Carg26139 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26139
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 5702544 .. 5704416 (+)
RNA-Seq ExpressionCarg26139
SyntenyCarg26139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCATCTCTTTCGATTCGGTCGCCAGAATGCAGACTGCTGGCGACTGACTCTAGCGCCTCACGGTTAGACCTTAATGATGTGTCGATGCAGTTTAGAAGTGCAGCTGTATGTTCTTTTAGCATACGCTCTAACTTATCCACTCCATAGCCACCAAATATCCGAACAAAGGCTTGTAGTTCTCTGGCGTCTGTGACAGAGTCAGCAAAATATCCACCCACAGGCCTTGTACTCTTGAAGCATTTGTGAAGTGGAGCAAAAAGAATTCCAGCACCTGAAGTATCCTTGATTATGTTTTCAATGTACCAGTTACAGACAGCTTCAGTTGCTGATCCTGTTTGTTGCTCTGCTGGCTTCTCAAATGAATGCAAAGATGAAACTGGACCCGAGCATGCCTCCGCAAGCAAAACATCTCGTATTCCCTGGGTAAGGTCCATGCTAATGTGCTGCTCTGCAAGATGGACAATACTGATATGCCGACGAATCAGAGATTCTAAAATAGAAGGTCGTTGAAGGTCATTCTCGGTTTTTATTACAGCAAGTAACCTCCTCCTGAAGTTGCCAAGGATGCATTCTCTCATATACTGCAACAAATAGCTCATTAGCTATCATGAAATCACATGATTCTCTCTCATGATGCACGATTCTAAAAGAACCATCTAAGTTGTCATTGTTTACGAGACAAAGGAAGCAACATTTAAAGAAAGGATAATACCAGGTAGGACATGGGCTAGAATATTAATAAAATCGTTTTGTTCTTTTTCCCATATACTAGAAAAAGTCGTCTCGTTCAATTTGCCCAATTATGCTAGAAAAGAAATGTGAGACCCTACATCAATTGGAGAGGAGAACGAGCGCCAACAAGGATGCTAGGCCTTGAAGGGGGATGGATTGTGAGATTTCACATCGGTTGAGGAGGAGAACGAAACATTCTTTATAAGCGTGTGAAAATCTCTCCCTAGCAAACGCGTTTTAAAAACCTTGAGGGGAAGTCCGAAAGGAAATCCCAAAGAGGACAATATCTGTTAGCGTGGGCTTGGGCTATTACAAATGGTTTCCACAAAGAATGTTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACGATCCACCCCCTTCAGGGCTCAGCGTCCTTGCTAGCACTCGTTCCCCTTCCAATCTATGTGGGATCTCACAATCTACAGCAAAACTTCGAGGCCTAGCTTGTAATGGCTTGCTCATAAACAGAGGATAAAGAAGCTCACTCGATTGTCCACTCGTCCTTAATCAATCGATGAAGAATGTAAGAAAACTTGTTAATATCATTGTCAAACTCAAAGAAAAACCTTCTCTTGTATGGCTGCTTTCTCATAAAGAGGGGATAAAGAAGCATGGAACTGATTTTAAATGCTCGTGGAATTGTGCCATTAATCACAAATCATAAAGGACTGGAAGGATAGACAACGAAAACGAAAAAAATGTGAAAAGTAATCATATCTTACCTCCCTCAGAACAAAAACGTGATTTAGAACACATATAGGCTCCATATCATTCAGAACAGAGCATAGATTGGTCAACCTTTGCATTGCAGCTTCAAGCCTGTCAGAGGAAATTTTTGAAGACTGACTTCATTTACTCGAGTTCTAACAAGTCTAGAATATTTTTTAAAGCCTCCATTCCTCGAAAATCTTAAAATGCGGGAACGAAACAAAGTTATAATAAAGAAAAGCAGCTTACATTTTTATTGAACCATTATTTTCAGGATAGCTTTCATAGCCAGGTAAGGGAAAACCAGCTGCTCCTTTTGGAGATTTAGACAAAGGAATTGAAGCTCTCGCAGCATAATTTAGAAAAGAAGCTGCTTGCTCTGGTAGAAGCTGAAATTTCTTAA

mRNA sequence

ATGGATGCATCTCTTTCGATTCGGTCGCCAGAATGCAGACTGCTGGCGACTGACTCTAGCGCCTCACGGTTAGACCTTAATGATGTGTCGATGCAGTTTAGAAGTGCAGCTACAGCTTCAGTTGCTGATCCTGTTTGTTGCTCTGCTGGCTTCTCAAATGAATGCAAAGATGAAACTGGACCCGAGCATGCCTCCGCAAGCAAAACATCTCGTATTCCCTGGGATAGCTTTCATAGCCAGACAAAGGAATTGAAGCTCTCGCAGCATAATTTAGAAAAGAAGCTGCTTGCTCTGGTAGAAGCTGAAATTTCTTAA

Coding sequence (CDS)

ATGGATGCATCTCTTTCGATTCGGTCGCCAGAATGCAGACTGCTGGCGACTGACTCTAGCGCCTCACGGTTAGACCTTAATGATGTGTCGATGCAGTTTAGAAGTGCAGCTACAGCTTCAGTTGCTGATCCTGTTTGTTGCTCTGCTGGCTTCTCAAATGAATGCAAAGATGAAACTGGACCCGAGCATGCCTCCGCAAGCAAAACATCTCGTATTCCCTGGGATAGCTTTCATAGCCAGACAAAGGAATTGAAGCTCTCGCAGCATAATTTAGAAAAGAAGCTGCTTGCTCTGGTAGAAGCTGAAATTTCTTAA

Protein sequence

MDASLSIRSPECRLLATDSSASRLDLNDVSMQFRSAATASVADPVCCSAGFSNECKDETGPEHASASKTSRIPWDSFHSQTKELKLSQHNLEKKLLALVEAEIS
Homology
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BLAST of Carg26139 vs. NCBI nr
Match: KAG7019411.1 (hypothetical protein SDJN02_18372, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 6.3e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MDASLSIRSPECRLLATDSSASRLDLNDVSMQFRSAATASVADPVCCSAGFSNECKDETG 60
           MDASLSIRSPECRLLATDSSASRLDLNDVSMQFRSAATASVADPVCCSAGFSNECKDETG
Sbjct: 1   MDASLSIRSPECRLLATDSSASRLDLNDVSMQFRSAATASVADPVCCSAGFSNECKDETG 60

Query: 61  PEHASASKTSRIPWDSFHSQTKELKLSQHNLEKKLLALVEAEIS 105
           PEHASASKTSRIPWDSFHSQTKELKLSQHNLEKKLLALVEAEIS
Sbjct: 61  PEHASASKTSRIPWDSFHSQTKELKLSQHNLEKKLLALVEAEIS 104

The following BLAST results are available for this feature:
BLAST of Carg26139 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019411.16.3e-48100.00hypothetical protein SDJN02_18372, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26139 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26139 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26139 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26139-RACarg26139-RAmRNA