Carg26109 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26109
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein 38-like
Location	Carg_Chr17: 4307744 .. 4308868 (-)
RNA-Seq Expression	Carg26109
Synteny	Carg26109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAACAACACTGGCAATTTCTTAACAATGGCGGCGGCGGCGGCAGCAGCGTTGGCCTTTGGGGCCAATATAATGACACCACTTTCACCAAAATCTTCGTTGGAGGGTTGGCTTGGGACACTCAGAGACATACCTTGAAAAGGTATTTTGAACAATTTGGGGAAATTTTGGAAGCTGTTATTATTACTGATAAAACCACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTCCCCCTTCCCCATTCCCCCTTCTTGTTCTTGTAATAATGCTGATTTGATTTGATTTGATTTGATTTGATTTCATTGATTTTGTTTTTAGGTCACATTTAAGAATCCTGATTCTGCCATTAGAGCTTCTCAAAACCCTTCCCCTGTTATCGATGGTAGAACGGCTAATTGCAATCTCGCTTCTCAACATGGTTCGTTCTCATTTCTTTGATCTTCACCTTCTTTTTCAGAAAATGCTTTGATCTTTCCAATGGATCATAAAAATTCCCACATGCAATCTGAATCTCCATTTCTTTTGCCGAGAATCATGTCAAATCCAAAAATGTTGAACAAATTTGCAGGTGTTGCTGGAAGATTTAGAGGTTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAGCCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTAAGGGTTGAAACAAGAACTATAAATGATATCAACAAAACCCAATTTTACCATTTTCCTGTTCTTGATTAAAACTGTCATTTCAGGTTTGCTGGATATTCACAAGACATAATCCATCCATTGGTAGGAATCTATGTTTATATGTTTGTGTTTGTGATCTTGTTGGCATTGATTTTGGTCTGGGCGTTGTGTTTTCAATGCAGAACTATTATGGTGCTTACAGGGGCCAACAATTTTCACCTTATTACTCTGCAAATGGGATTTCAGAACAGGCTAGAATGTTTCAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTATGCGTTTGGAATTCAGTATCCACACGTCATGCAGTACCCGTATCTTCATCAGCAGCACGGTTTGACCGATATCCTATTGCTTCCTGGCTCGAACGCAACAAGAACA

mRNA sequence

ATGTCTCAACAACACTGGCAATTTCTTAACAATGGCGGCGGCGGCGGCAGCAGCGTTGGCCTTTGGGGCCAATATAATGACACCACTTTCACCAAAATCTTCGTTGGAGGGTTGGCTTGGGACACTCAGAGACATACCTTGAAAAGGTATTTTGAACAATTTGGGGAAATTTTGGAAGCTGTTATTATTACTGATAAAACCACTGGCAGATCCAAGGGTTATGGCTTTGTCACATTTAAGAATCCTGATTCTGCCATTAGAGCTTCTCAAAACCCTTCCCCTGTTATCGATGGTAGAACGGCTAATTGCAATCTCGCTTCTCAACATGGTGTTGCTGGAAGATTTAGAGGTTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAGCCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACATAATCCATCCATTGAACTATTATGGTGCTTACAGGGGCCAACAATTTTCACCTTATTACTCTGCAAATGGGATTTCAGAACAGGCTAGAATGTTTCAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTATGCGTTTGGAATTCAGTATCCACACGTCATGCAGTACCCGTATCTTCATCAGCAGCACGGTTTGACCGATATCCTATTGCTTCCTGGCTCGAACGCAACAAGAACA

Coding sequence (CDS)

ATGTCTCAACAACACTGGCAATTTCTTAACAATGGCGGCGGCGGCGGCAGCAGCGTTGGCCTTTGGGGCCAATATAATGACACCACTTTCACCAAAATCTTCGTTGGAGGGTTGGCTTGGGACACTCAGAGACATACCTTGAAAAGGTATTTTGAACAATTTGGGGAAATTTTGGAAGCTGTTATTATTACTGATAAAACCACTGGCAGATCCAAGGGTTATGGCTTTGTCACATTTAAGAATCCTGATTCTGCCATTAGAGCTTCTCAAAACCCTTCCCCTGTTATCGATGGTAGAACGGCTAATTGCAATCTCGCTTCTCAACATGGTGTTGCTGGAAGATTTAGAGGTTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAGCCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACATAATCCATCCATTGAACTATTATGGTGCTTACAGGGGCCAACAATTTTCACCTTATTACTCTGCAAATGGGATTTCAGAACAGGCTAGAATGTTTCAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTATGCGTTTGGAATTCAGTATCCACACGTCATGCAGTACCCGTATCTTCATCAGCAGCACGGTTTGACCGATATCCTATTGCTTCCTGGCTCGAACGCAACAAGAACA

