Carg25848 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25848
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 3033033 .. 3033449 (-)
RNA-Seq ExpressionCarg25848
SyntenyCarg25848
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAACGAAAGCTACTAATTCTGCTATAAACGACAACATTCGACCCGTCGTATCGTCTAACGAAACAGAAAATACCAATTATCTGAAGTCTCTGAATTCAAATCCACAGATACAATCTTGTCTAGAATTACAGGATCCAATCTTGTCTATGACTAAAGCTGAGCAAGTACAGCACAAAACACACAGAAAATAGACACACCATGAAGTTTGTTCATTGCTAAGATAGATACATTTGCCACTCCATGTCCTTTCATCTCAGCCATATATGATGTCTACAATGACCAAAACGACAGAGCGAGGCTGCAAGCTGAAGGTGAACGATGCTCGTCCCAGGCCTGTTCGACATTTTCTGGAACACTCGAACCCTTTGAAGATTCGAAAACTTTGGTTCCACAATACCAATTTAGGGGCCTAG

mRNA sequence

ATGATAACGAAAGCTACTAATTCTGCTATAAACGACAACATTCGACCCGTCGTATCGTCTAACGAAACAGAAAATACCAATTATCTGAAGTCTCTGAATTCAAATCCACAGATACAATCTTGTCTAGAATTACAGGATCCAATCTTGTCTATGACTAAAGCTGAGCAAATACATTTGCCACTCCATGTCCTTTCATCTCAGCCATATATGATGTCTACAATGACCAAAACGACAGAGCGAGGCTGCAAGCTGAAGGTGAACGATGCTCGTCCCAGGCCTGTTCGACATTTTCTGGAACACTCGAACCCTTTGAAGATTCGAAAACTTTGGTTCCACAATACCAATTTAGGGGCCTAG

Coding sequence (CDS)

ATGATAACGAAAGCTACTAATTCTGCTATAAACGACAACATTCGACCCGTCGTATCGTCTAACGAAACAGAAAATACCAATTATCTGAAGTCTCTGAATTCAAATCCACAGATACAATCTTGTCTAGAATTACAGGATCCAATCTTGTCTATGACTAAAGCTGAGCAAATACATTTGCCACTCCATGTCCTTTCATCTCAGCCATATATGATGTCTACAATGACCAAAACGACAGAGCGAGGCTGCAAGCTGAAGGTGAACGATGCTCGTCCCAGGCCTGTTCGACATTTTCTGGAACACTCGAACCCTTTGAAGATTCGAAAACTTTGGTTCCACAATACCAATTTAGGGGCCTAG

Protein sequence

MITKATNSAINDNIRPVVSSNETENTNYLKSLNSNPQIQSCLELQDPILSMTKAEQIHLPLHVLSSQPYMMSTMTKTTERGCKLKVNDARPRPVRHFLEHSNPLKIRKLWFHNTNLGA
Homology
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BLAST of Carg25848 vs. NCBI nr
Match: KAG7020548.1 (hypothetical protein SDJN02_17234, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.7 bits (605), Expect = 5.3e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MITKATNSAINDNIRPVVSSNETENTNYLKSLNSNPQIQSCLELQDPILSMTKAEQIHLP 60
           MITKATNSAINDNIRPVVSSNETENTNYLKSLNSNPQIQSCLELQDPILSMTKAEQIHLP
Sbjct: 1   MITKATNSAINDNIRPVVSSNETENTNYLKSLNSNPQIQSCLELQDPILSMTKAEQIHLP 60

Query: 61  LHVLSSQPYMMSTMTKTTERGCKLKVNDARPRPVRHFLEHSNPLKIRKLWFHNTNLGA 119
           LHVLSSQPYMMSTMTKTTERGCKLKVNDARPRPVRHFLEHSNPLKIRKLWFHNTNLGA
Sbjct: 61  LHVLSSQPYMMSTMTKTTERGCKLKVNDARPRPVRHFLEHSNPLKIRKLWFHNTNLGA 118

The following BLAST results are available for this feature:
BLAST of Carg25848 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020548.15.3e-59100.00hypothetical protein SDJN02_17234, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg25848 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25848 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25848 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25848-RACarg25848-RAmRNA