Carg26448 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26448
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Carg_Chr11: 9678099 .. 9680009 (-)
RNA-Seq Expression	Carg26448
Synteny	Carg26448

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAACATCTCCCACAGACCCTTATCTTAAAATCATAAAACAAAGCTCACTACATACCTGAAACTTCCACATCTCAGAAGAAGCCATGGCTGCAACGGCTGCAACTTCTGGTGCTCTGCTTAATGGGTTAGGCTCACCCTTCCTCCATGGAGGTAGCAGAACCCAAACCTTGCTGGCCGGTGCCAGAGGCGGTGTCAATGTTGTCAGCTCTCGCAAGCTTGTCATCGTCGCTGCTGCTCAGCCCAAGAAGTCTTGGATCCCCGCCGTTAAGGGCGGCGGCAACTTCATCGACCCGGAATGGCTCGATGGCTCGTATGTCTCTCTCTTTACTGCTTTTGTTGTGAAATTTTCAGTCACTGTTTAGAACCTGCTGTTGGAAGAGGCATTTCAGTTTAAGAACAGGCATTTTATCACACTTTCTGAGCAATTAGTGTTTAGAATCAAGAGGAGACATTTCATCCAACACTTTCTAGGCACTTGCTGTTTTCCATAAACACTTTCTAACCGATATAGACAGTGTTAGGAATCACGATTCTACACAATAGTATGATATTGTCTACTTTCGGCATGAGCTCTTTTAAACTTCCCAAAAGACCTCGTACCAATGGAGATGTATTCCTTCCTTATGAACTCACGATCATTCCCTAAATTAGTCAATGTAGGACTCTCTCTCAACAATTCTCAACTATCCTCCCCTCAACAAAGTACACTATAGAGCCTCCCCTGAGGCCTATGGAGTTCTCGAACAGCCTCCCCTTAATCGAGACTCGACTCCTTATTTGGAGTCCTTGAACAAAGTATACCATTTGTTCGACATTTGAGTCACTTTTGACTACACCTTTGAGGCTCACAACCTTTTTGTTCGACATTTGAGGATCATATTGACATGGCTAAATTAAGAGCATGACTTGTTAGGAATTACGGCTCTCCACAATGGTATGAAAGTATCTACTTTGAACATAAGCTCTCGTGGCTTTGCTTTGGGCTTCTCCAAAAGGCTCATTCCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAACGTGGGACTCACTCCCAATAATCCTCAACATGACTCTTATACCAATGTTATGAATCACAACTCTCTGCAATAGTATGATATTATTCACTATAAGTATAAGCTCTCAAGACCCAAGACCCGTACCGATAGAGATGTATTCCTTATTTATAAACTCAGGATCATTCTTAACCATTCTGAACAATTACTCTTAAGAATACATGGAAGAGGCATTTAATCAAACAGTTTCTAGGCCAATTCAAAACTCTGAAAGAGACATTTCATCAAACAGTTCATAAGCAATTACCTGTTTGGTTTCTACAGACTACCAGGCGATTACGGCTTCGACCCACTGGGGTTGGGGAAGGATCCAGCATTTCTGAAATGGTACAGAGAAGCAGAGCTAATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCATCGGCCAGGCCTGGAGCGGGATCCCATGGTTCGAAGCCGGAGCCGATCCGTCCGCAATCGCTCCATTCTCCTTCGGATCACTGCTCGGAACACAGCTTCTACTAATGGGATGGGTCGAGAGCAAACGATGGGTAGATTTCTTCAACCCGGAGTCTCAATCCGTGGAATGGGCAACGCCATGGTCGAGGACCGCAGAGAACTTCGCAAACGCAACGGGAGAACAGGGGTACCCAGGAGGGAAATTCTTCGATCCATTGGGATTTGCAGGAACTCTCAAGGATGGAGTTTATATTCCAGACACGGAGAAATTGGAGAGATTGAAGCTGGCAGAGATCAAGCATGCGAGAATCGCCATGTTAGCTATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCATTGGGGGCTCTTGGATTGTAG

mRNA sequence

CACAACATCTCCCACAGACCCTTATCTTAAAATCATAAAACAAAGCTCACTACATACCTGAAACTTCCACATCTCAGAAGAAGCCATGGCTGCAACGGCTGCAACTTCTGGTGCTCTGCTTAATGGGTTAGGCTCACCCTTCCTCCATGGAGGTAGCAGAACCCAAACCTTGCTGGCCGGTGCCAGAGGCGGTGTCAATGTTGTCAGCTCTCGCAAGCTTGTCATCGTCGCTGCTGCTCAGCCCAAGAAGTCTTGGATCCCCGCCGTTAAGGGCGGCGGCAACTTCATCGACCCGGAATGGCTCGATGGCTCACTACCAGGCGATTACGGCTTCGACCCACTGGGGTTGGGGAAGGATCCAGCATTTCTGAAATGGTACAGAGAAGCAGAGCTAATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCATCGGCCAGGCCTGGAGCGGGATCCCATGGTTCGAAGCCGGAGCCGATCCGTCCGCAATCGCTCCATTCTCCTTCGGATCACTGCTCGGAACACAGCTTCTACTAATGGGATGGGTCGAGAGCAAACGATGGGTAGATTTCTTCAACCCGGAGTCTCAATCCGTGGAATGGGCAACGCCATGGTCGAGGACCGCAGAGAACTTCGCAAACGCAACGGGAGAACAGGGGTACCCAGGAGGGAAATTCTTCGATCCATTGGGATTTGCAGGAACTCTCAAGGATGGAGTTTATATTCCAGACACGGAGAAATTGGAGAGATTGAAGCTGGCAGAGATCAAGCATGCGAGAATCGCCATGTTAGCTATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCATTGGGGGCTCTTGGATTGTAG

Coding sequence (CDS)

ATGGCTGCAACGGCTGCAACTTCTGGTGCTCTGCTTAATGGGTTAGGCTCACCCTTCCTCCATGGAGGTAGCAGAACCCAAACCTTGCTGGCCGGTGCCAGAGGCGGTGTCAATGTTGTCAGCTCTCGCAAGCTTGTCATCGTCGCTGCTGCTCAGCCCAAGAAGTCTTGGATCCCCGCCGTTAAGGGCGGCGGCAACTTCATCGACCCGGAATGGCTCGATGGCTCACTACCAGGCGATTACGGCTTCGACCCACTGGGGTTGGGGAAGGATCCAGCATTTCTGAAATGGTACAGAGAAGCAGAGCTAATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCATCGGCCAGGCCTGGAGCGGGATCCCATGGTTCGAAGCCGGAGCCGATCCGTCCGCAATCGCTCCATTCTCCTTCGGATCACTGCTCGGAACACAGCTTCTACTAATGGGATGGGTCGAGAGCAAACGATGGGTAGATTTCTTCAACCCGGAGTCTCAATCCGTGGAATGGGCAACGCCATGGTCGAGGACCGCAGAGAACTTCGCAAACGCAACGGGAGAACAGGGGTACCCAGGAGGGAAATTCTTCGATCCATTGGGATTTGCAGGAACTCTCAAGGATGGAGTTTATATTCCAGACACGGAGAAATTGGAGAGATTGAAGCTGGCAGAGATCAAGCATGCGAGAATCGCCATGTTAGCTATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCATTGGGGGCTCTTGGATTGTAG

Protein sequence

MAATAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL

Homology

[Close]

BLAST of Carg26448 vs. NCBI nr
Match: XP_022927871.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita moschata] >KAG6588777.1 Chlorophyll a-b binding protein CP24 10A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022550.1 Chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 529.3 bits (1362), Expect = 1.9e-146
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAATAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPA 60
           MAATAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPA
Sbjct: 1   MAATAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPA 60

Query: 61  VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ 120
           VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ
Sbjct: 61  VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ 120

Query: 121 AWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 180
           AWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR
Sbjct: 121 AWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 180

Query: 181 TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML 240
           TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML
Sbjct: 181 TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML 240

Query: 241 IFYFEAGQGKTPLGALGL 259
           IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258

[Close]

BLAST of Carg26448 vs. NCBI nr
Match: XP_023531350.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 526.9 bits (1356), Expect = 9.5e-146
Identity = 257/258 (99.61%), Postives = 257/258 (99.61%), Query Frame = 0


Query: 1   MAATAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPA 60
           MAATAATSGALLNGLGSPFLHGGSRTQ LLAGARGGVNVVSSRKLVIVAAAQPKKSWIPA
Sbjct: 1   MAATAATSGALLNGLGSPFLHGGSRTQILLAGARGGVNVVSSRKLVIVAAAQPKKSWIPA 60

Query: 61  VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ 120
           VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ
Sbjct: 61  VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ 120

Query: 121 AWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 180
           AWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR
Sbjct: 121 AWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 180

Query: 181 TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML 240
           TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML
Sbjct: 181 TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML 240

Query: 241 IFYFEAGQGKTPLGALGL 259
           IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258

[Close]

BLAST of Carg26448 vs. NCBI nr
Match: XP_022988907.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 522.7 bits (1345), Expect = 1.8e-144
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 5   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 64
           AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG
Sbjct: 2   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 61

Query: 65  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
           GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG
Sbjct: 62  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 121

Query: 125 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 184
           IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 122 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 181

Query: 185 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 244
           FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 182 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 241

Query: 245 EAGQGKTPLGALGL 259
           EAGQGKTPLGALGL
Sbjct: 242 EAGQGKTPLGALGL 255

[Close]

BLAST of Carg26448 vs. NCBI nr
Match: XP_023550942.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.1 bits (1315), Expect = 5.4e-141
Identity = 244/254 (96.06%), Postives = 251/254 (98.82%), Query Frame = 0


Query: 5   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 64
           AATSGA+LNGLGSPFLHGGSRTQTLLAGARGGVNVV SRKLVIVAAAQPKKSWIPAVKGG
Sbjct: 2   AATSGAVLNGLGSPFLHGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKGG 61

Query: 65  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
           GN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWSG
Sbjct: 62  GNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121

Query: 125 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 184
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 122 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 181

Query: 185 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 244
           FANATGEQGYPGGKFFDPLGFAGT+KDGVYIPDTEKLERLKLAEIKHAR+AMLAMLIFYF
Sbjct: 182 FANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARLAMLAMLIFYF 241

Query: 245 EAGQGKTPLGALGL 259
           EAGQGKTPLGALG+
Sbjct: 242 EAGQGKTPLGALGV 255

[Close]

BLAST of Carg26448 vs. NCBI nr
Match: XP_022939277.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 510.8 bits (1314), Expect = 7.1e-141
Identity = 244/254 (96.06%), Postives = 251/254 (98.82%), Query Frame = 0


Query: 5   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 64
           AATSGA+LNGLGSPFLHGGSRTQTLLAGARGGVNVV SRKLVIVAAAQPKKSWIPAVKGG
Sbjct: 2   AATSGAVLNGLGSPFLHGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKGG 61

Query: 65  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
           GN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWSG
Sbjct: 62  GNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121

Query: 125 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 184
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 122 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 181

Query: 185 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 244
           FANATGEQGYPGGKFFDPLGFAGT+KDGVYIPDT+KLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 182 FANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLAEIKHARIAMLAMLIFYF 241

Query: 245 EAGQGKTPLGALGL 259
           EAGQGKTPLGALG+
Sbjct: 242 EAGQGKTPLGALGV 255

[Close]

BLAST of Carg26448 vs. ExPASy Swiss-Prot
Match: P27524 (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10A PE=3 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 2.9e-121
Identity = 211/257 (82.10%), Postives = 229/257 (89.11%), Query Frame = 0


Query: 5   AATSGALLNGLGSPFLHGGSRTQTLLA---GARGGVNVVSSRKLVIVAAAQPKKSWIPAV 64
           A TS A+LNGL S FL GG+++Q LLA    AR G      R  V+ AAA  KKSWIPAV
Sbjct: 2   ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAA--KKSWIPAV 61

Query: 65  KGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQA 124
           +GGGN +DPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF+GQA
Sbjct: 62  RGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 121

Query: 125 WSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 184
           WSGIPWFEAGADP AIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+T
Sbjct: 122 WSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKT 181

Query: 185 AENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLI 244
           AENFAN TGEQGYPGGKFFDPL  AGTL +GVY+PDTEKLERLK+AEIKHAR+AMLAMLI
Sbjct: 182 AENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLI 241

Query: 245 FYFEAGQGKTPLGALGL 259
           FYFEAGQGKTPLGALGL
Sbjct: 242 FYFEAGQGKTPLGALGL 256

[Close]

BLAST of Carg26448 vs. ExPASy Swiss-Prot
Match: P36494 (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 3.8e-121
Identity = 209/261 (80.08%), Postives = 235/261 (90.04%), Query Frame = 0


Query: 2   AATAATSGALLNGLGSPFLHGGSR-TQTLL---AGARGGVNVVSSRKLVIVAAAQPKKSW 61
           AAT+AT  A++NG  SPFL GG + +Q+LL   +    GV+  S + +V+ AAA PKKSW
Sbjct: 3   AATSAT--AIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 62

Query: 62  IPAVKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 121
           IPAVKGGGNF+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIF
Sbjct: 63  IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 122

Query: 122 IGQAWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 181
           +GQAW+GIPWFEAGADP A+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATP
Sbjct: 123 VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP 182

Query: 182 WSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAML 241
           WSRTAENF+N+TGEQGYPGGKFFDPL  AGT+ +GVY PDT+KLERLKLAEIKHAR+AML
Sbjct: 183 WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML 242

Query: 242 AMLIFYFEAGQGKTPLGALGL 259
           AMLIFYFEAGQGKTPLGALGL
Sbjct: 243 AMLIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of Carg26448 vs. ExPASy Swiss-Prot
Match: P27525 (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10B PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 1.1e-120
Identity = 210/259 (81.08%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 1   MAATAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAA-QPKKSWIP 60
           M  T+AT  A+LNGL S FL GG +TQ LL GA     V + ++ V+ AAA  PKKSWIP
Sbjct: 1   MTTTSAT--AVLNGLSSSFLTGGKKTQALL-GAHVTARVTTPKRFVVAAAAVAPKKSWIP 60

Query: 61  AVKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIG 120
           AVK GGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF+G
Sbjct: 61  AVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVG 120

Query: 121 QAWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 180
           QAWSGIPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS
Sbjct: 121 QAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWS 180

Query: 181 RTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAM 240
           +TAENFAN TGEQGYPGGKFFDPL  AGTL +GVY+PDTEKLERLKLAEIKH+R+AMLAM
Sbjct: 181 KTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAM 240

Query: 241 LIFYFEAGQGKTPLGALGL 259
           LIFYFEAGQGKTPLGALGL
Sbjct: 241 LIFYFEAGQGKTPLGALGL 256

[Close]

BLAST of Carg26448 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.2e-31
Identity = 77/183 (42.08%), Postives = 100/183 (54.64%), Query Frame = 0


Query: 70  PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW------S 129
           PEWLDGSLPGD+GFDPLGLG DP  LKW+ +AELIH RWAM AV GI I +         
Sbjct: 75  PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIE 134

Query: 130 GIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 189
              W++AG+           +L   Q++LMGW E +RW D   P S  +E   P      
Sbjct: 135 NFSWYDAGSREYFA---DSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------ 194

Query: 190 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 247
           +  N   + GYPGG +FD + +     + V +        L+  EIK+ R+AMLA L F 
Sbjct: 195 HKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV--------LRTKEIKNGRLAMLAFLGFC 240

[Close]

BLAST of Carg26448 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-30
Identity = 87/235 (37.02%), Postives = 118/235 (50.21%), Query Frame = 0