Protein sequence

MSQQHWQFLNNGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSANGISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDILLLPGSNATRT

Homology

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BLAST of Carg26109 vs. NCBI nr
Match: KAG7013834.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 495.7 bits (1275), Expect = 2.2e-136
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MSQQHWQFLNNGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 60
           MSQQHWQFLNNGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA
Sbjct: 1   MSQQHWQFLNNGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 60

Query: 61  VIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSG 120
           VIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSG
Sbjct: 61  VIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSG 120

Query: 121 IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN 180
           IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN
Sbjct: 121 IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN 180

Query: 181 GISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDILLLPGSNATRT 239
           GISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDILLLPGSNATRT
Sbjct: 181 GISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDILLLPGSNATRT 238

[Close]

BLAST of Carg26109 vs. NCBI nr
Match: KAG6575302.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 487.3 bits (1253), Expect = 7.7e-134
Identity = 236/238 (99.16%), Postives = 236/238 (99.16%), Query Frame = 0


Query: 1   MSQQHWQFLNNGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 60
           MSQQHWQFLNN GGGGSSVGLWG YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA
Sbjct: 1   MSQQHWQFLNN-GGGGSSVGLWGHYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 60

Query: 61  VIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSG 120
           VIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSG
Sbjct: 61  VIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSG 120

Query: 121 IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN 180
           IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN
Sbjct: 121 IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN 180

Query: 181 GISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDILLLPGSNATRT 239
           GISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDILLLPGSNATRT
Sbjct: 181 GISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDILLLPGSNATRT 237

[Close]

BLAST of Carg26109 vs. NCBI nr
Match: XP_022929861.1 (RNA-binding protein 38-like [Cucurbita moschata])

HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127
Identity = 225/237 (94.94%), Postives = 229/237 (96.62%), Query Frame = 0


Query: 1   MSQQHWQFLNNGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 60
           MSQQHWQFLNNGGGG    GLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA
Sbjct: 1   MSQQHWQFLNNGGGG----GLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 60

Query: 61  VIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSG 120
           VIITDKTTGRSKGYGFVTFK+PDSAIRASQNPSPVIDGRTANCNLASQHGV GRFR SSG
Sbjct: 61  VIITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVVGRFRDSSG 120

Query: 121 IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN 180
           IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN
Sbjct: 121 IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN 180

Query: 181 GISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDILLLPGSNATR 238
           GIS+QARMFQNLYPYYAQSSQGYAFGIQYPH++QYPYLHQQHGL DIL LPGSNATR
Sbjct: 181 GISDQARMFQNLYPYYAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILSLPGSNATR 233

[Close]

BLAST of Carg26109 vs. NCBI nr
Match: XP_022992358.1 (RNA-binding protein 38-like [Cucurbita maxima])

HSP 1 Score: 457.6 bits (1176), Expect = 6.5e-125
Identity = 226/242 (93.39%), Postives = 230/242 (95.04%), Query Frame = 0


Query: 1   MSQQHWQFLNNGGGGG---SSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQH QF NNGGGGG   SSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI
Sbjct: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60

Query: 61  LEAVIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120
           LEAV+ITDKTTGRSKGYGFVTFK+PDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG
Sbjct: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120

Query: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180
           SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY
Sbjct: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180

Query: 181 SANGISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLH-QQHGLTDILLLPGSNAT 239
           S  GISEQARMF+NLYPYYAQSSQGYAFGIQYPH+M YP LH QQHGLTDIL LPG NAT
Sbjct: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240

[Close]

BLAST of Carg26109 vs. NCBI nr
Match: XP_008460001.1 (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 385.6 bits (989), Expect = 3.2e-103
Identity = 195/250 (78.00%), Postives = 209/250 (83.60%), Query Frame = 0


Query: 1   MSQQHWQFLN-NGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILE 60
           MSQQ  QF N N     SS+ L GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEILE
Sbjct: 1   MSQQR-QFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILE 60

Query: 61  AVIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLAS-----------Q 120
           AV+ITDK TGRSKGYGFVTFK+PD+AIRA QNPSPVIDGR ANCNLAS           Q
Sbjct: 61  AVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQ 120

Query: 121 HGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAY 180
           HGV GRFRG+SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PLNYYG Y
Sbjct: 121 HGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVY 180

Query: 181 RGQQFSPYYSANGISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDIL 239
            GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FGIQYPH+MQYPYL QQHG T IL
Sbjct: 181 GGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGIL 240

[Close]

BLAST of Carg26109 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-24
Identity = 66/149 (44.30%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 23  GQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNP 82
           G + DT  TK+FVGGLAWDT +  +  +F ++G+ILEAVII+DK T RSKGYGFVTFK+ 
Sbjct: 9   GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDA 68

Query: 83  DSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSGIVTPHAYHIPSSSYIHQPT--- 142
            +A RA ++ +P+I+GR ANCNLAS   + GR R S  + +P     P +     P    
Sbjct: 69  KAATRACEDSTPIINGRRANCNLAS---LGGRLRKSPTMTSPQ--QGPKNGNRATPPHVG 128

Query: 143 --TQYSYPLSGYGFAGYSQDIIHPLNYYG 167
             +Q+ YP SG+    + Q     + +YG
Sbjct: 129 NHSQWYYP-SGFTNQQHQQQNHQAVPFYG 151

[Close]

BLAST of Carg26109 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-22
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 23  GQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNP 82
           G   DTTFTKIFVGGL + T   +L++YFE FG+I EAV+ITD+ TG+S+GYGFVT  + 
Sbjct: 26  GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 85

Query: 83  DSAIRASQNPSPVIDGRTANCNLA 107
            +A RA ++P+P+IDGR AN NLA
Sbjct: 86  AAAERACKDPNPIIDGRKANVNLA 109

[Close]

BLAST of Carg26109 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-22
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 23  GQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNP 82
           G   DTTFTKIFVGGL + T   +L++YFE FG+I EAV+ITD+ TG+S+GYGFVT  + 
Sbjct: 24  GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 83

Query: 83  DSAIRASQNPSPVIDGRTANCNLA 107
            +A RA ++P+P+IDGR AN NLA
Sbjct: 84  AAADRACKDPNPIIDGRKANVNLA 107

[Close]

BLAST of Carg26109 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-22
Identity = 76/197 (38.58%), Postives = 103/197 (52.28%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNPDSAI 86
           DTTFTKIFVGGL + T   +L++YFE FG+I EAV+ITD+ TG+S+GYGFVT  +  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 87  RASQNPSPVIDGRTANCNLASQHGVAGRFRGSSGIVTPHAYHIPSSSYIHQP---TTQYS 146
           RA ++P+P+IDGR AN NLA   G   R   S+  +     H    ++I +P   T QY 
Sbjct: 67  RACKDPNPIIDGRKANVNLA-YLGAKPRNLQSAFTIGVQQLH---PAFIQRPFGLTPQYI 126

Query: 147 YPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSANGISEQARMFQNL----YPYYAQS 206
           YP +          I+ P            SPY   N  ++    +       YPY A  
Sbjct: 127 YPPA----------IVQPSVVIPTPIPSLQSPYIDYNAATQAFTHYTTAAYEQYPYAASP 186

Query: 207 SQGYAFGIQYPHVMQYP 217
           + GY  G  Y   +Q P
Sbjct: 187 ATGY-MGYGYTSAVQQP 188

[Close]

BLAST of Carg26109 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.3e-22
Identity = 78/203 (38.42%), Postives = 105/203 (51.72%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNPDSAI 86
           DTT+TKIFVGGL + T   +L++YFE FGEI EAV+ITD+ TG+S+GYGFVT  +  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 87  RASQNPSPVIDGRTANCNLASQHGVAGRFRGSSGIVTPHAYHIPSSSYIHQP---TTQYS 146
           RA ++P+P+IDGR AN NLA         +       P  +     ++I +P    T Y 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQIH----PAFIQRPYGIPTHYV 126

Query: 147 YPLSGYGFAGYSQDIIH---------PLNYYGAYRGQQFSPYYSANGISEQARMFQNLYP 206
           YP     F   S  I H           + Y  Y G  ++ Y SA   +  A   Q  YP
Sbjct: 127 YP---QAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAAAAYEQ--YP 186

Query: 207 YYAQ-SSQGYAFGIQYPHVMQYP 217
           Y A  ++ GY     Y + MQ P
Sbjct: 187 YAASPAATGYVAAAGYGYAMQQP 200

[Close]

BLAST of Carg26109 vs. ExPASy TrEMBL
Match: A0A6J1EPB6 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111436341 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.2e-128
Identity = 225/237 (94.94%), Postives = 229/237 (96.62%), Query Frame = 0


Query: 1   MSQQHWQFLNNGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 60
           MSQQHWQFLNNGGGG    GLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA
Sbjct: 1   MSQQHWQFLNNGGGG----GLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 60

Query: 61  VIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSG 120
           VIITDKTTGRSKGYGFVTFK+PDSAIRASQNPSPVIDGRTANCNLASQHGV GRFR SSG
Sbjct: 61  VIITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVVGRFRDSSG 120

Query: 121 IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN 180
           IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN
Sbjct: 121 IVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSAN 180

Query: 181 GISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDILLLPGSNATR 238
           GIS+QARMFQNLYPYYAQSSQGYAFGIQYPH++QYPYLHQQHGL DIL LPGSNATR
Sbjct: 181 GISDQARMFQNLYPYYAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILSLPGSNATR 233

[Close]

BLAST of Carg26109 vs. ExPASy TrEMBL
Match: A0A6J1JYZ4 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111488693 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.2e-125
Identity = 226/242 (93.39%), Postives = 230/242 (95.04%), Query Frame = 0


Query: 1   MSQQHWQFLNNGGGGG---SSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQH QF NNGGGGG   SSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI
Sbjct: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60

Query: 61  LEAVIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120
           LEAV+ITDKTTGRSKGYGFVTFK+PDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG
Sbjct: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120

Query: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180
           SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY
Sbjct: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180

Query: 181 SANGISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLH-QQHGLTDILLLPGSNAT 239
           S  GISEQARMF+NLYPYYAQSSQGYAFGIQYPH+M YP LH QQHGLTDIL LPG NAT
Sbjct: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240

[Close]

BLAST of Carg26109 vs. ExPASy TrEMBL
Match: A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.5e-103
Identity = 195/250 (78.00%), Postives = 209/250 (83.60%), Query Frame = 0


Query: 1   MSQQHWQFLN-NGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILE 60
           MSQQ  QF N N     SS+ L GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEILE
Sbjct: 1   MSQQR-QFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILE 60

Query: 61  AVIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLAS-----------Q 120
           AV+ITDK TGRSKGYGFVTFK+PD+AIRA QNPSPVIDGR ANCNLAS           Q
Sbjct: 61  AVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQ 120

Query: 121 HGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAY 180
           HGV GRFRG+SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PLNYYG Y
Sbjct: 121 HGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVY 180

Query: 181 RGQQFSPYYSANGISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDIL 239
            GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FGIQYPH+MQYPYL QQHG T IL
Sbjct: 181 GGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGIL 240

[Close]

BLAST of Carg26109 vs. ExPASy TrEMBL
Match: A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.7e-102
Identity = 193/250 (77.20%), Postives = 208/250 (83.20%), Query Frame = 0


Query: 1   MSQQHWQFLN-NGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILE 60
           MSQQ  QF N N     SS+ L GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEILE
Sbjct: 1   MSQQR-QFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILE 60

Query: 61  AVIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLAS-----------Q 120
           AV+ITDK TGRSKGYGFVTFK+PD+AIRA QNPSPVIDGR ANCNLAS           Q
Sbjct: 61  AVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQ 120

Query: 121 HGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAY 180
           HGV GRFRG+SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PLNYYG Y
Sbjct: 121 HGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVY 180

Query: 181 RGQQFSPYYSANGISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDIL 239
            GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FG+QYPH+MQYPYL QQH  T IL
Sbjct: 181 GGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGIL 240

[Close]

BLAST of Carg26109 vs. ExPASy TrEMBL
Match: A0A5A7TA32 (RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001330 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 5.3e-96
Identity = 187/250 (74.80%), Postives = 201/250 (80.40%), Query Frame = 0


Query: 1   MSQQHWQFLN-NGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILE 60
           MSQQ  QF N N     SS+ L GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEILE
Sbjct: 1   MSQQR-QFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILE 60

Query: 61  AVIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLAS-----------Q 120
           AV+ITDK TGRS        K+PD+AIRA QNPSPVIDGR ANCNLAS           Q
Sbjct: 61  AVVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQ 120

Query: 121 HGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAY 180
           HGV GRFRG+SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PLNYYG Y
Sbjct: 121 HGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVY 180

Query: 181 RGQQFSPYYSANGISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLHQQHGLTDIL 239
            GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FGIQYPH+MQYPYL QQHG T IL
Sbjct: 181 GGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGIL 240

[Close]

BLAST of Carg26109 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 194.5 bits (493), Expect = 9.6e-50
Identity = 130/269 (48.33%), Postives = 159/269 (59.11%), Query Frame = 0


Query: 1   MSQQHWQFLNNGGGGGSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 60
           M+QQ  QF   GG   ++        DT  TKIFVGGLAW+TQR T++RYFEQFGEI+EA
Sbjct: 1   MAQQR-QFQMEGGNNNTT--------DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEA 60

Query: 61  VIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLA------------SQ 120
           V+ITDK TGRSKGYGFVTFK  ++A+RA QN +PVIDGR ANCNLA             +
Sbjct: 61  VVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPR 120

Query: 121 HGVAGRFR--GSS-GIVTPHAYHIPSSS---YIHQP----TTQYSYPLSGYGFAGYSQDI 180
           HG  GRFR  GS  G+V P      SSS   ++HQ     T Q+ +P S YGF+GYSQ+ 
Sbjct: 121 HG-TGRFRSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEG 180

Query: 181 IHPLNYYG--AYRGQQFSPYYSANGISEQARMFQNLYPYY-----------------AQS 223
           ++P+NYY    Y GQQFSP Y  +  +    MF   YPYY                 AQ 
Sbjct: 181 MYPMNYYNHHLYGGQQFSP-YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQH 240

[Close]

BLAST of Carg26109 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-37
Identity = 91/209 (43.54%), Postives = 117/209 (55.98%), Query Frame = 0


Query: 25  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNPDS 84
           + DTTFTK+FVGGLAW+TQ  TL+R+F+Q+G+ILEAV+ITDK TGRSKGYGFVTF++P++
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 85  AIRASQNPSPVIDGRTANCNLAS--------QHGV----AGRFRGSS----GIVTPHAYH 144
           A RA  +P+P+IDGR ANCNLAS        Q+ V     GR R  S     + +P   H
Sbjct: 78  ARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSPRGLH 137

Query: 145 IPSSSYIHQPTTQYS----YPLSGYGFAGYSQDIIHPLN--YYGAYRGQQFSPYYSANGI 204
             S  Y   PT  Y     YP   YG   Y  D ++  +  +YG Y GQQ+   Y   G 
Sbjct: 138 FGSHPYHQPPTYNYQQGVVYP---YGVTPYGPDYMYSQSQGFYGPYMGQQYLQVYGVPGA 197

Query: 205 SEQARMFQNLYPYYAQSSQGYAFGIQYPH 212
                       +    + GY  G  Y H
Sbjct: 198 VNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of Carg26109 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-37
Identity = 91/209 (43.54%), Postives = 117/209 (55.98%), Query Frame = 0


Query: 25  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNPDS 84
           + DTTFTK+FVGGLAW+TQ  TL+R+F+Q+G+ILEAV+ITDK TGRSKGYGFVTF++P++
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 85  AIRASQNPSPVIDGRTANCNLAS--------QHGV----AGRFRGSS----GIVTPHAYH 144
           A RA  +P+P+IDGR ANCNLAS        Q+ V     GR R  S     + +P   H
Sbjct: 78  ARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSPRGLH 137

Query: 145 IPSSSYIHQPTTQYS----YPLSGYGFAGYSQDIIHPLN--YYGAYRGQQFSPYYSANGI 204
             S  Y   PT  Y     YP   YG   Y  D ++  +  +YG Y GQQ+   Y   G 
Sbjct: 138 FGSHPYHQPPTYNYQQGVVYP---YGVTPYGPDYMYSQSQGFYGPYMGQQYLQVYGVPGA 197

Query: 205 SEQARMFQNLYPYYAQSSQGYAFGIQYPH 212
                       +    + GY  G  Y H
Sbjct: 198 VNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of Carg26109 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-33
Identity = 91/214 (42.52%), Postives = 114/214 (53.27%), Query Frame = 0


Query: 25  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNPDS 84
           + DTT+TK+FVGGLAW+T    ++RYFEQFGEILEAVIITDK TG+SKGYGFVTF+  DS
Sbjct: 11  FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70

Query: 85  AIRASQNPSPVIDGRTANCNLAS---QHGVAGRFRGSSGIVT------PHAYHIPSSSYI 144
           A RA  +P+PVIDGR ANCN+AS         R RG +G  +      P  Y   ++   
Sbjct: 71  ATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLP 130

Query: 145 HQPTTQYSYPLSGYGF----AGYSQDIIHPLNYYGAYRGQQFSPYYSANGISEQARMFQN 204
                Q  YP  GY +     GY Q + +       Y  QQ   Y    G +  +     
Sbjct: 131 PAAAPQLMYPSYGYTYNPDQFGYHQALYNTQLQQAQYYQQQQQLY--GGGATSPSSSGAT 190

Query: 205 LYP---YYAQSSQGYAFGIQYPHVMQYPYLHQQH 223
           + P   YY  S Q      Q+ H +  PY  QQH
Sbjct: 191 IMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQH 222

[Close]

BLAST of Carg26109 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-33
Identity = 91/214 (42.52%), Postives = 114/214 (53.27%), Query Frame = 0


Query: 25  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVIITDKTTGRSKGYGFVTFKNPDS 84
           + DTT+TK+FVGGLAW+T    ++RYFEQFGEILEAVIITDK TG+SKGYGFVTF+  DS
Sbjct: 11  FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70

Query: 85  AIRASQNPSPVIDGRTANCNLAS---QHGVAGRFRGSSGIVT------PHAYHIPSSSYI 144
           A RA  +P+PVIDGR ANCN+AS         R RG +G  +      P  Y   ++   
Sbjct: 71  ATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLP 130

Query: 145 HQPTTQYSYPLSGYGF----AGYSQDIIHPLNYYGAYRGQQFSPYYSANGISEQARMFQN 204
                Q  YP  GY +     GY Q + +       Y  QQ   Y    G +  +     
Sbjct: 131 PAAAPQLMYPSYGYTYNPDQFGYHQALYNTQLQQAQYYQQQQQLY--GGGATSPSSSGAT 190

Query: 205 LYP---YYAQSSQGYAFGIQYPHVMQYPYLHQQH 223
           + P   YY  S Q      Q+ H +  PY  QQH
Sbjct: 191 IMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQH 222

The following BLAST results are available for this feature:

BLAST of Carg26109 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013834.1	2.2e-136	100.00	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575302.1	7.7e-134	99.16	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022929861.1	1.1e-127	94.94	RNA-binding protein 38-like [Cucurbita moschata]	[more]
XP_022992358.1	6.5e-125	93.39	RNA-binding protein 38-like [Cucurbita maxima]	[more]
XP_008460001.1	3.2e-103	78.00	PREDICTED: RNA-binding protein 24-B [Cucumis melo]	[more]

BLAST of Carg26109 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.3e-24	44.30	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9H0Z9	4.9e-22	59.52	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q62176	4.9e-22	59.52	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q6DIV4	4.9e-22	38.58	RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1	[more]
Q76LC6	8.3e-22	38.42	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]

BLAST of Carg26109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPB6	5.2e-128	94.94	RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111436341 PE=4 S...	[more]
A0A6J1JYZ4	3.2e-125	93.39	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111488693 PE=4 SV=...	[more]
A0A1S3CBZ0	1.5e-103	78.00	RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1	[more]
A0A0A0K998	1.7e-102	77.20	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV...	[more]
A0A5A7TA32	5.3e-96	74.80	RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Carg26109 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46780.1	9.6e-50	48.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	2.5e-37	43.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	2.5e-37	43.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.1	2.8e-33	42.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	2.8e-33	42.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 32..104 e-value: 1.4E-23 score: 94.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 33..90 e-value: 4.6E-18 score: 64.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 31..108 score: 17.233515
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 24..111 e-value: 5.7E-25 score: 89.3
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 16..236
None	No IPR available	PANTHER	PTHR11176:SF33	SUBFAMILY NOT NAMED	coord: 16..236
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 31..106 e-value: 4.33723E-43 score: 138.517
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 26..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26109-RA	Carg26109-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding