 124 LLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQ 183

Query: 193 GQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTED 239
           G L+ VSP LVKR+K HFH L   G  +ILG NGFIW+    +  ED
Sbjct: 184 GVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

[Close]

BLAST of Carg26564 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-41
Identity = 104/218 (47.71%), Postives = 134/218 (61.47%), Query Frame = 0


Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     +      VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVL 132
           RVNKLI V+AL+              RY  EVGDI+VGR+TEV  KRW+++ N   D+VL
Sbjct: 64  RVNKLICVKALKT-------------RYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVL 123

Query: 133 MLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLER 192
           +LSSMNLP G  RRR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +
Sbjct: 124 LLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQ 183

Query: 193 GQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWI 230
           G L+ VSP LVKR+K HFH L   G  +ILG NGFIWI
Sbjct: 184 GVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWI 205

[Close]

BLAST of Carg26564 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 627.5 bits (1617), Expect = 3.3e-176
Identity = 326/340 (95.88%), Postives = 326/340 (95.88%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVATICGVVERVNKLIYVRALRA             RYKPEVGDIIVGRVTEVAPKRW
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRA-------------RYKPEVGDIIVGRVTEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM
Sbjct: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300
           VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM
Sbjct: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300

Query: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 341
           ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg26564 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 7.4e-176
Identity = 325/338 (96.15%), Postives = 325/338 (96.15%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVATICGVVERVNKLIYVRALRA             RYKPEVGDIIVGRVTEVAPKRW
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRA-------------RYKPEVGDIIVGRVTEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM
Sbjct: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300
           VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM
Sbjct: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300

Query: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKK 339
           ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKK
Sbjct: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]

BLAST of Carg26564 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 1.3e-169
Identity = 310/340 (91.18%), Postives = 321/340 (94.41%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVATICGVVERVNKLIYVRALRA             RYKPEVGDIIVGRVTEVAPKRW
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRA-------------RYKPEVGDIIVGRVTEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RL+INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLNINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDPTEDMM
Sbjct: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300
           +ED +NKSEQKGSKFEG+FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIM
Sbjct: 241 IEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIM 300

Query: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 341
           ETVSLS SLNI+VHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 ETVSLSFSLNINVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg26564 vs. ExPASy TrEMBL
Match: A0A6J1HVC7 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467017 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 3.4e-165
Identity = 303/340 (89.12%), Postives = 319/340 (93.82%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+SLNQTQ+IRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVATICGVVER+NKLIYVRALRA             RYKPEVGDIIVGRVTEVAPKRW
Sbjct: 61  GEVVATICGVVERINKLIYVRALRA-------------RYKPEVGDIIVGRVTEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RL+INYSQDAVLMLSSMNLPDGIQRR+TA DELNMR+IFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLNINYSQDAVLMLSSMNLPDGIQRRQTADDELNMRSIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGK+ERGQLLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFI IGE VDPTEDMM
Sbjct: 181 ARSQKYGKVERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIRIGERVDPTEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIM 300
           +ED +NKSEQKGSKFEG+FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIM
Sbjct: 241 IEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIM 300

Query: 301 ETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 341
           ETVSLS+SLNI+VHEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 ETVSLSLSLNINVHEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Carg26564 vs. ExPASy TrEMBL
Match: A0A6J1DNK7 (exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022753 PE=4 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 1.3e-159
Identity = 291/341 (85.34%), Postives = 311/341 (91.20%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+
Sbjct: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GEVVAT+CGVVERVNKLIYVRALRA             RYKPEVGDI+VGRV EVAPKRW
Sbjct: 61  GEVVATVCGVVERVNKLIYVRALRA-------------RYKPEVGDIVVGRVMEVAPKRW 120

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQ 180
           RLDINYSQ AVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQ
Sbjct: 121 RLDINYSQAAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQ 180

Query: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMM 240
           ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM
Sbjct: 181 ARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMM 240

Query: 241 VEDPINKSEQKGSKFEGSFGN-QVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVI 300
           +ED +NK EQKG K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVI
Sbjct: 241 IEDQVNKFEQKGPKSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVI 300

Query: 301 METVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKRG 341
           METV+LS+SLNIDVHEMLGSEFCVL AE E ERRTSSKKRG
Sbjct: 301 METVNLSLSLNIDVHEMLGSEFCVLVAENEVERRTSSKKRG 328

[Close]

BLAST of Carg26564 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 421.4 bits (1082), Expect = 6.9e-118
Identity = 217/340 (63.82%), Postives = 270/340 (79.41%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+QTQK+R +RA+E L+S+SS ANSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARASFLMHLSVLFIRYKPEVGDIIVGRVTEVAPKRW 120
           GE++AT+CGVVERV+KL+YVR LRA             RYKPEVGDI+VGRV EVA KRW
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRA-------------RYKPEVGDIVVGRVIEVAQKRW 122

Query: 121 RLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHL 180
           R+++N++QD VLMLSSMN+PDGIQRRRT+VDELNMR IF E+DV+CAEVR FQHDG L L
Sbjct: 123 RVELNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQL 182

Query: 181 QARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDM 240
           QARSQKYGKLE+GQLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+     
Sbjct: 183 QARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE----- 242

Query: 241 MVEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVI 300
            V DP+   +QK  +   S  +  +E+ + PLETRQ ICR  NAIRVLS LGF +++EVI
Sbjct: 243 -VRDPMAIDDQKDEEMISS-SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVI 302

Query: 301 METVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSSKKR 340
           METV+LS S NID+H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 METVNLSNSKNIDIHDMLGSEFHVVVAENEAERRRTKRKK 322

The following BLAST results are available for this feature:

BLAST of Carg26564 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036378.1	1.9e-186	100.00	Exosome complex component RRP4-like protein [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6606437.1	8.1e-177	96.18	Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023533481.1	5.2e-176	95.59	exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348...	[more]
XP_022995373.1	6.8e-176	95.88	exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom...	[more]
XP_022931250.1	1.5e-175	96.15	exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exos...	[more]

BLAST of Carg26564 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	9.7e-117	63.82	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q09704	9.3e-43	40.74	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q8VBV3	1.2e-42	47.35	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
Q2KID0	3.5e-42	46.26	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
Q13868	3.0e-41	47.71	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]

BLAST of Carg26564 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7S0	3.3e-176	95.88	exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]
A0A6J1EXY1	7.4e-176	96.15	exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1HGD9	1.3e-169	91.18	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HVC7	3.4e-165	89.12	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1DNK7	1.3e-159	85.34	exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673...	[more]

BLAST of Carg26564 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	6.9e-118	63.82	ribosomal RNA processing 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 103..182 e-value: 1.3E-4 score: 31.3
None	No IPR available	GENE3D	2.40.50.140		coord: 98..190 e-value: 1.8E-18 score: 68.3
None	No IPR available	GENE3D	2.40.50.100		coord: 29..86 e-value: 2.1E-15 score: 57.9
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 10..334
None	No IPR available	CDD	cd05789	S1_Rrp4	coord: 99..189 e-value: 7.62358E-34 score: 118.036
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 44..82
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 192..232 e-value: 2.3E-12 score: 47.1
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 10..334
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 99..189
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 192..335

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26564-RA	Carg26564-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding