Carg26350 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26350
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr15: 5443199 .. 5443681 (+)
RNA-Seq Expression	Carg26350
Synteny	Carg26350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCAATCTCCTCCGCCAATTCCGCTCCCTTCCTCCACTTCCATCCCATCTCCTCCTCCTCCTCTCGCCGCCGCCGCCGCCGGCCACCACTCTTCACTGTAATGGCCTCATCAAGAGGAGCCGACAGCAACAGCAACAGCAACAACAATAACAACAATAACTACTATGCGAGCGGGAAGCTTGTGGACGAGAGCATGATCGTACTCCGGAAACGGATCCACGAAATCAAGATGGTCGAGCGGAGCCACGAACCCCCTTCCGATTGGCTCGACTGGGAGAAACGCTGCTACTCCGACTATGATTCACATATCTGTGAGGCTTTGGGCTATCTCCAATCCCACTTGATGAACACCAGGCCTAGCGTTGCCTTGGGAATTCTCCTTCTTATTACTCTCAGTGTTCCTCTCTCCTCCGCAGTCATTCTCCACCGCTTCATCGACATCGCCGCCGCGCTTCTCGCCGGAGTCCGTCTTACTTAA

mRNA sequence

ATGAAATCAATCTCCTCCGCCAATTCCGCTCCCTTCCTCCACTTCCATCCCATCTCCTCCTCCTCCTCTCGCCGCCGCCGCCGCCGGCCACCACTCTTCACTGTAATGGCCTCATCAAGAGGAGCCGACAGCAACAGCAACAGCAACAACAATAACAACAATAACTACTATGCGAGCGGGAAGCTTGTGGACGAGAGCATGATCGTACTCCGGAAACGGATCCACGAAATCAAGATGGTCGAGCGGAGCCACGAACCCCCTTCCGATTGGCTCGACTGGGAGAAACGCTGCTACTCCGACTATGATTCACATATCTGTGAGGCTTTGGGCTATCTCCAATCCCACTTGATGAACACCAGGCCTAGCGTTGCCTTGGGAATTCTCCTTCTTATTACTCTCAGTGTTCCTCTCTCCTCCGCAGTCATTCTCCACCGCTTCATCGACATCGCCGCCGCGCTTCTCGCCGGAGTCCGTCTTACTTAA

Coding sequence (CDS)

ATGAAATCAATCTCCTCCGCCAATTCCGCTCCCTTCCTCCACTTCCATCCCATCTCCTCCTCCTCCTCTCGCCGCCGCCGCCGCCGGCCACCACTCTTCACTGTAATGGCCTCATCAAGAGGAGCCGACAGCAACAGCAACAGCAACAACAATAACAACAATAACTACTATGCGAGCGGGAAGCTTGTGGACGAGAGCATGATCGTACTCCGGAAACGGATCCACGAAATCAAGATGGTCGAGCGGAGCCACGAACCCCCTTCCGATTGGCTCGACTGGGAGAAACGCTGCTACTCCGACTATGATTCACATATCTGTGAGGCTTTGGGCTATCTCCAATCCCACTTGATGAACACCAGGCCTAGCGTTGCCTTGGGAATTCTCCTTCTTATTACTCTCAGTGTTCCTCTCTCCTCCGCAGTCATTCTCCACCGCTTCATCGACATCGCCGCCGCGCTTCTCGCCGGAGTCCGTCTTACTTAA

Protein sequence

MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASGKLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT

Homology

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: KAG7016757.1 (hypothetical protein SDJN02_21867, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.8 bits (782), Expect = 2.1e-79
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASG 60
           MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASG
Sbjct: 1   MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASG 60

Query: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120
           KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR
Sbjct: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120

Query: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 160

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: KAG6579243.1 (hypothetical protein SDJN03_23691, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-75
Identity = 157/160 (98.12%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASG 60
           MKSISSANSAPFLHFHPI SSSSRRRRRRPPLFTVMASSRGAD  SNSNNNNNNNYYASG
Sbjct: 1   MKSISSANSAPFLHFHPI-SSSSRRRRRRPPLFTVMASSRGAD--SNSNNNNNNNYYASG 60

Query: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120
           KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR
Sbjct: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120

Query: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 157

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: XP_022939420.1 (uncharacterized protein LOC111445338 [Cucurbita moschata])

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-72
Identity = 153/160 (95.62%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASG 60
           MKSISSANSAPFLHFHPISSSS  RRRRRPPLFTVMASSRGADSNS    +NNNNYYASG
Sbjct: 1   MKSISSANSAPFLHFHPISSSS--RRRRRPPLFTVMASSRGADSNS----SNNNNYYASG 60

Query: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120
           KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR
Sbjct: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120

Query: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 154

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: XP_022993164.1 (uncharacterized protein LOC111489262 [Cucurbita maxima])

HSP 1 Score: 275.8 bits (704), Expect = 2.4e-70
Identity = 149/160 (93.12%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASG 60
           MKSISSANSAPFLHFHPIS SS  RRRRR PLFTV+ASSRGAD  S+S+NNNNNNYYASG
Sbjct: 1   MKSISSANSAPFLHFHPISPSS--RRRRRLPLFTVIASSRGAD--SSSSNNNNNNYYASG 60

Query: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120
           KLVDESMIVLRKRIHEIKMVE+SHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR
Sbjct: 61  KLVDESMIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120

Query: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           PSV+LGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 121 PSVSLGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 156

[Close]

BLAST of Carg26350 vs. NCBI nr
Match: XP_023551441.1 (uncharacterized protein LOC111809250 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.6 bits (592), Expect = 2.3e-57
Identity = 120/125 (96.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 36  MASSRGADSNSNSNNNNNNNYYASGKLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEK 95
           MASSRGADS+S++NNNNNNNYYASGKLVDESMIVLRKRIHE+KMVERSHEPPS+WLDWEK
Sbjct: 1   MASSRGADSSSSNNNNNNNNYYASGKLVDESMIVLRKRIHEMKMVERSHEPPSNWLDWEK 60

Query: 96  RCYSDYDSHICEALGYLQSHLMNTRPSVALGILLLITLSVPLSSAVILHRFIDIAAALLA 155
           RCYSDYDSHICEALGYLQSHLMNTRPSVALGILLLITLSVPLSSAVILHRFIDIAAALLA
Sbjct: 61  RCYSDYDSHICEALGYLQSHLMNTRPSVALGILLLITLSVPLSSAVILHRFIDIAAALLA 120

Query: 156 GVRLT 161
           GVRLT
Sbjct: 121 GVRLT 125

[Close]

BLAST of Carg26350 vs. ExPASy TrEMBL
Match: A0A6J1FMN3 (uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC111445338 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.2e-73
Identity = 153/160 (95.62%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASG 60
           MKSISSANSAPFLHFHPISSSS  RRRRRPPLFTVMASSRGADSNS    +NNNNYYASG
Sbjct: 1   MKSISSANSAPFLHFHPISSSS--RRRRRPPLFTVMASSRGADSNS----SNNNNYYASG 60

Query: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120
           KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR
Sbjct: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120

Query: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 154

[Close]

BLAST of Carg26350 vs. ExPASy TrEMBL
Match: A0A6J1JZG1 (uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.1e-70
Identity = 149/160 (93.12%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MKSISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASG 60
           MKSISSANSAPFLHFHPIS SS  RRRRR PLFTV+ASSRGAD  S+S+NNNNNNYYASG
Sbjct: 1   MKSISSANSAPFLHFHPISPSS--RRRRRLPLFTVIASSRGAD--SSSSNNNNNNYYASG 60

Query: 61  KLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120
           KLVDESMIVLRKRIHEIKMVE+SHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR
Sbjct: 61  KLVDESMIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTR 120

Query: 121 PSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 161
           PSV+LGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT
Sbjct: 121 PSVSLGILLLITLSVPLSSAVILHRFIDIAAALLAGVRLT 156

[Close]

BLAST of Carg26350 vs. ExPASy TrEMBL
Match: A0A6J1JRY7 (uncharacterized protein LOC111487016 OS=Cucurbita maxima OX=3661 GN=LOC111487016 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.2e-48
Identity = 112/157 (71.34%), Postives = 128/157 (81.53%), Query Frame = 0


Query: 3   SISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASGKL 62
           SI S +SAP L F PI S SS RRRR PP FTV ASSR  +        ++N+YYA GKL
Sbjct: 9   SIPSTHSAPLL-FPPI-SPSSHRRRRPPPAFTVTASSRPKE------QADSNSYYADGKL 68

Query: 63  VDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPS 122
           VDESMIVLRKRIHEIK  E++H+PP DW DWEKRCYS+YDS+ICEALGYLQSHLMNTRPS
Sbjct: 69  VDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPS 128

Query: 123 VALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRL 160
           VALG+L L+TLSVP+SSAV+LHRFI+IA  LLAG+RL
Sbjct: 129 VALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 157

[Close]

BLAST of Carg26350 vs. ExPASy TrEMBL
Match: A0A6J1GM73 (uncharacterized protein LOC111455246 OS=Cucurbita moschata OX=3662 GN=LOC111455246 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.2e-48
Identity = 111/157 (70.70%), Postives = 129/157 (82.17%), Query Frame = 0


Query: 3   SISSANSAPFLHFHPISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASGKL 62
           SI S +SAP L F PI S S+ RRRRRPP FTV ASS+  +        ++N+YYA GKL
Sbjct: 9   SIPSTHSAPLL-FPPI-SPSAHRRRRRPPAFTVTASSQPKE------QADSNSYYADGKL 68

Query: 63  VDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPS 122
           VDESMIVLRKRIHEIK  E++H+PP DW DWEKRCYS+YDS+ICEALGYLQSHLMNTRPS
Sbjct: 69  VDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPS 128

Query: 123 VALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRL 160
           VALG+L L+TLSVP+SSAV+LHRFI+IA  LLAG+RL
Sbjct: 129 VALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRL 157

[Close]

BLAST of Carg26350 vs. ExPASy TrEMBL
Match: A0A0A0KPI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 7.5e-46
Identity = 106/154 (68.83%), Postives = 121/154 (78.57%), Query Frame = 0


Query: 4   ISSANSAPFLHFHPISSSSSRRRRRRP-PLFTVMASSRGADSNSNSNNNNNNNYYASGKL 63
           + S NS  F      S ++    RR+P P  TV AS   A  ++N+N NNNNNYYA GK+
Sbjct: 1   MESINSLSFSTPSLFSPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNNNYYAGGKV 60

Query: 64  VDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPS 123
           VDESMIVLRKRIHEIKM E+  EPP+DWLDWEKR YSDYDSHICEALGYLQSHLMNTRPS
Sbjct: 61  VDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHLMNTRPS 120

Query: 124 VALGILLLITLSVPLSSAVILHRFIDIAAALLAG 157
           VALG+LLLI +SVPLSSA++LHRF+ IA ALLAG
Sbjct: 121 VALGMLLLIIISVPLSSALLLHRFLHIAVALLAG 154

[Close]

BLAST of Carg26350 vs. TAIR 10
Match: AT2G01300.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 6.7e-31
Identity = 76/153 (49.67%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 5   SSANSAPFLHFHP--ISSSSSRRRRRRPPLFTVMASSRGADSNSNSNNNNNNNYYASGKL 64
           SS  S   L FHP  +S  +   ++++  +    A+S G D           +YY  G+L
Sbjct: 7   SSPPSISPLRFHPLVLSQRAIIPKKKKMTMRVSAAASSGKD-----------HYYGGGRL 66

Query: 65  VDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPS 124
           VDE+MIVLRKRIHE+KMVER++EPPS W+DWEKR Y+ YDS IC+++G LQS LMN+RP+
Sbjct: 67  VDENMIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYDSVICDSVGLLQSFLMNSRPT 126

Query: 125 VALGILLLITLSVPLSSAVILHRFIDIAAALLA 156
           VA+  LL + +SVP+SS VI  R ID+   LLA
Sbjct: 127 VAIATLLFLLVSVPVSSTVIAFRLIDLLHWLLA 148

[Close]

BLAST of Carg26350 vs. TAIR 10
Match: AT1G15010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 6.3e-29
Identity = 62/105 (59.05%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 55  NYYASGKLVDESMIVLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQS 114
           +YY  G+ VDE+M+VLRKRIHE+KMVER+ EPPS W+ WEKR Y +YD+ IC+AL  LQ+
Sbjct: 37  DYYRGGRTVDENMVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQT 96

Query: 115 HLMNTRPSVALGILLLITLSVPLSSAVILHRFIDIAAALLAGVRL 160
            LMN+RPSVA G  LL+ +SVP+SSAV   R +D+A  LL  V +
Sbjct: 97  FLMNSRPSVAFGTCLLLLVSVPVSSAVFAFRILDLALWLLDAVHV 141

The following BLAST results are available for this feature:

BLAST of Carg26350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016757.1	2.1e-79	100.00	hypothetical protein SDJN02_21867, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6579243.1	4.2e-75	98.13	hypothetical protein SDJN03_23691, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022939420.1	1.5e-72	95.63	uncharacterized protein LOC111445338 [Cucurbita moschata]	[more]
XP_022993164.1	2.4e-70	93.13	uncharacterized protein LOC111489262 [Cucurbita maxima]	[more]
XP_023551441.1	2.3e-57	96.00	uncharacterized protein LOC111809250 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg26350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FMN3	7.2e-73	95.63	uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC1114453...	[more]
A0A6J1JZG1	1.1e-70	93.13	uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262...	[more]
A0A6J1JRY7	1.2e-48	71.34	uncharacterized protein LOC111487016 OS=Cucurbita maxima OX=3661 GN=LOC111487016...	[more]
A0A6J1GM73	1.2e-48	70.70	uncharacterized protein LOC111455246 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A0A0KPI5	7.5e-46	68.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1	[more]

BLAST of Carg26350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01300.1	6.7e-31	49.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15010.1	6.3e-29	59.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..56
None	No IPR available	PANTHER	PTHR33782:SF13	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT	coord: 17..158
None	No IPR available	PANTHER	PTHR33782	OS01G0121600 PROTEIN	coord: 17..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26350-RA	Carg26350-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane