Carg26259 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26259
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Poly(A)-specific ribonuclease
Location	Carg_Chr18: 7566323 .. 7567165 (-)
RNA-Seq Expression	Carg26259
Synteny	Carg26259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGCCACGATCTCAACGACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTCGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGCACCGATGATAGCCGATTCATTTGGGAGTTTAACTTCATGGATTTCGATCTAGCGCGTGACATCTACGCGCCTGATTCAATCGACCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGTGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAGAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGCGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAATGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTCTTGTATGGATTGGAGGCGTTCTGA

mRNA sequence

ATGGTTAGCCACGATCTCAACGACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTCGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGCACCGATGATAGCCGATTCATTTGGGAGTTTAACTTCATGGATTTCGATCTAGCGCGTGACATCTACGCGCCTGATTCAATCGACCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGTGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAGAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGCGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAATGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTCTTGTATGGATTGGAGGCGTTCTGA

Coding sequence (CDS)

ATGGTTAGCCACGATCTCAACGACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTCGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGCACCGATGATAGCCGATTCATTTGGGAGTTTAACTTCATGGATTTCGATCTAGCGCGTGACATCTACGCGCCTGATTCAATCGACCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGTGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAGAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGCGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAATGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTCTTGTATGGATTGGAGGCGTTCTGA

Protein sequence

MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

Homology

[Close]

BLAST of Carg26259 vs. NCBI nr
Match: KAG7012717.1 (putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 577.0 bits (1486), Expect = 8.7e-161
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
           ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Carg26259 vs. NCBI nr
Match: XP_022945861.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 572.8 bits (1475), Expect = 1.6e-159
Identity = 278/280 (99.29%), Postives = 279/280 (99.64%), Query Frame = 0


Query: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
           ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Carg26259 vs. NCBI nr
Match: XP_022967098.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 568.5 bits (1464), Expect = 3.1e-158
Identity = 275/280 (98.21%), Postives = 278/280 (99.29%), Query Frame = 0


Query: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
           +LNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD
Sbjct: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILTQK LPNR+DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC
Sbjct: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Carg26259 vs. NCBI nr
Match: XP_023541056.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 563.5 bits (1451), Expect = 1.0e-156
Identity = 277/281 (98.58%), Postives = 278/281 (98.93%), Query Frame = 0


Query: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNR-SSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
           ALNR SSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR
Sbjct: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           DIYAPDSIDLLRRQGIDFDRNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFAYL
Sbjct: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK
Sbjct: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281

[Close]

BLAST of Carg26259 vs. NCBI nr
Match: XP_038877224.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 493.8 bits (1270), Expect = 9.7e-136
Identity = 239/280 (85.36%), Postives = 259/280 (92.50%), Query Frame = 0


Query: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MV HDLN N+ KSIKIREVWASNLESEFQLIRD ID FPCVSMDTEFPGIVF  P  PFN
Sbjct: 1   MVIHDLNINN-KSIKIREVWASNLESEFQLIRDLIDQFPCVSMDTEFPGIVFADPARPFN 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
                 SDHY+LLKSNVDAL+LIQIGITLSDSDGNLPDLGTDD+RFIWEFNFMDFD+ARD
Sbjct: 61  -FQSQPSDHYRLLKSNVDALHLIQIGITLSDSDGNLPDLGTDDTRFIWEFNFMDFDVARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           ++APDSI+LLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+
Sbjct: 121 LHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNNSVSWVTFHSAYDFGYLV 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILTQ+ LP+R+DEFLGVLRV FGDNVYD+KY+MRFC+SLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQRRLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDT+FVQNE++KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTYFVQNEMQKHAGVLYGLEVF 278

[Close]

BLAST of Carg26259 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.4e-105
Identity = 186/270 (68.89%), Postives = 225/270 (83.33%), Query Frame = 0


Query: 14  IKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDH-YKL 73
           I IR+VWA NLESEF LIR  ++ +P +SMDTEFPG+++    A  + L R + ++ Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIY---KADLDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDL-GTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDL G  + R+IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           L EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Carg26259 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.5e-104
Identity = 185/270 (68.52%), Postives = 222/270 (82.22%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           ++  REVWA NLESEF+LI + ID +P +SMDTEFPG++F +     N       D Y L
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTN-----PDDLYTL 75

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 132
           LK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LLR
Sbjct: 76  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 135

Query: 133 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           RQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 136 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 195

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 252
           L EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLLT
Sbjct: 196 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 255

Query: 253 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           WHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 WHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Carg26259 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 3.0e-79
Identity = 148/265 (55.85%), Postives = 194/265 (73.21%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI+IREVW  NLESE  LIR+ +D FP V+MDTEFPGIV      P      ++  HY+ 
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV----CRPVGTFKTNTEYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR+
Sbjct: 69  LKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP   
Sbjct: 129 SGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
             F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT  
Sbjct: 189 TGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 TFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]

BLAST of Carg26259 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.8e-76
Identity = 143/265 (53.96%), Postives = 193/265 (72.83%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI+IREVW  NL+ E  LIRD +D FP V+MDTEFPGIV      P      ++  HY+ 
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF +FDL  DI+A DSI+LL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FFV   + K++GVLYGL
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]

BLAST of Carg26259 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 4.9e-74
Identity = 144/265 (54.34%), Postives = 186/265 (70.19%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI IREVW  NL  EF LIR+ +D F  ++MDTEFPG+V   P A F   N     +Y+ 
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVL-KPVATFKYNN---DLNYRT 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK NVD L LIQ+G+T SD +GNLP  GT D   IW+FNF +F++  DIYA +SI+LLR+
Sbjct: 69  LKENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDF YL+K+LT K LP + 
Sbjct: 129 CGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  +L V F   VYD+K++M FC  L+GGL+R+A+ + V R VG CHQAGSDSLLT  
Sbjct: 189 ADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLG 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
           +F+K+++ +F     EK+ GVLYGL
Sbjct: 249 SFRKLKERYF-PGSTEKYTGVLYGL 265

[Close]

BLAST of Carg26259 vs. ExPASy TrEMBL
Match: A0A6J1G223 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 8.0e-160
Identity = 278/280 (99.29%), Postives = 279/280 (99.64%), Query Frame = 0


Query: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
           ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Carg26259 vs. ExPASy TrEMBL
Match: A0A6J1HU54 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 1.5e-158
Identity = 275/280 (98.21%), Postives = 278/280 (99.29%), Query Frame = 0


Query: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
           +LNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD
Sbjct: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILTQK LPNR+DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC
Sbjct: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Carg26259 vs. ExPASy TrEMBL
Match: A0A6J1CN71 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=3 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 2.6e-134
Identity = 236/278 (84.89%), Postives = 256/278 (92.09%), Query Frame = 0


Query: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MV  DL +N  K I+IREVWASNLESEF+LIRD ID FPCVSMDTEFPG+VFT P  P++
Sbjct: 1   MVVQDLKNNS-KPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYH 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
             NR  SDHY+LLKSNVDALNLIQIGITLSDSDGNLPDLGT  SRFIWEFNFMDFD+ARD
Sbjct: 61  RQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           ++APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 VHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           K+LT++SLP+RL+EFLGVLRV FGD VYDVKYMMRFCKSLYGGLDRIAK LNV+RAVGKC
Sbjct: 181 KVLTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 279
           HQAGSDSLLTWHAFQKMRDT+FVQN +EKHAGVLYGLE
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE 276

[Close]

BLAST of Carg26259 vs. ExPASy TrEMBL
Match: A0A0A0LYC8 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 5.8e-126
Identity = 221/280 (78.93%), Postives = 247/280 (88.21%), Query Frame = 0


Query: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRD ID FPCVSMDTEFPG++F     P +
Sbjct: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
                 S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+ARD
Sbjct: 61  P--NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           ++AP+SI+LLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 LHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILT + LP  L++FLGV+R+ FGDNVYD+KY+MRFC+SLYGGLDRIAK++NVNRAVGKC
Sbjct: 181 KILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]

BLAST of Carg26259 vs. ExPASy TrEMBL
Match: A0A5A7T1W0 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001920 PE=3 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 9.8e-126
Identity = 222/283 (78.45%), Postives = 247/283 (87.28%), Query Frame = 0


Query: 1   MVSHDLNDNH---YKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTA 60
           M+ HDLN NH   +K I+IREVWASNL+SEF+LI D ID FPCVSMDTEFPG++F   T 
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDL 120
           P        S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+
Sbjct: 61  P--KFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDV 120

Query: 121 ARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFA 180
           ARD +APDSI+LLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF 
Sbjct: 121 ARDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFG 180

Query: 181 YLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAV 240
           YL+KILTQ+ LP  L+EFLGV+RV FGDNVYD+KYMMRFC+SLYGGLDRIAK++NVNRAV
Sbjct: 181 YLVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAV 240

Query: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           GKCHQAGSDSLLTWHAFQKMRDTFFV+NE+ KHAGVLYGLE F
Sbjct: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]

BLAST of Carg26259 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 384.0 bits (985), Expect = 1.0e-106
Identity = 186/270 (68.89%), Postives = 225/270 (83.33%), Query Frame = 0


Query: 14  IKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDH-YKL 73
           I IR+VWA NLESEF LIR  ++ +P +SMDTEFPG+++    A  + L R + ++ Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIY---KADLDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDL-GTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDL G  + R+IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           L EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Carg26259 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 379.4 bits (973), Expect = 2.5e-105
Identity = 185/270 (68.52%), Postives = 222/270 (82.22%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           ++  REVWA NLESEF+LI + ID +P +SMDTEFPG++F +     N       D Y L
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTN-----PDDLYTL 75

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 132
           LK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LLR
Sbjct: 76  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 135

Query: 133 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           RQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 136 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 195

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 252
           L EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLLT
Sbjct: 196 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 255

Query: 253 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           WHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 WHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Carg26259 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 296.6 bits (758), Expect = 2.1e-80
Identity = 148/265 (55.85%), Postives = 194/265 (73.21%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI+IREVW  NLESE  LIR+ +D FP V+MDTEFPGIV      P      ++  HY+ 
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV----CRPVGTFKTNTEYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR+
Sbjct: 69  LKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP   
Sbjct: 129 SGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
             F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT  
Sbjct: 189 TGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 TFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]

BLAST of Carg26259 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 287.3 bits (734), Expect = 1.3e-77
Identity = 143/265 (53.96%), Postives = 193/265 (72.83%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI+IREVW  NL+ E  LIRD +D FP V+MDTEFPGIV      P      ++  HY+ 
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF +FDL  DI+A DSI+LL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FFV   + K++GVLYGL
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]

BLAST of Carg26259 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 287.3 bits (734), Expect = 1.3e-77
Identity = 143/265 (53.96%), Postives = 193/265 (72.83%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI+IREVW  NL+ E  LIRD +D FP V+MDTEFPGIV      P      ++  HY+ 
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF +FDL  DI+A DSI+LL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FFV   + K++GVLYGL
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGL 265

The following BLAST results are available for this feature:

BLAST of Carg26259 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012717.1	8.7e-161	100.00	putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp...	[more]
XP_022945861.1	1.6e-159	99.29	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 ...	[more]
XP_022967098.1	3.1e-158	98.21	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]
XP_023541056.1	1.0e-156	98.58	probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo]	[more]
XP_038877224.1	9.7e-136	85.36	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]

BLAST of Carg26259 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS6	1.4e-105	68.89	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LXM2	3.5e-104	68.52	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	3.0e-79	55.85	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	1.8e-76	53.96	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	4.9e-74	54.34	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Carg26259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G223	8.0e-160	99.29	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3...	[more]
A0A6J1HU54	1.5e-158	98.21	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 S...	[more]
A0A6J1CN71	2.6e-134	84.89	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=...	[more]
A0A0A0LYC8	5.8e-126	78.93	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV...	[more]
A0A5A7T1W0	9.8e-126	78.45	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Carg26259 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22250.1	1.0e-106	68.89	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	2.5e-105	68.52	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G32070.1	2.1e-80	55.85	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	1.3e-77	53.96	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	1.3e-77	53.96	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 169..250 e-value: 2.6E-6 score: 26.9
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 19..146 e-value: 4.5E-11 score: 42.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..279 e-value: 2.1E-97 score: 327.5
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 8..280
None	No IPR available	PANTHER	PTHR10797:SF48	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 8..280
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 16..277

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26259-RA	Carg26259-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity