
Carg26300 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTACATCCCTCAGCTGGTCTACCGTCTCCACATTAACATTTCATCCTCATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTTCATAATTTTACCCCGAAAGCTTATACTGAATTTTATAGGCATTATCTGTTTGTTTTTTTAGTTGCCGAGGAACTGTGCGAGAAAACAATCAAGTAAAAATATGTTTTTCTTTACATGGTCTGCTCGAATAGAAACTTCCCTAGTCTCGAACAATATATTATATTACAGCAAGATTGGAGAAAAGAATCTTGTTAAAATTCACAAACAGACATACAGAACATGTTTAAGGGTGAGAACCTTGTTAGAAATTTCATTTTTTAATGAACCAAAATATTCCTTCCATGAAACATACATAATACCTTTTCACTCGTGATAAACTCAAGATAATGGAAGATTGTACGTTGATTAGCGGGTAGATGAAAATATAACGTGAAAAGTAAATATGAAGCTGACAATTATACCTTCTTAATAACTGATAATCAGTTATCAGGTTTTCCTTACTTCTAATTTGAATCGACATGAATTGGTATATGTTCTGTGTTTTCATGGCAATATGATAACTACTTTCGTGTATCAACTCCTGGCTAAATCGTTTTAATTGGATCAATGCATTTGATATTTACATACGAGACCCAAAATGTTGAATCTTTCCAAGTACACTGACAACGACGGGAAGCTTTCAAAAACATTACAGCAGAAAGAAAAATGATATTCGAATTAGGTTTCAGTTTATTCTATGTGCCCTTTCTTATCTTTCTTTGTGGATTTGGGATTTGACTTTCTACGGCCTCTGCAAATAACTAGGGGAAGACTTGGTTAATTAATGCGCTCATCTTTCAGTTTTATTTATAGGAGGAGTAGTCAGTTGGACGTTAGGCAGTAGGGCCCTTGAGGTAATTCCGTTTTGATTGGTAGTAGGTGATGTGGAGGAAAAAGGTACTGTGTTTAGTAGTTTCATGTTGGGAGAGATTCAAGCCTCTCGCATTGCTATTTGATCCTCATTGGAATTAGCAAACTTGATTTCTGTTGGAAATTTTATCGACATTTGTTCACATAATATTTGTTAAGGTCTTCTTCCATTTGGTTACTTATTGGAGTCATGATTGTAATCTATATTCTTCTCTTTGATCTTTTCCATTTTGACTAGTATTCAATGCATAATATTATGACAATTGATATCAAAAGTAATGTCCAATGAGACCTAGTGGATGATCAGCAGCTTTTAACCGGTAAAAGCAGTGCTTTCCTCAATGTAGGGTTGGTTGCCAGTGTTCATGAGGTGGTCTCATTAGGCACGTTTCAATACAATATATGGCTCATGTTTTTGTTTTACAATCACACTTTGCTCCTATGATACAATATATGACTTCTATTTTTTGTCCCAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTATGCTTTGGTCTGGACTAAATAGTTTAGAGTTCTTGCTATGTTTCAAATATGCAGTTTGCATGCTTTATTTTGTTAGATCATGTAGAAATAAAGCAGATAAAGAAACAAATGACATTTTGTTCGTGGATGTTTCCAAAAGCTTAAAATACAAGAAACTTACGAAATGAATTGGACAACTCTAGCCCTAGAAAATAATTGGATAATAGGTACCCGACTAATATTGTGAGATCCCACCTCGGTTGGGGAGGAGAACTAAATATTCTTTATAAGAGTGTAGAAACCTTTTCCTAACAAACGCGTTTTAAAAATCTGGAGAGGAAACCCGGAAGAGAGTTCAAAGAGGACAATATATGTTAACCATGGGTTTGAGTTGTTACATGTATATATAGCCTTCAGATAAAAAGGATTACAAAGATGGGAAAGAAATTTGAGGTATCCCTCCTTTAACTCTCTCAATTCCAGTTCAAGAGAAACCGTGTAAAATCACATAAATAAATGGTAGCAATTGGCAGAAACCTCTGGCTTTGCACCTCAATCTTTGCCAAAATACTTGCCTGCCCAACTCCCTTCATAACGACCGGATCTAATGAACTTCCTAGCCAATGACTACATAATAACATTTGTTGCATGCCTCCTCAAGTTGCTGCCCATGTGATCAAGTAATAGCCTCCATTTAACAACTATCTCTTTCCATATAAGGGACAGACTTGAATTGTGATTGAGGTCATTAAGCAATTTCATATATACATTACTAATACTGAAGCTTCTCTTAATAATACTTTCGCTGTATGTCATGTGGTACTGGCGTGTCCATTGAAGATCTTTGTGGGCTATCATGCTCTTCTGCGACTGTTTGTACAGAAGAAATGACACAGTTGTAAATGGAACTTATCTTCTGGTGTTGCCAAAGTAGCATACTGGACTCTATGGCTGTGTTTTTGTGTTGCTCAACTATAATCTTGAGTAAGACGTCGTAAATGGAACCACATTTGAAATACGTTGCTGCATGATAGCACCTTGAGTAAGATGTGGTAACTCTGTGGCCCATGGCCTTGCTTTGGCAGTCCTCCACTTCGGCCCTTTCAATGGTTGTCTTATATCCTTTTGGATTCAGGATAGTTGTATCTGTTGGCCAGGCTCTTGGGTTCAATATTATATTCCCTTCACAAAAAATAAACAAAAGTTGAAAATTGCATCTGACCTAATTTTCTGTTTTCCATGACACTTTACCTTCATTGCCCAGCCATACAAAATCATCGCATGCTTTTTTCCTTTGCCCACCCACTTCTCATTTTGAGATGTTGTGCAGGCTACTTTGTTAGACCTCCAATCCAGAAGGTTTGTTCAAGGAAGAACAAAACTGGAATATGGTTGTTTCTAACGTTTAGAAGTATCAGCTTCAGTTAGTTAGTCGGTTTATTTTTTCTTTTAAATTTTTATTTGAGTATTTTGAATTAGCGAGTGATAACTTATTGAGTTAATTATATAACTTCTTAGTTTTGTTTGTATGCAGTGTTTTTGTAAATGCCGGGCATTGTTTTTTTTTTTTCCTTATGTTGTGTGGCTTCTTGAAAAGAATGTGGAGTGATTAATGATCCTCTCAAATGGGGACTCCCATCACACTTTTGATGTCAACAAGGCTTACATCTATTGTCTATAGAGATGTGATGCTTGCCCAGTTTAAAATTGTTCTTTATTTTAAACAATTATTTAAGCTATCTTCTGTCATTGAAGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGATGAATGTGTGCTATTGTTGATGCTGAGCTGTGGTCTGAATTTGTTTTGATCAAGAAAGATGGATGAATGATTAAATCAATTCTTCATGGTTCGGTGACCTACATGAAGGAAAAATGTACAGATTGTCAATGTAATAGATAGCATGTCCTGGACGCACTGCACAGTTTTTAAGAATGAGAAGAATCGATGATCATTGAAGTGAACCTTCACTTTATTGACTTGCAGCTCTATTATGTTTGTGGTTATGGATAATGGATACTCAAGGCACCATGGAATTTCTTGTATACGTTCGTTCGAGAACGTCGAATGGTCGAATGGGAATATTGATAATGTTTCAAAGTAATATAGGATTGAAAAGTTTAAACTGAT ATTTTACATCCCTCAGCTGGTCTACCGTCTCCACATTAACATTTCATCCTCATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGATGAATGTGTGCTATTGTTGATGCTGAGCTGTGGTCTGAATTTGTTTTGATCAAGAAAGATGGATGAATGATTAAATCAATTCTTCATGGTTCGGTGACCTACATGAAGGAAAAATGTACAGATTGTCAATGTAATAGATAGCATGTCCTGGACGCACTGCACAGTTTTTAAGAATGAGAAGAATCGATGATCATTGAAGTGAACCTTCACTTTATTGACTTGCAGCTCTATTATGTTTGTGGTTATGGATAATGGATACTCAAGGCACCATGGAATTTCTTGTATACGTTCGTTCGAGAACGTCGAATGGTCGAATGGGAATATTGATAATGTTTCAAAGTAATATAGGATTGAAAAGTTTAAACTGAT ATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGA MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKRGS Homology
BLAST of Carg26300 vs. NCBI nr
Match: KAG7024277.1 (Protein DCL-like, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 404.8 bits (1039), Expect = 4.1e-109 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
BLAST of Carg26300 vs. NCBI nr
Match: XP_022936820.1 (protein DCL homolog, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 403.3 bits (1035), Expect = 1.2e-108 Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0
BLAST of Carg26300 vs. NCBI nr
Match: XP_023536078.1 (protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 396.4 bits (1017), Expect = 1.5e-106 Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0
BLAST of Carg26300 vs. NCBI nr
Match: XP_022977112.1 (protein DCL homolog, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 389.0 bits (998), Expect = 2.4e-104 Identity = 189/196 (96.43%), Postives = 193/196 (98.47%), Query Frame = 0
BLAST of Carg26300 vs. NCBI nr
Match: XP_022135338.1 (protein DCL, chloroplastic isoform X1 [Momordica charantia]) HSP 1 Score: 354.0 bits (907), Expect = 8.4e-94 Identity = 168/196 (85.71%), Postives = 182/196 (92.86%), Query Frame = 0
BLAST of Carg26300 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 3.1e-30 Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0
BLAST of Carg26300 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 4.4e-29 Identity = 64/174 (36.78%), Postives = 96/174 (55.17%), Query Frame = 0
BLAST of Carg26300 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0
BLAST of Carg26300 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.1e-06 Identity = 36/110 (32.73%), Postives = 56/110 (50.91%), Query Frame = 0
BLAST of Carg26300 vs. ExPASy TrEMBL
Match: A0A6J1FET0 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443290 PE=4 SV=1) HSP 1 Score: 403.3 bits (1035), Expect = 5.8e-109 Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0
BLAST of Carg26300 vs. ExPASy TrEMBL
Match: A0A6J1IHJ1 (protein DCL homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477278 PE=4 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 1.1e-104 Identity = 189/196 (96.43%), Postives = 193/196 (98.47%), Query Frame = 0
BLAST of Carg26300 vs. ExPASy TrEMBL
Match: A0A6J1C4J4 (protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007322 PE=4 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 4.1e-94 Identity = 168/196 (85.71%), Postives = 182/196 (92.86%), Query Frame = 0
BLAST of Carg26300 vs. ExPASy TrEMBL
Match: A0A6J1FNQ4 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445919 PE=4 SV=1) HSP 1 Score: 342.0 bits (876), Expect = 1.6e-90 Identity = 162/196 (82.65%), Postives = 178/196 (90.82%), Query Frame = 0
BLAST of Carg26300 vs. ExPASy TrEMBL
Match: A0A6J1J4G4 (protein DCL homolog, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481165 PE=4 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 3.0e-89 Identity = 159/196 (81.12%), Postives = 177/196 (90.31%), Query Frame = 0
BLAST of Carg26300 vs. TAIR 10
Match: AT3G46630.1 (Protein of unknown function (DUF3223) ) HSP 1 Score: 225.3 bits (573), Expect = 4.2e-59 Identity = 121/210 (57.62%), Postives = 150/210 (71.43%), Query Frame = 0
BLAST of Carg26300 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) ) HSP 1 Score: 133.3 bits (334), Expect = 2.2e-31 Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0
BLAST of Carg26300 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) ) HSP 1 Score: 132.1 bits (331), Expect = 4.8e-31 Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0
BLAST of Carg26300 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B ) HSP 1 Score: 118.2 bits (295), Expect = 7.2e-27 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0
BLAST of Carg26300 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A ) HSP 1 Score: 53.5 bits (127), Expect = 2.2e-07 Identity = 36/110 (32.73%), Postives = 56/110 (50.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|