Carg26514 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGCCAGAGAAGAGGACCAGAGCGCCAAAATGGATCCTCCTTGTTCCCCTTCCGGCTGCAATCCTCCAGAGCCCCCCCTCTCCAAGAATGCAAGGAAGAAGCTACTGAAACAACAGCGTTACGAAACGAAGAAAGCGGAGAAGAAAGCTCAGGAAAAAGAGCAGAAGAAGAAAGATATTGAGCGCAAACGGAAGGAATGGGAGGAGACACTGGCGAGTGTTACGGAGGAGGAGAGAGCCAAGCTGATCGAGTCTAGGAAAAGCCTGAGGAAGGAGAGGATGGGGAAGAGGTCGGAGGAGAAGGAGAAGAAGATTGAGCGGCTCAACAGGGCTAAAGATTGTGGTCAGAAGATTGTCATCGACCTTGAATTTTCTGACCTCATGACCCCCTCGGAGATTCACAGTCTTGTTCAGCAGGTTTGTTCTCTTGTTACTCACTTCATTTGGTTGATTAACTATTATTCGTGGTGGTGCGAATACTGGATTGTTTTCTTATATTTTAGAGGTTTGGTAAATGTTTCTAGTAGATGGAATGTAGAGCATCTTAGAAATGAAATTGATTGTTTCTTAGAAGACCATACATTTGAGATGAAGGGCTTCTTCTCTGAGGTCCCTTAAGAACTGAAATGGAATGTATTCTAGGAATACCATAAATTTGGGAGGTTTTCTAAGCCAAATAGTTTGAGAAGGAAAGCCTTGGCAGACTCAAATCTAGTTTTAGTAGTTGATCAAGTGACGATTAATTGTTTCTTGGAAGACAATCAAATGCCGCCTGAGTCAACACAAACGCATGACTTGAAGTGCCTCTCTACCTTTTCTTTATTTTTCTTTCCCACTTTTGTAGAACAATTGATCATCTTTGGTTTCTTGCAAGTAGCAAAAGATCCTTTCAGTATCCAAAAAAGATGCAGCTACATTGGATTCTCCCTAAATCTCTTCTGTTGCAGTTAAGTGCATCAAACTACCCACCATTTGGTTATAAAGTGTGTCGTTCACCTTCTTTCTTCTTTCCTTCACGGTCTTGATTTAGTTCCAAGCCAGACTCAGTTCGAGTATGCATAGGATTGTACTTTGTTTGAAAAGCATTTAAAATTTCTTGCAACAAACCTTTGAAACTGTAAAGATTTTTTTGTACTATTTGGGAGGAAAAGAAAAAGCCTGTGGCTGTTTGTAATATTTCAATACCAAGGAAATAATACATACTTCAAGATCACATCATTTCTAGTATTAGTAAGATCATCTACGTACTAACAAACAATGAGTTCATTGCCTCCATCTCCAGGTTTTGTGGAAAGGTTATGCTCATAATGATATTTCCTGAAAGCTTTCTTTAAGAAATAAATACCAACAATACTACACGAAAGCTCTTGGAGCATGTTTTAGTCTGTTACTTCTTTGAAACTTATACGCATTAGCTCATCTCCAATCTTTTAACGTGGTGATGATTTCAGTTGGTTAATTTCTTTTATCCTTAAATATGCGTTCCACCTAGGGAAGCTCCCGCAAAATTTCCTTAGTGTTGGATAAATTTCCCACACATTTTGACAATGAATGAAAGGTGTCTATGTAACATCTATCATGTGGGATATTGCATATTTGATTTGAAAAATACTTGGCTTGCCTACACACCAGCTGCTGACGGTAGGATACCCTACTGCCTTTCTATTATGGTGTATTTTTAGTGGCTCAAAAAAGTTTAGTGGAGTCTACTTATCTATTAAATGCAATAGAAAGAGACAATAAAAATGATCTATATTAGAAATTAGTTGGATATTTTAATGACTAGTATGTAGGCAGTATTGTTCTTTCAATCCATCTCCCACAAGGAGGAGTAGTTTGAGCTTCTACCATGGGATCCTTATCCTTCATTTCCAACATTAGAATTTATATATATATACAAACAACAATTTCTTCATGTCATTGATAAGACGTAATTACAAAAGAAGGCAAACTATGTGCCGAAGAGGGTATAATTTACACCAAGAGAAAGCAATAGGTATAATTTACACTAGTACAACTTCTTAACCTTGTTTCACCTTTGTTTTCTTCAAGCCTTACAAATGATGAAAATGAGGTTTGAGTCTCTTTTCCCCAAAACTGAATTCTCCAAAAAAAATTAATGAATTTTATGAGTGAATATTACTCATCCTTGATATATTTTTTTAAACAAAGTCTGCTCTCGCTCCAAGACCCAGAATTTGCTCACATAAAGAACTTTCCTTTGTAAGCTCAACTGTAGATTTGAAAACGTGATCTTTGGGTAGGTGTTATACATCCTTGATGTCGACTTATCCCCTGGTCTAGTAATGTCACATTTTTCCAGCTGAAGGAGATTCACGTGTGAGATTTTTGATATGTACCCCTCTATTGGTATTGTGATTTTCCTTCACTTCCTCTAATTGAACCAAATGACCTGGTTTGTAGAACTTGCTGTCTACACTGCTTTCCTTGGGTAACCCTTTATGATATAATGGAAGGGCTCCCAACCTTCCCTCCCCCTCCTACAAGAATCAAGAGTGTATTTTTCCATTGCCATCATTTTTTAAGAATTCATGCTGAAGCATCCTGTCATTCATGCTGAAGCATCCTGTCATTCATGCTGAAGCATCCTGTCAGATATATTCTCCACTCAACAAAATAATCATTACTCGAAATTCTTAGAATAATTTGGAATTAGATTGTACTGAATCTATAGCGGTAGCTTTGGAACAATAACTCAACAACTATATGGATACCTGGTTGATAGAGAGTGACAAGAACCATTGTTTTCTCATTCAAGCCCTGGATAGCTCTCTCCGTACCTACTGGCCACCACGATCTTAAATCAATAAAATGCTTGACTAATCCCACCCTCTCGAAACTCATAACCATAGAGAACCATTGGAAAGGGGGGAAAAGAGAATGAAGAAGATGAAGAAGATGAAGAAGAACAGGGGAATGCATCGTAGGAGTCGCTCTTTTCAAAATTTAACTTTCCACATGTTTAATAAAATCATTAGTTTGTAGGTTTAAATTTAGCTTTGAATCATATGATTATACAAGATTCCTATTGGGAGACAATGACTTTATATTGCACCTAAATACTCGGTACTTCTACTAATGTCTGGGATGAGCTCTATTTAATTAGATTAGACTAAGATGCCACATTTTTTGATACTCTTATTGACTCATATATAATTCAAGATTCAGAAATAGAAACTGTCAAAGCATGACACTACTTAGTAGACTTTTCCTACGTTATTTGTCATGCTAAGACATTTGTGAAACACTTCATCATCCCTATTCTACATCATCCCAAAGCTGGTTTATTGTCTTCACATTAAGTTATGGTTAGGATCCTGCCAAATAGTATCTTTTTTTCAATTTACAAATGATTCACACTTCTGACCAATTACTGAGCATGTTTTATCCTATGCAGTCGTCTTTATTTTGATTTTTAATGCACGGTTAATTTTTCAAGAATGATTCTATAATCTCCTGGAAACTGCAAGGTTTTTGAGTATCTTTATTGGGTAAAAACCTGCAGATAATGTATTGTTATGCAGTGAATGGAAGATGTCCTTCTCCTGGTCATCTCTGGTTGACTGGGTGTAATGGAGAAATGGAAACCCAACTGCAAAGGCTTCCAGGATTTGACAAATGGATCATTGAGAGGGAACATAGATCATACATAGATGCTTTGCAGGACCAGAAGGAAAATTTGGTCTATCTCACAGCTGATTCAGAAACTGTGCTTGATGATCTTGATCTAAAGAAAATATATATCATTGGCGGGTTAGTTGATCGGAACAGATGGAAAGGGATTACCATGAAGAAAGCACAAGAACAGGGAATTCAAACAGCAAAACTTCCAATAGGAAGTTACTTGAAGATGTCTAGCTCTCAGGTATACTTCGGTCTTCACATGCATATCATTGTTATCCGCATTTCATAG ATGGAGGCCAGAGAAGAGGACCAGAGCGCCAAAATGGATCCTCCTTGTTCCCCTTCCGGCTGCAATCCTCCAGAGCCCCCCCTCTCCAAGAATGCAAGGAAGAAGCTACTGAAACAACAGCGTTACGAAACGAAGAAAGCGGAGAAGAAAGCTCAGGAAAAAGAGCAGAAGAAGAAAGATATTGAGCGCAAACGGAAGGAATGGGAGGAGACACTGGCGAGTGTTACGGAGGAGGAGAGAGCCAAGCTGATCGAGTCTAGGAAAAGCCTGAGGAAGGAGAGGATGGGGAAGAGGTCGGAGGAGAAGGAGAAGAAGATTGAGCGGCTCAACAGGGCTAAAGATTGTGGTCAGAAGATTGTCATCGACCTTGAATTTTCTGACCTCATGACCCCCTCGGAGATTCACAGTCTTGTTCAGCAGATAATGTATTGTTATGCAGTGAATGGAAGATGTCCTTCTCCTGGTCATCTCTGGTTGACTGGGTGTAATGGAGAAATGGAAACCCAACTGCAAAGGCTTCCAGGATTTGACAAATGGATCATTGAGAGGGAACATAGATCATACATAGATGCTTTGCAGGACCAGAAGGAAAATTTGGTCTATCTCACAGCTGATTCAGAAACTGTGCTTGATGATCTTGATCTAAAGAAAATATATATCATTGGCGGGTTAGTTGATCGGAACAGATGGAAAGGGATTACCATGAAGAAAGCACAAGAACAGGGAATTCAAACAGCAAAACTTCCAATAGGAAGTTACTTGAAGATGTCTAGCTCTCAGGTATACTTCGGTCTTCACATGCATATCATTGTTATCCGCATTTCATAG ATGGAGGCCAGAGAAGAGGACCAGAGCGCCAAAATGGATCCTCCTTGTTCCCCTTCCGGCTGCAATCCTCCAGAGCCCCCCCTCTCCAAGAATGCAAGGAAGAAGCTACTGAAACAACAGCGTTACGAAACGAAGAAAGCGGAGAAGAAAGCTCAGGAAAAAGAGCAGAAGAAGAAAGATATTGAGCGCAAACGGAAGGAATGGGAGGAGACACTGGCGAGTGTTACGGAGGAGGAGAGAGCCAAGCTGATCGAGTCTAGGAAAAGCCTGAGGAAGGAGAGGATGGGGAAGAGGTCGGAGGAGAAGGAGAAGAAGATTGAGCGGCTCAACAGGGCTAAAGATTGTGGTCAGAAGATTGTCATCGACCTTGAATTTTCTGACCTCATGACCCCCTCGGAGATTCACAGTCTTGTTCAGCAGATAATGTATTGTTATGCAGTGAATGGAAGATGTCCTTCTCCTGGTCATCTCTGGTTGACTGGGTGTAATGGAGAAATGGAAACCCAACTGCAAAGGCTTCCAGGATTTGACAAATGGATCATTGAGAGGGAACATAGATCATACATAGATGCTTTGCAGGACCAGAAGGAAAATTTGGTCTATCTCACAGCTGATTCAGAAACTGTGCTTGATGATCTTGATCTAAAGAAAATATATATCATTGGCGGGTTAGTTGATCGGAACAGATGGAAAGGGATTACCATGAAGAAAGCACAAGAACAGGGAATTCAAACAGCAAAACTTCCAATAGGAAGTTACTTGAAGATGTCTAGCTCTCAGGTATACTTCGGTCTTCACATGCATATCATTGTTATCCGCATTTCATAG MEAREEDQSAKMDPPCSPSGCNPPEPPLSKNARKKLLKQQRYETKKAEKKAQEKEQKKKDIERKRKEWEETLASVTEEERAKLIESRKSLRKERMGKRSEEKEKKIERLNRAKDCGQKIVIDLEFSDLMTPSEIHSLVQQIMYCYAVNGRCPSPGHLWLTGCNGEMETQLQRLPGFDKWIIEREHRSYIDALQDQKENLVYLTADSETVLDDLDLKKIYIIGGLVDRNRWKGITMKKAQEQGIQTAKLPIGSYLKMSSSQVYFGLHMHIIVIRIS Homology
BLAST of Carg26514 vs. NCBI nr
Match: KAG7019364.1 (trm10, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 527.7 bits (1358), Expect = 6.0e-146 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
BLAST of Carg26514 vs. NCBI nr
Match: KAG6583717.1 (hypothetical protein SDJN03_19649, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 499.2 bits (1284), Expect = 2.3e-137 Identity = 260/261 (99.62%), Postives = 260/261 (99.62%), Query Frame = 0
BLAST of Carg26514 vs. NCBI nr
Match: XP_022927615.1 (tRNA (guanine(9)-N1)-methyltransferase [Cucurbita moschata]) HSP 1 Score: 494.2 bits (1271), Expect = 7.3e-136 Identity = 257/261 (98.47%), Postives = 258/261 (98.85%), Query Frame = 0
BLAST of Carg26514 vs. NCBI nr
Match: XP_022973151.1 (tRNA (guanine(9)-N1)-methyltransferase [Cucurbita maxima]) HSP 1 Score: 492.3 bits (1266), Expect = 2.8e-135 Identity = 255/261 (97.70%), Postives = 259/261 (99.23%), Query Frame = 0
BLAST of Carg26514 vs. NCBI nr
Match: XP_023520714.1 (tRNA (guanine(9)-N1)-methyltransferase [Cucurbita pepo subsp. pepo]) HSP 1 Score: 492.3 bits (1266), Expect = 2.8e-135 Identity = 257/261 (98.47%), Postives = 258/261 (98.85%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy Swiss-Prot
Match: O14214 (tRNA (guanine(9)-N1)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=trm10 PE=1 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 2.2e-26 Identity = 83/240 (34.58%), Postives = 136/240 (56.67%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy Swiss-Prot
Match: Q8C1Z8 (tRNA methyltransferase 10 homolog A OS=Mus musculus OX=10090 GN=Trmt10a PE=2 SV=2) HSP 1 Score: 114.4 bits (285), Expect = 2.1e-24 Identity = 84/250 (33.60%), Postives = 134/250 (53.60%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy Swiss-Prot
Match: Q66JJ4 (tRNA methyltransferase 10 homolog A OS=Xenopus tropicalis OX=8364 GN=trmt10a PE=2 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 1.1e-22 Identity = 100/288 (34.72%), Postives = 152/288 (52.78%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy Swiss-Prot
Match: Q3MHI8 (tRNA methyltransferase 10 homolog A OS=Bos taurus OX=9913 GN=TRMT10A PE=2 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.9e-22 Identity = 82/250 (32.80%), Postives = 131/250 (52.40%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy Swiss-Prot
Match: Q4KLI2 (tRNA methyltransferase 10 homolog A OS=Rattus norvegicus OX=10116 GN=Trmt10a PE=1 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 4.3e-22 Identity = 92/275 (33.45%), Postives = 144/275 (52.36%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy TrEMBL
Match: A0A6J1EPG7 (tRNA (guanine(9)-N(1))-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111434383 PE=4 SV=1) HSP 1 Score: 494.2 bits (1271), Expect = 3.5e-136 Identity = 257/261 (98.47%), Postives = 258/261 (98.85%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy TrEMBL
Match: A0A6J1I7W5 (tRNA (guanine(9)-N(1))-methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111471663 PE=4 SV=1) HSP 1 Score: 492.3 bits (1266), Expect = 1.3e-135 Identity = 255/261 (97.70%), Postives = 259/261 (99.23%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy TrEMBL
Match: A0A0A0LYJ3 (SAM-dependent MTase TRM10-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G173210 PE=4 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 6.1e-120 Identity = 232/261 (88.89%), Postives = 243/261 (93.10%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy TrEMBL
Match: A0A5D3CW30 (tRNA (Guanine(9)-N1)-methyltransferase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00280 PE=4 SV=1) HSP 1 Score: 437.2 bits (1123), Expect = 5.1e-119 Identity = 229/261 (87.74%), Postives = 241/261 (92.34%), Query Frame = 0
BLAST of Carg26514 vs. ExPASy TrEMBL
Match: A0A1S3CL37 (tRNA (Guanine(9)-N1)-methyltransferase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502202 PE=4 SV=1) HSP 1 Score: 437.2 bits (1123), Expect = 5.1e-119 Identity = 229/261 (87.74%), Postives = 241/261 (92.34%), Query Frame = 0
BLAST of Carg26514 vs. TAIR 10
Match: AT5G47680.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 348.2 bits (892), Expect = 6.0e-96 Identity = 192/259 (74.13%), Postives = 215/259 (83.01%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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