Query: 23  GSRTQTLLAGARGGVN----VVSSRKLVI--VAAAQPKKSWIPAVKGGGNFIDPEWLDGS 82
           G+   + L G R  V+     V SR + +  VAA   +  W P          PEWLDGS
Sbjct: 28  GATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFP------GSTPPEWLDGS 87

Query: 83  LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGI------PWFEA 142
           LPGD+GFDPLGLG DP  LKW  +AEL+H RWAM    GIFI +  + I       W+ A
Sbjct: 88  LPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTA 147

Query: 143 GADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 202
           G            +L   +L+L+GW E +RW D   P   + +   P      N    T 
Sbjct: 148 GEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFP-----NNKLTGT- 207

Query: 203 EQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFE 246
           + GYPGG +FDPLG+              K++ L+  EIK+ R+AMLA++  +F+
Sbjct: 208 DVGYPGGLWFDPLGWGS--------GSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 239

[Close]

BLAST of Carg26448 vs. ExPASy TrEMBL
Match: A0A6J1EIR2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111434638 PE=3 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 9.3e-147
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAATAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPA 60
           MAATAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPA
Sbjct: 1   MAATAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPA 60

Query: 61  VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ 120
           VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ
Sbjct: 61  VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ 120

Query: 121 AWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 180
           AWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR
Sbjct: 121 AWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 180

Query: 181 TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML 240
           TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML
Sbjct: 181 TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML 240

Query: 241 IFYFEAGQGKTPLGALGL 259
           IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258

[Close]

BLAST of Carg26448 vs. ExPASy TrEMBL
Match: A0A6J1JEC2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486120 PE=3 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 8.7e-145
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 5   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 64
           AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG
Sbjct: 2   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 61

Query: 65  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
           GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG
Sbjct: 62  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 121

Query: 125 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 184
           IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 122 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 181

Query: 185 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 244
           FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 182 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 241

Query: 245 EAGQGKTPLGALGL 259
           EAGQGKTPLGALGL
Sbjct: 242 EAGQGKTPLGALGL 255

[Close]

BLAST of Carg26448 vs. ExPASy TrEMBL
Match: A0A6J1FGC5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445242 PE=3 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 3.4e-141
Identity = 244/254 (96.06%), Postives = 251/254 (98.82%), Query Frame = 0


Query: 5   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 64
           AATSGA+LNGLGSPFLHGGSRTQTLLAGARGGVNVV SRKLVIVAAAQPKKSWIPAVKGG
Sbjct: 2   AATSGAVLNGLGSPFLHGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKGG 61

Query: 65  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
           GN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWSG
Sbjct: 62  GNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121

Query: 125 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 184
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 122 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 181

Query: 185 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 244
           FANATGEQGYPGGKFFDPLGFAGT+KDGVYIPDT+KLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 182 FANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLAEIKHARIAMLAMLIFYF 241

Query: 245 EAGQGKTPLGALGL 259
           EAGQGKTPLGALG+
Sbjct: 242 EAGQGKTPLGALGV 255

[Close]

BLAST of Carg26448 vs. ExPASy TrEMBL
Match: A0A6J1JU87 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489772 PE=3 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.3e-140
Identity = 244/254 (96.06%), Postives = 250/254 (98.43%), Query Frame = 0


Query: 5   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 64
           AATSGA+LNGLGSPFL GGSRTQTLLAGARGGVNVV SRKLVIVAAAQPKKSWIPAVKGG
Sbjct: 2   AATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKGG 61

Query: 65  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
           GN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWSG
Sbjct: 62  GNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121

Query: 125 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 184
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 122 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 181

Query: 185 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 244
           FANATGEQGYPGGKFFDPLGFAGT+KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 182 FANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 241

Query: 245 EAGQGKTPLGALGL 259
           EAGQGKTPLGALG+
Sbjct: 242 EAGQGKTPLGALGV 255

[Close]

BLAST of Carg26448 vs. ExPASy TrEMBL
Match: D1MWY9 (Chlorophyll a-b binding protein, chloroplastic OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitLhc PE=2 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 1.9e-139
Identity = 242/254 (95.28%), Postives = 247/254 (97.24%), Query Frame = 0


Query: 5   AATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGG 64
           AATSG +LNGLGSPFL GGSRTQTLLAGARGGVNVV SRKLV+VAAAQPKKSWIPAVKGG
Sbjct: 2   AATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKGG 61

Query: 65  GNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
           GN IDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWSG
Sbjct: 62  GNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121

Query: 125 IPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 184
           IPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPW RTAEN
Sbjct: 122 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWLRTAEN 181

Query: 185 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 244
           FAN TGEQGYPGGKFFDPLGFAGT+KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF
Sbjct: 182 FANTTGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 241

Query: 245 EAGQGKTPLGALGL 259
           EAGQGKTPLGALGL
Sbjct: 242 EAGQGKTPLGALGL 255

[Close]

BLAST of Carg26448 vs. TAIR 10
Match: AT1G15820.1 (light harvesting complex photosystem II subunit 6 )

HSP 1 Score: 434.1 bits (1115), Expect = 7.8e-122
Identity = 209/255 (81.96%), Postives = 227/255 (89.02%), Query Frame = 0


Query: 6   ATSGALLNGLGSPFLHGGSRTQTLLAGARG-GVNVVSSRKLVI-VAAAQPKKSWIPAVKG 65
           A SGA+L+GLGS FL GG R  T LA   G G   V  + L++  AAAQPKKSWIPAVKG
Sbjct: 4   AVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKG 63

Query: 66  GGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWS 125
           GGNF+DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF+GQAWS
Sbjct: 64  GGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS 123

Query: 126 GIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 185
           G+ WFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWS+TAE
Sbjct: 124 GVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAE 183

Query: 186 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 245
           NFAN TG+QGYPGG+FFDPLG AG  +DGVY PD EKLERLKLAEIKH+R+AM+AMLIFY
Sbjct: 184 NFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFY 243

Query: 246 FEAGQGKTPLGALGL 259
           FEAGQGKTPLGALGL
Sbjct: 244 FEAGQGKTPLGALGL 258

[Close]

BLAST of Carg26448 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 136.0 bits (341), Expect = 4.4e-32
Identity = 77/183 (42.08%), Postives = 100/183 (54.64%), Query Frame = 0


Query: 70  PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW------S 129
           PEWLDGSLPGD+GFDPLGLG DP  LKW+ +AELIH RWAM AV GI I +         
Sbjct: 75  PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIE 134

Query: 130 GIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 189
              W++AG+           +L   Q++LMGW E +RW D   P S  +E   P      
Sbjct: 135 NFSWYDAGSREYFA---DSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------ 194

Query: 190 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 247
           +  N   + GYPGG +FD + +     + V +        L+  EIK+ R+AMLA L F 
Sbjct: 195 HKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV--------LRTKEIKNGRLAMLAFLGFC 240

[Close]

BLAST of Carg26448 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-31
Identity = 96/252 (38.10%), Postives = 129/252 (51.19%), Query Frame = 0


Query: 11  LLNGLGSPFLHGG-------SRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKG 70
           L  G+   FLH         +R  + +  A GG+N            A  + +W+P +  
Sbjct: 5   LRGGITGGFLHHRRDASSVITRRISSVKAAGGGIN---------PTVAVERATWLPGLN- 64

Query: 71  GGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ--A 130
                 P +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM  V GI       
Sbjct: 65  -----PPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLR 124

Query: 131 WSGI----PWFEAGADPSAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEW 190
            +GI     W+EAGA       F F S   L+  Q LLMG+ E+KR++DF +P SQ+ E 
Sbjct: 125 TTGIRNLPVWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEG 184

Query: 191 ATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARI 247
           +  +   A   A    E GYPGG   +PLG A          D +     KL EIK+ R+
Sbjct: 185 SFFFGLEA---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRL 224

[Close]

BLAST of Carg26448 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-31
Identity = 96/252 (38.10%), Postives = 129/252 (51.19%), Query Frame = 0


Query: 11  LLNGLGSPFLHGG-------SRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKG 70
           L  G+   FLH         +R  + +  A GG+N            A  + +W+P +  
Sbjct: 5   LRGGITGGFLHHRRDASSVITRRISSVKAAGGGIN---------PTVAVERATWLPGLN- 64

Query: 71  GGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ--A 130
                 P +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM  V GI       
Sbjct: 65  -----PPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLR 124

Query: 131 WSGI----PWFEAGADPSAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEW 190
            +GI     W+EAGA       F F S   L+  Q LLMG+ E+KR++DF +P SQ+ E 
Sbjct: 125 TTGIRNLPVWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEG 184

Query: 191 ATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARI 247
           +  +   A   A    E GYPGG   +PLG A          D +     KL EIK+ R+
Sbjct: 185 SFFFGLEA---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRL 224

[Close]

BLAST of Carg26448 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-30
Identity = 91/256 (35.55%), Postives = 127/256 (49.61%), Query Frame = 0


Query: 1   MAATAATSGALLNGLGSPFLHGGSRTQ-----TLLAGARGGVNVVSSRKLVIVAAAQPKK 60
           MA++   S A+   + SP   GG + +     T+ A +R   +V +      VAA   + 
Sbjct: 1   MASSLCASSAIA-AISSPSFLGGKKLRLKKKLTVPAVSRPDASVRA------VAADPDRP 60

Query: 61  SWIPAVKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVG 120
            W P          PEWLDGSLPGD+GFDPLGL  DP  LKW  +AE++H RWAM    G
Sbjct: 61  IWFP------GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 120

Query: 121 IFIGQAWSGI------PWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 180
           IFI +  + I       W+ AG            +L   +L+L+GW E +RW D   P S
Sbjct: 121 IFIPEFLTKIGILNTPSWYTAGEQEYFT---DKTTLFVVELILIGWAEGRRWADIIKPGS 180

Query: 181 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEI 240
            + +   P      N    T + GYPGG +FDPLG+              KL+ L+  EI
Sbjct: 181 VNTDPVFP-----NNKLTGT-DVGYPGGLWFDPLGWGS--------GSPAKLKELRTKEI 226

Query: 241 KHARIAMLAMLIFYFE 246
           K+ R+AMLA++  +F+
Sbjct: 241 KNGRLAMLAVMGAWFQ 226

The following BLAST results are available for this feature:

BLAST of Carg26448 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927871.1	1.9e-146	100.00	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita moschata...	[more]
XP_023531350.1	9.5e-146	99.61	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022988907.1	1.8e-144	100.00	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima]	[more]
XP_023550942.1	5.4e-141	96.06	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022939277.1	7.1e-141	96.06	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita moschata...	[more]

BLAST of Carg26448 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27524	2.9e-121	82.10	Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum ...	[more]
P36494	3.8e-121	80.08	Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562...	[more]
P27525	1.1e-120	81.08	Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum ...	[more]
Q8LCQ4	6.2e-31	42.08	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
P13869	1.4e-30	37.02	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of Carg26448 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIR2	9.3e-147	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JEC2	8.7e-145	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FGC5	3.4e-141	96.06	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JU87	1.3e-140	96.06	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
D1MWY9	1.9e-139	95.28	Chlorophyll a-b binding protein, chloroplastic OS=Citrullus lanatus subsp. vulga...	[more]

BLAST of Carg26448 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15820.1	7.8e-122	81.96	light harvesting complex photosystem II subunit 6	[more]
AT1G19150.1	4.4e-32	42.08	photosystem I light harvesting complex gene 6	[more]
AT1G45474.1	1.7e-31	38.10	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	1.7e-31	38.10	photosystem I light harvesting complex gene 5	[more]
AT3G61470.1	1.9e-30	35.55	photosystem I light harvesting complex gene 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 70..246 e-value: 4.8E-48 score: 163.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 70..257 e-value: 1.2E-53 score: 183.8
None	No IPR available	PANTHER	PTHR21649:SF107	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 4..258
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 67..258
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 4..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26448-RA	Carg26448-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding