Carg26534 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26534
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LEA_2 domain-containing protein
Location	Carg_Chr18: 1800778 .. 1802579 (+)
RNA-Seq Expression	Carg26534
Synteny	Carg26534

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCAAAAACGCCTCCAAATGCGAGTTTTCTATATACATATGGTTCCTACAAGTTCTAACAGTTCTAGGGTTAGCCTCTTTAGCCATATGGGCGAGCCTAATCCCCAAGAAGCCTATCTTCATGATCTCCAACATGGATTTGAAGCCATATCAAAATGGTAGCGCTAGCTCTTCCTTAGCATTGAATGTGACGATCTCAAACCCCAACAAAATGGTTGGTGTGTTCTTCGATGAGCTTAATGTAACGTACGTTGCAAGAATGAGAGTGTCGGGTCGAGCTCGATGTCGGGATTTTATTTGGAAAGCAAGAGAATTGATGTGCATGAGGTTGAGTTGGGTGTGAATGGGTTGTGTGGGAAGGTGGATTTGAGAGTTGGGTTGGTGACGAGTGTTGGATATAAGATTATGTGGTTCAAGACAAAGCATCGAGGGTTGGTTTTGGAAGATTGTGTTCATATTGGTCCTGATGGGCAAGTGGTGGGAACAAGAGAAATGAAGTTGAGCTAAGAACTCGAGAAGGCAAGGTGCTATGATAAGATGATAAGATAAGGAATCACTACAAGGGGAGTAAGATTCGGATGATTCGAATCTCAATTAAGTGTTCTTGCGTTGAGATATTTGATCAACAAGAATCATTTAAGTTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATATGCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTCCCCTTGTAGTGATTCCTTATCTTATCACTTGAGGTATAAGGCTATGATGCTGGTACTAGTAGCCAACAAAGCTCTAGGGTTATCCTATTTAAATGGATAGAAGTAGACCAGTTTTAGGTTGCTCGTGTAATTAAAGAGTCAGTGTCATTGTGTCTCGACTATGAAGGCTCTCAGCCATATGGATAGTTCAAGGTGTGATTTGTAAGTACAATTTAGTGAGAAATTATTTTGGAGCACTTGTGAAAATCTTTATTGTAATTGTAACGACAGTGATTTTTCCACTGAAATAGAGTCGCTATCATATGCATGATATAACCTCTTTATGTGGAAACATCATTAAAACAATATCATAAAACGATGTCCTGACTAACAAAATAAATGAGACCTATCATTTAAAACCCTTATTCTTTTAGGGGGCCTCCAATCTATGCACATTGGATGCGTAGTCTTCTCTATACACAACCTACACGTGCAAGCATGAGCCTACCAGGCAGGCTCACAGACACCCTGGGCCTACTGGTCGGACTAGATTCTCTAGGCTATAGTCAGACACTCGAAGGTACAGCGACTGTCACTGCAGCACCCTGACCCGATGCGACCCGTGAGATGACCTGAACTGCCTTTCGACCCGAGACGCCTGCACACAACGTGGCTCACTCCTGGCTTGCCACGTGTTGACCTGCGGCGCAAACAGTCCTTCAGCTTAGACGGCTTGGTGTGGCTCCTCGGCTTATTCGGCTTGGGTACCCCTATTTTAGTCCGATTTTCACTGTTTCGACCCTCTCGAACTTGTTTTCGGCCCAGATAAGATAATTGAGATCGAAATGAAAGTGGAGGCACCCAAAAATTGTCGTCGTCCAAGGTTGTCCATTGTCCTGTCCGGATTCATACTATTTCTACGTTTGCGTGCAAATTTGGAAACTGACTTCTTACTAATCTTCTTATGATCGACATGCTCAATTTTCCAACTTTCCTCTTCCTCCTCAGTTTCGTTATCCATGGAAGCGCTCACAACCCAGATGGACCCCCATCTCCTCCTCCGCCACCGCCGTCGCCGTCG

mRNA sequence

ATGGAAGCCAAAAACGCCTCCAAATGCGAGTTTTCTATATACATATGGTTCCTACAAGTTCTAACAGTTCTAGGGTTAGCCTCTTTAGCCATATGGGCGAGCCTAATCCCCAAGAAGCCTATCTTCATGATCTCCAACATGGATTTGAAGCCATATCAAAATGGTAGCGCTAGCTCTTCCTTAGCATTGAATGTGACGATCTCAAACCCCAACAAAATGGTTGGTGTGTTCTTCGATGAGCTTAATAATGAGAGTGTCGGGTCGAGCTCGATGTCGGGATTTTATTTGGAAAGCAAGAGAATTGATGTGCATGAGGTTGAGTTGGGTGTGAATGGGTTGTGTGGGAAGGTGGATTTGAGAGTTGGGTTGGTGACGAGTGTTGGATATAAGATTATGTGGTTCAAGACAAAGCATCGAGGTTTCGTTATCCATGGAAGCGCTCACAACCCAGATGGACCCCCATCTCCTCCTCCGCCACCGCCGTCGCCGTCG

Coding sequence (CDS)

ATGGAAGCCAAAAACGCCTCCAAATGCGAGTTTTCTATATACATATGGTTCCTACAAGTTCTAACAGTTCTAGGGTTAGCCTCTTTAGCCATATGGGCGAGCCTAATCCCCAAGAAGCCTATCTTCATGATCTCCAACATGGATTTGAAGCCATATCAAAATGGTAGCGCTAGCTCTTCCTTAGCATTGAATGTGACGATCTCAAACCCCAACAAAATGGTTGGTGTGTTCTTCGATGAGCTTAATAATGAGAGTGTCGGGTCGAGCTCGATGTCGGGATTTTATTTGGAAAGCAAGAGAATTGATGTGCATGAGGTTGAGTTGGGTGTGAATGGGTTGTGTGGGAAGGTGGATTTGAGAGTTGGGTTGGTGACGAGTGTTGGATATAAGATTATGTGGTTCAAGACAAAGCATCGAGGTTTCGTTATCCATGGAAGCGCTCACAACCCAGATGGACCCCCATCTCCTCCTCCGCCACCGCCGTCGCCGTCG

Protein sequence

MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQNGSASSSLALNVTISNPNKMVGVFFDELNNESVGSSSMSGFYLESKRIDVHEVELGVNGLCGKVDLRVGLVTSVGYKIMWFKTKHRGFVIHGSAHNPDGPPSPPPPPPSPS

Homology

[Close]

BLAST of Carg26534 vs. NCBI nr
Match: KAG7012385.1 (NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQNGSASSS 60
           MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQNGSASSS
Sbjct: 1   MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQNGSASSS 60

Query: 61  LALNVTISNPNKMVGVFFDELNNESVGSSSMSGFYLESKRIDVHEVELGVNGLCGKVDLR 120
           LALNVTISNPNKMVGVFFDELNNESVGSSSMSGFYLESKRIDVHEVELGVNGLCGKVDLR
Sbjct: 61  LALNVTISNPNKMVGVFFDELNNESVGSSSMSGFYLESKRIDVHEVELGVNGLCGKVDLR 120

Query: 121 VGLVTSVGYKIMWFKTKHRGFVIHGSAHNPDGPPSPPPPPPSPS 165
           VGLVTSVGYKIMWFKTKHRGFVIHGSAHNPDGPPSPPPPPPSPS
Sbjct: 121 VGLVTSVGYKIMWFKTKHRGFVIHGSAHNPDGPPSPPPPPPSPS 164

[Close]

BLAST of Carg26534 vs. NCBI nr
Match: KAG6573211.1 (NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 143/159 (89.94%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQNGSASSS 60
           MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIP KPIFMISNMDLKPYQNGSASSS
Sbjct: 1   MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPTKPIFMISNMDLKPYQNGSASSS 60

Query: 61  LALNVTISNPNKMVGVFFDELN------NESVGSSSMSGFYLESKRIDVHEVELGVNGLC 120
           LALNVTISNPNKMVGVFFDELN      NESVGSSSMSGFYLESKRIDVHEVELGVNGLC
Sbjct: 61  LALNVTISNPNKMVGVFFDELNVTVRCKNESVGSSSMSGFYLESKRIDVHEVELGVNGLC 120

Query: 121 GKVDLRVGLVTSVGYKIMWFKTKHRGFVIHGSAH-NPDG 153
           GKVDLRVGL TSVGYKIMWFKTKHRG V+    H  PDG
Sbjct: 121 GKVDLRVGLATSVGYKIMWFKTKHRGLVLEDCVHIGPDG 159

[Close]

BLAST of Carg26534 vs. NCBI nr
Match: XP_038895943.1 (uncharacterized protein LOC120084116 [Benincasa hispida])

HSP 1 Score: 181.0 bits (458), Expect = 8.1e-42
Identity = 107/161 (66.46%), Postives = 116/161 (72.05%), Query Frame = 0


Query: 3   AKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQNGSA----S 62
           AK  S CE SIYIWFLQVLT+LGL SLAIWA+L PK PIF ISNMDLKPYQN +     S
Sbjct: 4   AKRYSNCERSIYIWFLQVLTILGLVSLAIWATLTPKTPIFTISNMDLKPYQNDTILARNS 63

Query: 63  SSLALNVTISNPNKMVGVFFDELN------NESV-----GSSSMSGFYLESKRIDVHEVE 122
           SSLALNVTISN N+MVG+FFDELN      NES+      S S+SGFYL  K  D+ EV+
Sbjct: 64  SSLALNVTISNTNRMVGIFFDELNITIGCKNESIIGSRSWSRSVSGFYLGHKSSDLEEVD 123

Query: 123 LGV--NG--LCGKVD--LRVGLVTSVGYKIMWFKTKHRGFV 143
           LGV  NG  LCG VD  LRV L T V YKIMWFKTKHRG V
Sbjct: 124 LGVENNGLLLCGNVDYYLRVRLETGVRYKIMWFKTKHRGLV 164

[Close]

BLAST of Carg26534 vs. NCBI nr
Match: XP_022140153.1 (cysteine-rich receptor-like protein kinase 10 [Momordica charantia])

HSP 1 Score: 164.1 bits (414), Expect = 1.0e-36
Identity = 88/160 (55.00%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 2   EAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQNGSA---- 61
           + K   KCE S+YIWFLQV+TVLGL SLAIWAS+ PK P F ISN+DLKP+QN +A    
Sbjct: 7   KTKTFPKCETSVYIWFLQVVTVLGLTSLAIWASITPKTPTFAISNLDLKPHQNDTAFARS 66

Query: 62  SSSLALNVTISNPNKMVGVFFDELN------NESVGSSSMSGFYLESKRIDVHEVELGVN 121
           SS +ALN+T+SNPN+M G+FFDE+N      N+SVG+ S+ GFYL  +  D  EVE+ VN
Sbjct: 67  SSVVALNMTVSNPNRMAGIFFDEINVTVRCKNDSVGAKSVPGFYLGHESSDWKEVEMSVN 126

Query: 122 --GLCGKVDLRVGLVTSVGYKIMWFKTKHRGFVIHGSAHN 150
                G+VDLRVGL T V YKI+ FK+++R  V      N
Sbjct: 127 CGAADGRVDLRVGLETRVRYKILRFKSRNRRLVFEDCVEN 166

[Close]

BLAST of Carg26534 vs. NCBI nr
Match: XP_008441503.1 (PREDICTED: NDR1/HIN1-Like protein 3-like isoform X2 [Cucumis melo] >XP_016899081.1 PREDICTED: NDR1/HIN1-Like protein 3-like isoform X1 [Cucumis melo] >TYJ99389.1 NDR1/HIN1-Like protein 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 2.6e-32
Identity = 92/164 (56.10%), Postives = 106/164 (64.63%), Query Frame = 0


Query: 1   MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQN-----G 60
           M +K  S C+  IYIWFLQVLT+L LASLAIWA+L PK P F I+NMDLKPY       G
Sbjct: 1   MTSKRGSHCD--IYIWFLQVLTILVLASLAIWATLTPKTPTFTITNMDLKPYIRNDTVLG 60

Query: 61  SASSSLALNVTISNPNKMVGVFFDEL------NNESV-----GSSSMSGFYLESKRIDVH 120
           + SS LA NVTISNPNKM GVF DE+      NNESV      S S++GFYL     D+ 
Sbjct: 61  TNSSFLAFNVTISNPNKMTGVFLDEINVTIGCNNESVTGSRSWSKSVAGFYLGHSVSDLK 120

Query: 121 EVELGVNG----LCGKVD--LRVGLVTSVGYKIMWFKTKHRGFV 143
           EV+L V      LC KVD  L+V L T V YK+MWFKT+HR  V
Sbjct: 121 EVDLSVEDNELLLCRKVDYYLKVELETGVRYKVMWFKTRHRRLV 162

[Close]

BLAST of Carg26534 vs. ExPASy Swiss-Prot
Match: Q9SRN1 (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-05
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 18  LQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQ---NGSASSSLALNVTISNPNKMV 77
           + V  +LG+A+L +W    P    F +++ +L  +    N +   SL LN TI NPN+ V
Sbjct: 60  IAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRV 119

Query: 78  GVFFDELN------NESVGSSSMSGFYLESKRIDV 104
           GV++DE +      ++  GS+++S FY   K   V
Sbjct: 120 GVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTV 154

[Close]

BLAST of Carg26534 vs. ExPASy TrEMBL
Match: A0A6J1CHD2 (cysteine-rich receptor-like protein kinase 10 OS=Momordica charantia OX=3673 GN=LOC111010883 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 5.0e-37
Identity = 88/160 (55.00%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 2   EAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQNGSA---- 61
           + K   KCE S+YIWFLQV+TVLGL SLAIWAS+ PK P F ISN+DLKP+QN +A    
Sbjct: 7   KTKTFPKCETSVYIWFLQVVTVLGLTSLAIWASITPKTPTFAISNLDLKPHQNDTAFARS 66

Query: 62  SSSLALNVTISNPNKMVGVFFDELN------NESVGSSSMSGFYLESKRIDVHEVELGVN 121
           SS +ALN+T+SNPN+M G+FFDE+N      N+SVG+ S+ GFYL  +  D  EVE+ VN
Sbjct: 67  SSVVALNMTVSNPNRMAGIFFDEINVTVRCKNDSVGAKSVPGFYLGHESSDWKEVEMSVN 126

Query: 122 --GLCGKVDLRVGLVTSVGYKIMWFKTKHRGFVIHGSAHN 150
                G+VDLRVGL T V YKI+ FK+++R  V      N
Sbjct: 127 CGAADGRVDLRVGLETRVRYKILRFKSRNRRLVFEDCVEN 166

[Close]

BLAST of Carg26534 vs. ExPASy TrEMBL
Match: A0A1S3B3M5 (NDR1/HIN1-Like protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485604 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 92/164 (56.10%), Postives = 106/164 (64.63%), Query Frame = 0


Query: 1   MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQN-----G 60
           M +K  S C+  IYIWFLQVLT+L LASLAIWA+L PK P F I+NMDLKPY       G
Sbjct: 1   MTSKRGSHCD--IYIWFLQVLTILVLASLAIWATLTPKTPTFTITNMDLKPYIRNDTVLG 60

Query: 61  SASSSLALNVTISNPNKMVGVFFDEL------NNESV-----GSSSMSGFYLESKRIDVH 120
           + SS LA NVTISNPNKM GVF DE+      NNESV      S S++GFYL     D+ 
Sbjct: 61  TNSSFLAFNVTISNPNKMTGVFLDEINVTIGCNNESVTGSRSWSKSVAGFYLGHSVSDLK 120

Query: 121 EVELGVNG----LCGKVD--LRVGLVTSVGYKIMWFKTKHRGFV 143
           EV+L V      LC KVD  L+V L T V YK+MWFKT+HR  V
Sbjct: 121 EVDLSVEDNELLLCRKVDYYLKVELETGVRYKVMWFKTRHRRLV 162

[Close]

BLAST of Carg26534 vs. ExPASy TrEMBL
Match: A0A5D3BKC2 (NDR1/HIN1-Like protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006070 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 92/164 (56.10%), Postives = 106/164 (64.63%), Query Frame = 0


Query: 1   MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQN-----G 60
           M +K  S C+  IYIWFLQVLT+L LASLAIWA+L PK P F I+NMDLKPY       G
Sbjct: 1   MTSKRGSHCD--IYIWFLQVLTILVLASLAIWATLTPKTPTFTITNMDLKPYIRNDTVLG 60

Query: 61  SASSSLALNVTISNPNKMVGVFFDEL------NNESV-----GSSSMSGFYLESKRIDVH 120
           + SS LA NVTISNPNKM GVF DE+      NNESV      S S++GFYL     D+ 
Sbjct: 61  TNSSFLAFNVTISNPNKMTGVFLDEINVTIGCNNESVTGSRSWSKSVAGFYLGHSVSDLK 120

Query: 121 EVELGVNG----LCGKVD--LRVGLVTSVGYKIMWFKTKHRGFV 143
           EV+L V      LC KVD  L+V L T V YK+MWFKT+HR  V
Sbjct: 121 EVDLSVEDNELLLCRKVDYYLKVELETGVRYKVMWFKTRHRRLV 162

[Close]

BLAST of Carg26534 vs. ExPASy TrEMBL
Match: A0A0A0LRN3 (Harpin inducing protein 1-like 9 OS=Cucumis sativus OX=3659 GN=Csa_1G064770 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 88/153 (57.52%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 13  IYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPY-QNGSA-----SSSLALNVT 72
           IYIWFLQVLT+L LA LAIWA+L P+ P F I+NMDLKPY +N +A     SS LA NVT
Sbjct: 12  IYIWFLQVLTILVLAFLAIWATLTPRTPTFTITNMDLKPYIRNDTALATTNSSFLAFNVT 71

Query: 73  ISNPNKMVGVFFDEL------NNESV-----GSSSMSGFYLESKRIDVHEVELGVN---- 132
           ISNPNKM+GVF DE+      NNES+      S SM+GFYL     D+ EV+L V+    
Sbjct: 72  ISNPNKMIGVFLDEINVTIGCNNESLIGSRSWSKSMAGFYLGHSVSDLKEVDLSVDDNEL 131

Query: 133 GLCGKVD--LRVGLVTSVGYKIMWFKTKHRGFV 143
            LC KVD  LRVG+ T V YKIMWF T+H G V
Sbjct: 132 SLCRKVDYYLRVGVDTGVRYKIMWFITRHHGLV 164

[Close]

BLAST of Carg26534 vs. ExPASy TrEMBL
Match: A0A5A7URJ4 (NDR1/HIN1-Like protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G00550 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 90/188 (47.87%), Postives = 109/188 (57.98%), Query Frame = 0


Query: 1   MEAKNASKCEFSIYIWFLQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQN-----G 60
           M +K  S C+  IYIWFLQVLT+L LASLAIWA+L PK P F I+NMDLKPY       G
Sbjct: 1   MTSKRGSHCD--IYIWFLQVLTILVLASLAIWATLTPKTPTFTITNMDLKPYIRNDTVLG 60

Query: 61  SASSSLALNVTISNPNKMVGVFFDEL------NNESV-----GSSSMSGFYLESKRIDVH 120
           + SS LA NVTISNPNKM GVF DE+      NNESV      S S++GFYL     D+ 
Sbjct: 61  TNSSFLAFNVTISNPNKMTGVFLDEINVTIGCNNESVTGSRSWSKSVAGFYLGHSVSDLK 120

Query: 121 EVELGVNG----LCGKVDLRVGLVTSVGYKIMWFKTKHRGFVIHGSAHNPD------GPP 163
           EV+L V      LC KVD  + + T+  ++I   + KH G    G+   PD      G  
Sbjct: 121 EVDLSVEDNELLLCRKVDYYLKVDTTRKWRIPDVE-KHVGIKNVGNKGFPDALNNASGDA 180

[Close]

BLAST of Carg26534 vs. TAIR 10
Match: AT3G11650.1 (NDR1/HIN1-like 2 )

HSP 1 Score: 51.2 bits (121), Expect = 9.1e-07
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 18  LQVLTVLGLASLAIWASLIPKKPIFMISNMDLKPYQ---NGSASSSLALNVTISNPNKMV 77
           + V  +LG+A+L +W    P    F +++ +L  +    N +   SL LN TI NPN+ V
Sbjct: 60  IAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRV 119

Query: 78  GVFFDELN------NESVGSSSMSGFYLESKRIDV 104
           GV++DE +      ++  GS+++S FY   K   V
Sbjct: 120 GVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTV 154

[Close]

BLAST of Carg26534 vs. TAIR 10
Match: AT4G05220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 45.8 bits (107), Expect = 3.8e-05
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 17  FLQVLTVLGLASLAIWASLIPKKPIFMISNMDLK--PYQNGSASSSLALNVTISNPNKMV 76
           FL VL  +G+ +  +W SL P +P F I +  ++      G  ++ +A NVTI NPN+ +
Sbjct: 50  FLLVLFFVGVIAFILWLSLRPHRPRFHIQDFVVQGLDQPTGVENARIAFNVTILNPNQHM 109

Query: 77  GVFFDEL 82
           GV+FD +
Sbjct: 110 GVYFDSM 116

The following BLAST results are available for this feature:

BLAST of Carg26534 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012385.1	2.0e-85	100.00	NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6573211.1	1.1e-70	89.94	NDR1/HIN1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038895943.1	8.1e-42	66.46	uncharacterized protein LOC120084116 [Benincasa hispida]	[more]
XP_022140153.1	1.0e-36	55.00	cysteine-rich receptor-like protein kinase 10 [Momordica charantia]	[more]
XP_008441503.1	2.6e-32	56.10	PREDICTED: NDR1/HIN1-Like protein 3-like isoform X2 [Cucumis melo] >XP_016899081...	[more]

BLAST of Carg26534 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRN1	1.3e-05	32.63	NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1	[more]

BLAST of Carg26534 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHD2	5.0e-37	55.00	cysteine-rich receptor-like protein kinase 10 OS=Momordica charantia OX=3673 GN=...	[more]
A0A1S3B3M5	1.3e-32	56.10	NDR1/HIN1-Like protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485604...	[more]
A0A5D3BKC2	1.3e-32	56.10	NDR1/HIN1-Like protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0LRN3	1.2e-30	57.52	Harpin inducing protein 1-like 9 OS=Cucumis sativus OX=3659 GN=Csa_1G064770 PE=4...	[more]
A0A5A7URJ4	1.1e-23	47.87	NDR1/HIN1-Like protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Carg26534 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11650.1	9.1e-07	32.63	NDR1/HIN1-like 2	[more]
AT4G05220.1	3.8e-05	37.31	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..164
None	No IPR available	PANTHER	PTHR31415:SF125	PROTEIN NDR1-LIKE	coord: 3..139
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 3..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26534-RA	Carg26534-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0031224	intrinsic component of membrane