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Carg25856 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGATTCAAACTCCATGAAGCCCTAGGATGGAAGCGATAATTTGTACCACTTGTCATAATTATATTAGAAAGATATCTTCTGGAGGTGGGCGATCCGATCAGACGGCAATCACTGAAGTAGTTCAGCTGCTCAACTAAATGCTATGTACTCATTTTCTCATAAGATTCTCCAGATCTTCAATCGTTCTCCATTTCTCCATCAATGGCGGGATTTTTGGCAACTATTCGGCGCCTGTACCTCTCCATCTACAATTGGACTCTCTTCGTCGGATGGTAAGTTCTTCCCCCTTCTCAATCACTTCCCTCTTCATATTTCTACTCGTAATGTAAAATTTTGCTTGGGTGTTGAAGGGTTCAGGTGTTCTACTTCTCAGTCAAGCAATTGAAGGAATCTGGTCACCAACAGGTATATAATGCCGTCGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGATTATCGTGATAGAGCCTATTATGAAGTATTTTATAATGATTTCTCGCATTTTTCTACTTCGCAGATTCTCCATGGCCTCGTTGGTAAGCTATATTTGATCCGCTTACAAGTTTTGGTGTCGAAGATTTTCTTTCTTTCCCTGATTGTAGCTTAGAAACGAAGCTGAATCGTGGGTTTTGGTTTTTGCCTAATTAGGGTTTGTGAGATCCCCTGTAACAGCAACGTTACCACAGATAGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGGTTGAAACCCTTCTTTTTCATTCAATTAGCCATAAATTAGTGTTTATGTTTGTAATTTTAATTGATAAAACTGATTACTTCTTGGGTCTGGCAGGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCACAGAGGCAAGTACTTTTTTTTTACTGGAAACCTTAATTCCAAACTTAATTTACTCACTTTAGTTATTGATTATAACCTTTAACAAACCACAAGAGATGATCCAAGATTCTTTTTATAATGAATCTATGCTTATCGGCTTTATCGGCTTTATGTGTGTGTAACTCCAATGGTTGATGCTTTGTGATGGGCTTCTGATTTTTAGGAATTATGTACATTGTTAACTCAGTTTTTATTGTTAAGTTTGCCGACCATTGTATATTCTGTGAGATGATAATTTATTAGATCATCACTTCCTCATTCAAATTAGTAGATCTAGACTGTGTTTGACATGATTCGTAGAATTGTGAAAATTTGGTTACTTAATTCTTGCATGTTTAGGAGTGACTTTGAAATGGTCAAAAATCACTTCTTAGTGATTTTGCCATTCCAAACTTACTCTCAAACATGCTTGAGGAGTTTTGAAATGGTTAGGATTACTTTCATCATGTTCGAACCTACTCCAGAACATGCTTTAATCATTCATTCCAAATCAACTTAATGTTTGATTTTACAATTTTCATACCGTACAAATTGATTTTGAGTAATTAAAAACATGTTTCAGAGTTATTTTAAATGCGACAAAAGTGATTTTATCTACCTCAAAGTGTTCTTTTTGAAGTAGTTATAGAAAGAGTTAGATACTTAGAAATTCATTACAAACCAGTCCTAAGTTATGGAAAAAAGTTCCAAAATCTATCTATCAAGGCATACAGTTTTCAAGATGTACCATGGAGACGAATAAACAATTACTGACTTTATGTTGATATGCAATCTGTTGTGGATAAGTTCTATGTCTGGTTTCTTCGTCTTACCCTCCAATAGTTGAATGGTACAGTTAAAGGGAGAAGATGGAAGATTCTCTGAGTTGACACTTTTTACCAATCTTTGATTGCAGATTATCCGGTATTCATTTTATGGCATGAAGGAGGCGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTACTGGCTCCTTATGTAGTGGAGTGGAGTACAATTGGTCGGTGTTCTCTGCATCTGTGATATTAAAACTGTTCTCAATCATATCATGTAGGTATAGCACATTCCTCTTGCTGTATGTAACAGGCATCACTAGTGAAGTTGGTTTAGTCTATCTGGCTCTTCCTTACATGAAGGTAAGAAATCCAATGTCATGTTGTACACATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGCGTCGAAGTATACGTCGTTCCATTAG AAAAGATTCAAACTCCATGAAGCCCTAGGATGGAAGCGATAATTTGTACCACTTGTCATAATTATATTAGAAAGATATCTTCTGGAGGTGGGCGATCCGATCAGACGGCAATCACTGAAGTAGTTCAGCTGCTCAACTAAATGCTATGTACTCATTTTCTCATAAGATTCTCCAGATCTTCAATCGTTCTCCATTTCTCCATCAATGGCGGGATTTTTGGCAACTATTCGGCGCCTGTACCTCTCCATCTACAATTGGACTCTCTTCGTCGGATGGTGTTCTACTTCTCAGTCAAGCAATTGAAGGAATCTGGTCACCAACAGGTATATAATGCCGTCGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGATTCTCCATGGCCTCGTTGGGTTTGTGAGATCCCCTGTAACAGCAACGTTACCACAGATAGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGATTATCCGGTATTCATTTTATGGCATGAAGGAGGCGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTATAGCACATTCCTCTTGCTGTATGTAACAGGCATCACTAGTGAAGTTGGTTTAGTCTATCTGGCTCTTCCTTACATGAAGGTAAGAAATCCAATGTCATGTTGTACACATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGCGTCGAAGTATACGTCGTTCCATTAG ATGCTATGTACTCATTTTCTCATAAGATTCTCCAGATCTTCAATCGTTCTCCATTTCTCCATCAATGGCGGGATTTTTGGCAACTATTCGGCGCCTGTACCTCTCCATCTACAATTGGACTCTCTTCGTCGGATGGTGTTCTACTTCTCAGTCAAGCAATTGAAGGAATCTGGTCACCAACAGGTATATAATGCCGTCGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGATTCTCCATGGCCTCGTTGGGTTTGTGAGATCCCCTGTAACAGCAACGTTACCACAGATAGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGATTATCCGGTATTCATTTTATGGCATGAAGGAGGCGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTATAGCACATTCCTCTTGCTGTATGTAACAGGCATCACTAGTGAAGTTGGTTTAGTCTATCTGGCTCTTCCTTACATGAAGGTAAGAAATCCAATGTCATGTTGTACACATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGCGTCGAAGTATACGTCGTTCCATTAG MLCTHFLIRFSRSSIVLHFSINGGIFGNYSAPVPLHLQLDSLRRMVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVLEILHGLVGFVRSPVTATLPQIGSRLYLTWGILWSFPEIIRYSFYGMKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKVRNPMSCCTHDSLLRIQSQTDLGHAASKYTSFH Homology
BLAST of Carg25856 vs. NCBI nr
Match: KAG7031328.1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 403.3 bits (1035), Expect = 1.2e-108 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
BLAST of Carg25856 vs. NCBI nr
Match: XP_022942934.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 322.8 bits (826), Expect = 2.1e-84 Identity = 167/185 (90.27%), Postives = 167/185 (90.27%), Query Frame = 0
BLAST of Carg25856 vs. NCBI nr
Match: XP_022942201.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata] >XP_022942202.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 320.5 bits (820), Expect = 1.0e-83 Identity = 166/185 (89.73%), Postives = 166/185 (89.73%), Query Frame = 0
BLAST of Carg25856 vs. NCBI nr
Match: XP_022975511.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Cucurbita maxima] >XP_022975530.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Cucurbita maxima]) HSP 1 Score: 313.9 bits (803), Expect = 9.8e-82 Identity = 162/185 (87.57%), Postives = 165/185 (89.19%), Query Frame = 0
BLAST of Carg25856 vs. NCBI nr
Match: XP_022942935.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 233.4 bits (594), Expect = 1.7e-57 Identity = 122/140 (87.14%), Postives = 122/140 (87.14%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy Swiss-Prot
Match: Q7XSZ4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2) HSP 1 Score: 196.8 bits (499), Expect = 2.3e-49 Identity = 101/140 (72.14%), Postives = 112/140 (80.00%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy Swiss-Prot
Match: Q5ZEJ0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2B PE=2 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 6.7e-49 Identity = 100/140 (71.43%), Postives = 111/140 (79.29%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy Swiss-Prot
Match: Q8VZB2 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana OX=3702 GN=PAS2 PE=1 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 3.4e-45 Identity = 94/140 (67.14%), Postives = 110/140 (78.57%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy Swiss-Prot
Match: Q9D3B1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Mus musculus OX=10090 GN=Hacd2 PE=1 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 5.2e-17 Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy Swiss-Prot
Match: Q2KIP8 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Bos taurus OX=9913 GN=HACD2 PE=2 SV=2) HSP 1 Score: 87.8 bits (216), Expect = 1.5e-16 Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy TrEMBL
Match: A0A6J1FST0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447818 PE=3 SV=1) HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84 Identity = 167/185 (90.27%), Postives = 167/185 (90.27%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy TrEMBL
Match: A0A6J1FPK4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447328 PE=3 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 5.1e-84 Identity = 166/185 (89.73%), Postives = 166/185 (89.73%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy TrEMBL
Match: A0A6J1IEF4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita maxima OX=3661 GN=LOC111474885 PE=3 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 4.8e-82 Identity = 162/185 (87.57%), Postives = 165/185 (89.19%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy TrEMBL
Match: A0A6J1FX62 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447818 PE=3 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 8.2e-58 Identity = 122/140 (87.14%), Postives = 122/140 (87.14%), Query Frame = 0
BLAST of Carg25856 vs. ExPASy TrEMBL
Match: A0A6J1FQM5 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447328 PE=3 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 4.1e-57 Identity = 121/140 (86.43%), Postives = 121/140 (86.43%), Query Frame = 0
BLAST of Carg25856 vs. TAIR 10
Match: AT5G10480.2 (Protein-tyrosine phosphatase-like, PTPLA ) HSP 1 Score: 184.9 bits (468), Expect = 6.4e-47 Identity = 95/141 (67.38%), Postives = 111/141 (78.72%), Query Frame = 0
BLAST of Carg25856 vs. TAIR 10
Match: AT5G10480.1 (Protein-tyrosine phosphatase-like, PTPLA ) HSP 1 Score: 183.0 bits (463), Expect = 2.4e-46 Identity = 94/140 (67.14%), Postives = 110/140 (78.57%), Query Frame = 0
BLAST of Carg25856 vs. TAIR 10
Match: AT5G10480.3 (Protein-tyrosine phosphatase-like, PTPLA ) HSP 1 Score: 179.5 bits (454), Expect = 2.7e-45 Identity = 94/149 (63.09%), Postives = 110/149 (73.83%), Query Frame = 0
BLAST of Carg25856 vs. TAIR 10
Match: AT5G59770.1 (Protein-tyrosine phosphatase-like, PTPLA ) HSP 1 Score: 67.0 bits (162), Expect = 1.9e-11 Identity = 41/115 (35.65%), Postives = 58/115 (50.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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