Carg26145 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26145
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCOX assembly mitochondrial protein
LocationCarg_Chr13: 5766538 .. 5766726 (-)
RNA-Seq ExpressionCarg26145
SyntenyCarg26145
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAGAAAAAGATGTTACCAACCGGCAAAGCTCCGATCGACGGTGACGGCGGCTACGAGCGGTTAGAGCAGGCTCTCCGAGAGAACCACAACCGATTGCCAGAAGGTCCGGCGCGGCGCTCGGCCTGCCGAAACCTGAACCGATCTCTTGCAGAGTGCGTGGTGGCGACGGCTTGGTTGTTTGATTAG

mRNA sequence

GGAAAGAAAAAGATGTTACCAACCGGCAAAGCTCCGATCGACGGTGACGGCGGCTACGAGCGGTTAGAGCAGGCTCTCCGAGAGAACCACAACCGATTGCCAGAAGGTCCGGCGCGGCGCTCGGCCTGCCGAAACCTGAACCGATCTCTTGCAGAGTGCGTGGTGGCGACGGCTTGGTTGTTTGATTAG

Coding sequence (CDS)

GGAAAGAAAAAGATGTTACCAACCGGCAAAGCTCCGATCGACGGTGACGGCGGCTACGAGCGGTTAGAGCAGGCTCTCCGAGAGAACCACAACCGATTGCCAGAAGGTCCGGCGCGGCGCTCGGCCTGCCGAAACCTGAACCGATCTCTTGCAGAGTGCGTGGTGGCGACGGCTTGGTTGTTTGATTAG

Protein sequence

GKKKMLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATAWLFD
Homology
BLAST of Carg26145 vs. NCBI nr
Match: KAG7019417.1 (hypothetical protein SDJN02_18378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 2.1e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  GKKKMLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATAWL 60
          GKKKMLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATAWL
Sbjct: 1  GKKKMLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATAWL 60

Query: 61 FD 63
          FD
Sbjct: 61 FD 62

BLAST of Carg26145 vs. NCBI nr
Match: XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 4.5e-17
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  GKKKMLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          GKK+MLPTG A I GDGG ERLEQALRE H RLPEGPARRSACR+LNRSLAEC+VATA
Sbjct: 2  GKKEMLPTGGASICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATA 59

BLAST of Carg26145 vs. NCBI nr
Match: KAE8653663.1 (hypothetical protein Csa_007602 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          MLP G++P+ GDGG +RLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

BLAST of Carg26145 vs. NCBI nr
Match: XP_004145445.1 (uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          MLP G++P+ GDGG +RLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

BLAST of Carg26145 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVAT 58
          M+PTGKAPI GDGG ERLEQALR+ H RLPEGPARRS C +LNRS AEC+VAT
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVAT 53

BLAST of Carg26145 vs. ExPASy TrEMBL
Match: A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          MLP G++P+ GDGG +RLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

BLAST of Carg26145 vs. ExPASy TrEMBL
Match: A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVAT 58
          M+PTGKAPI GDGG ERLEQALR+ H RLPEGPARRS C +LNRS AEC+VAT
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVAT 53

BLAST of Carg26145 vs. ExPASy TrEMBL
Match: A0A6J1GSM0 (uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC111457119 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVAT 58
          M+PTGKAPI GDGG ERLEQALR+ H RLPEGPARRS C +LNRS AEC+VAT
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVAT 53

BLAST of Carg26145 vs. ExPASy TrEMBL
Match: A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-14
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          MLP G++P+ GD G ERLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

BLAST of Carg26145 vs. ExPASy TrEMBL
Match: A0A1S3C8S8 (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-14
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          MLP G++P+ GD G ERLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

BLAST of Carg26145 vs. TAIR 10
Match: AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-09
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 20 ERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          +RLE+AL + H R+PEGPARRS CR+LN++ AECVVA A
Sbjct: 35 DRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEA 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7019417.12.1e-27100.00hypothetical protein SDJN02_18378, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038893663.14.5e-1784.48uncharacterized protein LOC120082530 [Benincasa hispida][more]
KAE8653663.17.2e-1577.78hypothetical protein Csa_007602 [Cucumis sativus][more]
XP_004145445.17.2e-1577.78uncharacterized protein LOC101219184 [Cucumis sativus][more]
XP_023542217.11.6e-1479.25uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYC13.5e-1577.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1[more]
A0A6J1K2P51.0e-1479.25uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507... [more]
A0A6J1GSM01.0e-1479.25uncharacterized protein LOC111457119 OS=Cucurbita moschata OX=3662 GN=LOC1114571... [more]
A0A5D3CLT32.2e-1477.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C8S82.2e-1477.78uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=... [more]
Match NameE-valueIdentityDescription
AT1G31175.12.8e-0966.67unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26145-RACarg26145-RAmRNA