Carg26215 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26215
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 7120524 .. 7121608 (+)
RNA-Seq ExpressionCarg26215
SyntenyCarg26215
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAGCCTCCAAGGCTCTCATATCTTTGGAGGCTTTGGAGATGGACTGGCAGGAGGGTATGTTGTACACAAATTAGCATCATCTTTTATCGGGTGATATTATATTCCTTTTCATTTACGTTCAGCAAGTCAAATCTAGTACCTGGAGCACAAACGGTCTTGTAAGGTTTGAGAAACTCTAGAATTTAGAGAAACTCTTAAATTAGAGAGAGAGGGGGGGGGGGGGTGTGGAGGGGGAAGCCTAGATTCCTTCATCTAATTTCCAGGGTTTTGTCCATGGTTATGTATGCTTATTGATGTATATATCTTTGATGACTGATAACAATGAATGGTTTCTGTATATGGCTTCCGCTCTGTTTCAATTTTACGAACTACAGTTAGTCATTGTCTGTCAAAATGCCATGTTTAGTTGAGGTAATGTAATGCTATTCCTTGGTGGTGTTCTGTGTTTTAGGTTTCTCAGCCGTCTTCATCACGGAGTATCTGATTTTTTGACATCAAAAGGCTCCATCTGACCTGACACTTGCATTACTGACTCTTTTTATTACCATATCTGTCAATGTCCCTATCTTCATATTGTCAGTTTTGTTTGCATTTGTGATTTACTTGTACTGTATATACTGATATTCTATTATGGCCGTCATCAGTGTCAGAAACTTGTGTGCACATATAAATGTTGATGGTAATGCAAATATCTACGGTTTTTGAAGTGCTGATGTAAATAGATTAGAAAAGGTTGTGGAAACTATATTGGATCCATTCAAGTATATCTGGTGAGAGTGGACACATTGCTGCTGGATTCATGCAAAATATCAGGTTGGACTGATAAGGTCGTGTCTGAGTCGATATTTAAATGGGTCCAAGTTGCATCATTTTCTCTCTTTCTCTCTTTCTATACTAATCAAATTCAGCTCACTTGAACCAATTCATGCAGGAGCAGCACTATGGATTCTACATCACTCAAGGACTGTCGGGTTTCTGGGGGGCTGAATCTACAATATGTTGTCATCACAGCCCATTTTCAAATTACAACTGGGAATGGAGATGCTTTGACGCTCAGCTCCAAACCTGCAAACTGTGA

mRNA sequence

ATGAATGAAGCCTCCAAGGCTCTCATATCTTTGGAGGCTTTGGAGATGGACTGGCAGGAGGTATATCTGGTGAGAGTGGACACATTGCTGCTGGATTCATGCAAAATATCAGGTTGGACTGATAAGGAGCAGCACTATGGATTCTACATCACTCAAGGACTGTCGGGTTTCTGGGGGGCTGAATCTACAATATGTTGTCATCACAGCCCATTTTCAAATTACAACTGGGAATGGAGATGCTTTGACGCTCAGCTCCAAACCTGCAAACTGTGA

Coding sequence (CDS)

ATGAATGAAGCCTCCAAGGCTCTCATATCTTTGGAGGCTTTGGAGATGGACTGGCAGGAGGTATATCTGGTGAGAGTGGACACATTGCTGCTGGATTCATGCAAAATATCAGGTTGGACTGATAAGGAGCAGCACTATGGATTCTACATCACTCAAGGACTGTCGGGTTTCTGGGGGGCTGAATCTACAATATGTTGTCATCACAGCCCATTTTCAAATTACAACTGGGAATGGAGATGCTTTGACGCTCAGCTCCAAACCTGCAAACTGTGA

Protein sequence

MNEASKALISLEALEMDWQEVYLVRVDTLLLDSCKISGWTDKEQHYGFYITQGLSGFWGAESTICCHHSPFSNYNWEWRCFDAQLQTCKL
Homology
[Close]
BLAST of Carg26215 vs. NCBI nr
Match: KAG7016828.1 (hypothetical protein SDJN02_21939, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.2e-48
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MNEASKALISLEALEMDWQEVYLVRVDTLLLDSCKISGWTDKEQHYGFYITQGLSGFWGA 60
          MNEASKALISLEALEMDWQEVYLVRVDTLLLDSCKISGWTDKEQHYGFYITQGLSGFWGA
Sbjct: 1  MNEASKALISLEALEMDWQEVYLVRVDTLLLDSCKISGWTDKEQHYGFYITQGLSGFWGA 60

Query: 61 ESTICCHHSPFSNYNWEWRCFDAQLQTCKL 91
          ESTICCHHSPFSNYNWEWRCFDAQLQTCKL
Sbjct: 61 ESTICCHHSPFSNYNWEWRCFDAQLQTCKL 90

[Close]
BLAST of Carg26215 vs. NCBI nr
Match: XP_022973071.1 (uncharacterized protein LOC111471569 [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 22  YLVRVDTLLLDSCKISGWTDKEQHYGFYITQGLSGFWGAESTICCHHSPFSNYNWEWR 80
           YLVR+DTLLLDSCKISGWTDKEQHYGFYITQ LSGFWGAESTICCHHSPFSNYNWEWR
Sbjct: 45  YLVRMDTLLLDSCKISGWTDKEQHYGFYITQELSGFWGAESTICCHHSPFSNYNWEWR 102

[Close]
BLAST of Carg26215 vs. ExPASy TrEMBL
Match: A0A6J1I7P1 (uncharacterized protein LOC111471569 OS=Cucurbita maxima OX=3661 GN=LOC111471569 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.8e-28
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 22  YLVRVDTLLLDSCKISGWTDKEQHYGFYITQGLSGFWGAESTICCHHSPFSNYNWEWR 80
           YLVR+DTLLLDSCKISGWTDKEQHYGFYITQ LSGFWGAESTICCHHSPFSNYNWEWR
Sbjct: 45  YLVRMDTLLLDSCKISGWTDKEQHYGFYITQELSGFWGAESTICCHHSPFSNYNWEWR 102

The following BLAST results are available for this feature:
BLAST of Carg26215 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016828.13.2e-48100.00hypothetical protein SDJN02_21939, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022973071.11.4e-2796.55uncharacterized protein LOC111471569 [Cucurbita maxima][more]
BLAST of Carg26215 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26215 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I7P16.8e-2896.55uncharacterized protein LOC111471569 OS=Cucurbita maxima OX=3661 GN=LOC111471569... [more]
BLAST of Carg26215 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26215-RACarg26215-RAmRNA